Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1607 and B158DRAFT_1608 are separated by 13 nucleotides B158DRAFT_1608 and B158DRAFT_1609 overlap by 4 nucleotides
B158DRAFT_1607: B158DRAFT_1607 - Na+/phosphate symporter, at 1,667,886 to 1,669,481
_1607
B158DRAFT_1608: B158DRAFT_1608 - ribose-phosphate pyrophosphokinase, at 1,669,495 to 1,670,379
_1608
B158DRAFT_1609: B158DRAFT_1609 - putative thymidine phosphorylase, at 1,670,376 to 1,671,890
_1609
Position (kb)
1669
1670
1671 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1668.522 kb on + strand, within B158DRAFT_1607 at 1668.530 kb on - strand, within B158DRAFT_1607 at 1668.533 kb on + strand, within B158DRAFT_1607 at 1668.533 kb on + strand, within B158DRAFT_1607 at 1668.533 kb on + strand, within B158DRAFT_1607 at 1668.533 kb on + strand, within B158DRAFT_1607 at 1668.533 kb on + strand, within B158DRAFT_1607 at 1668.533 kb on + strand, within B158DRAFT_1607 at 1668.535 kb on - strand, within B158DRAFT_1607 at 1668.535 kb on - strand, within B158DRAFT_1607 at 1668.541 kb on - strand, within B158DRAFT_1607 at 1668.541 kb on - strand, within B158DRAFT_1607 at 1668.541 kb on - strand, within B158DRAFT_1607 at 1668.541 kb on - strand, within B158DRAFT_1607 at 1668.541 kb on - strand, within B158DRAFT_1607 at 1668.604 kb on + strand, within B158DRAFT_1607 at 1668.724 kb on - strand, within B158DRAFT_1607 at 1668.731 kb on + strand, within B158DRAFT_1607 at 1668.848 kb on + strand, within B158DRAFT_1607 at 1668.856 kb on - strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.858 kb on + strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.866 kb on - strand, within B158DRAFT_1607 at 1668.877 kb on - strand, within B158DRAFT_1607 at 1668.951 kb on + strand, within B158DRAFT_1607 at 1668.951 kb on + strand, within B158DRAFT_1607 at 1668.951 kb on + strand, within B158DRAFT_1607 at 1669.046 kb on + strand, within B158DRAFT_1607 at 1669.054 kb on + strand, within B158DRAFT_1607 at 1669.054 kb on - strand, within B158DRAFT_1607 at 1669.059 kb on - strand, within B158DRAFT_1607 at 1669.118 kb on - strand, within B158DRAFT_1607 at 1669.179 kb on - strand, within B158DRAFT_1607 at 1669.184 kb on + strand, within B158DRAFT_1607 at 1669.208 kb on + strand, within B158DRAFT_1607 at 1669.216 kb on - strand, within B158DRAFT_1607 at 1669.221 kb on - strand, within B158DRAFT_1607 at 1669.238 kb on + strand, within B158DRAFT_1607 at 1669.238 kb on + strand, within B158DRAFT_1607 at 1669.253 kb on + strand, within B158DRAFT_1607 at 1669.253 kb on + strand, within B158DRAFT_1607 at 1669.260 kb on + strand, within B158DRAFT_1607 at 1669.261 kb on - strand, within B158DRAFT_1607 at 1669.261 kb on - strand, within B158DRAFT_1607 at 1669.261 kb on - strand, within B158DRAFT_1607 at 1669.261 kb on - strand, within B158DRAFT_1607 at 1669.261 kb on - strand, within B158DRAFT_1607 at 1669.299 kb on + strand, within B158DRAFT_1607 at 1669.307 kb on - strand, within B158DRAFT_1607 at 1669.339 kb on + strand at 1669.360 kb on + strand at 1669.396 kb on + strand at 1669.442 kb on + strand at 1669.443 kb on + strand at 1669.443 kb on + strand at 1669.451 kb on - strand at 1669.451 kb on - strand at 1669.477 kb on - strand at 1669.479 kb on + strand at 1669.488 kb on + strand at 1669.496 kb on - strand at 1669.499 kb on - strand at 1669.552 kb on - strand at 1669.552 kb on - strand at 1669.651 kb on + strand, within B158DRAFT_1608 at 1669.657 kb on - strand, within B158DRAFT_1608 at 1669.668 kb on - strand, within B158DRAFT_1608 at 1669.785 kb on + strand, within B158DRAFT_1608 at 1669.911 kb on + strand, within B158DRAFT_1608 at 1669.911 kb on - strand, within B158DRAFT_1608 at 1669.919 kb on - strand, within B158DRAFT_1608 at 1669.926 kb on + strand, within B158DRAFT_1608 at 1669.934 kb on - strand, within B158DRAFT_1608 at 1669.964 kb on + strand, within B158DRAFT_1608 at 1669.972 kb on - strand, within B158DRAFT_1608 at 1669.972 kb on - strand, within B158DRAFT_1608 at 1669.972 kb on - strand, within B158DRAFT_1608 at 1669.972 kb on - strand, within B158DRAFT_1608 at 1669.972 kb on - strand, within B158DRAFT_1608 at 1669.972 kb on - strand, within B158DRAFT_1608 at 1669.972 kb on - strand, within B158DRAFT_1608 at 1669.977 kb on - strand, within B158DRAFT_1608 at 1669.999 kb on - strand, within B158DRAFT_1608 at 1670.038 kb on + strand, within B158DRAFT_1608 at 1670.114 kb on - strand, within B158DRAFT_1608 at 1670.117 kb on + strand, within B158DRAFT_1608 at 1670.125 kb on - strand, within B158DRAFT_1608 at 1670.203 kb on + strand, within B158DRAFT_1608 at 1670.203 kb on + strand, within B158DRAFT_1608 at 1670.211 kb on - strand, within B158DRAFT_1608 at 1670.340 kb on + strand at 1670.348 kb on - strand at 1670.348 kb on - strand at 1670.436 kb on + strand at 1670.438 kb on + strand at 1670.438 kb on - strand at 1670.450 kb on - strand at 1670.471 kb on + strand at 1670.471 kb on + strand at 1670.472 kb on - strand at 1670.474 kb on + strand at 1670.482 kb on - strand at 1670.482 kb on - strand at 1670.484 kb on - strand at 1670.484 kb on - strand at 1670.492 kb on + strand at 1670.503 kb on + strand at 1670.504 kb on + strand at 1670.514 kb on + strand at 1670.637 kb on + strand, within B158DRAFT_1609 at 1670.637 kb on + strand, within B158DRAFT_1609 at 1670.637 kb on + strand, within B158DRAFT_1609 at 1670.651 kb on + strand, within B158DRAFT_1609 at 1670.655 kb on - strand, within B158DRAFT_1609 at 1670.661 kb on + strand, within B158DRAFT_1609 at 1670.661 kb on + strand, within B158DRAFT_1609 at 1670.661 kb on + strand, within B158DRAFT_1609 at 1670.669 kb on - strand, within B158DRAFT_1609 at 1670.681 kb on + strand, within B158DRAFT_1609 at 1670.711 kb on + strand, within B158DRAFT_1609 at 1670.719 kb on - strand, within B158DRAFT_1609 at 1670.745 kb on + strand, within B158DRAFT_1609 at 1670.784 kb on + strand, within B158DRAFT_1609 at 1670.784 kb on + strand, within B158DRAFT_1609 at 1670.792 kb on - strand, within B158DRAFT_1609 at 1670.801 kb on + strand, within B158DRAFT_1609 at 1670.801 kb on + strand, within B158DRAFT_1609 at 1670.849 kb on + strand, within B158DRAFT_1609 at 1670.883 kb on + strand, within B158DRAFT_1609 at 1670.890 kb on + strand, within B158DRAFT_1609 at 1670.955 kb on - strand, within B158DRAFT_1609 at 1670.960 kb on + strand, within B158DRAFT_1609 at 1670.962 kb on + strand, within B158DRAFT_1609 at 1670.975 kb on - strand, within B158DRAFT_1609 at 1670.975 kb on - strand, within B158DRAFT_1609 at 1670.977 kb on + strand, within B158DRAFT_1609 at 1670.977 kb on - strand, within B158DRAFT_1609 at 1670.986 kb on + strand, within B158DRAFT_1609 at 1671.071 kb on - strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.125 kb on - strand, within B158DRAFT_1609 at 1671.125 kb on - strand, within B158DRAFT_1609 at 1671.143 kb on + strand, within B158DRAFT_1609 at 1671.310 kb on - strand, within B158DRAFT_1609 at 1671.369 kb on - strand, within B158DRAFT_1609
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,668,522 + B158DRAFT_1607 0.40 -1.4 1,668,530 - B158DRAFT_1607 0.40 +0.3 1,668,533 + B158DRAFT_1607 0.41 +0.6 1,668,533 + B158DRAFT_1607 0.41 +0.0 1,668,533 + B158DRAFT_1607 0.41 -1.3 1,668,533 + B158DRAFT_1607 0.41 -1.4 1,668,533 + B158DRAFT_1607 0.41 +0.5 1,668,533 + B158DRAFT_1607 0.41 -0.4 1,668,535 - B158DRAFT_1607 0.41 -1.3 1,668,535 - B158DRAFT_1607 0.41 -1.2 1,668,541 - B158DRAFT_1607 0.41 +3.0 1,668,541 - B158DRAFT_1607 0.41 -1.4 1,668,541 - B158DRAFT_1607 0.41 -0.3 1,668,541 - B158DRAFT_1607 0.41 -0.6 1,668,541 - B158DRAFT_1607 0.41 -1.7 1,668,604 + B158DRAFT_1607 0.45 +0.1 1,668,724 - B158DRAFT_1607 0.53 -0.5 1,668,731 + B158DRAFT_1607 0.53 +0.6 1,668,848 + B158DRAFT_1607 0.60 -1.6 1,668,856 - B158DRAFT_1607 0.61 +2.7 1,668,858 + B158DRAFT_1607 0.61 -3.1 1,668,858 + B158DRAFT_1607 0.61 +0.4 1,668,858 + B158DRAFT_1607 0.61 +0.2 1,668,858 + B158DRAFT_1607 0.61 -1.0 1,668,858 + B158DRAFT_1607 0.61 -0.0 1,668,858 + B158DRAFT_1607 0.61 -2.1 1,668,858 + B158DRAFT_1607 0.61 +0.5 1,668,858 + B158DRAFT_1607 0.61 +0.1 1,668,858 + B158DRAFT_1607 0.61 -1.1 1,668,858 + B158DRAFT_1607 0.61 +0.0 1,668,858 + B158DRAFT_1607 0.61 +2.7 1,668,858 + B158DRAFT_1607 0.61 +0.6 1,668,858 + B158DRAFT_1607 0.61 -0.8 1,668,858 + B158DRAFT_1607 0.61 -1.3 1,668,858 + B158DRAFT_1607 0.61 -0.9 1,668,866 - B158DRAFT_1607 0.61 -0.0 1,668,866 - B158DRAFT_1607 0.61 -0.2 1,668,866 - B158DRAFT_1607 0.61 -0.6 1,668,866 - B158DRAFT_1607 0.61 +0.4 1,668,866 - B158DRAFT_1607 0.61 -0.0 1,668,866 - B158DRAFT_1607 0.61 -1.7 1,668,866 - B158DRAFT_1607 0.61 +0.6 1,668,866 - B158DRAFT_1607 0.61 +0.6 1,668,866 - B158DRAFT_1607 0.61 +0.1 1,668,866 - B158DRAFT_1607 0.61 -0.5 1,668,866 - B158DRAFT_1607 0.61 -0.7 1,668,866 - B158DRAFT_1607 0.61 +0.6 1,668,866 - B158DRAFT_1607 0.61 -2.7 1,668,866 - B158DRAFT_1607 0.61 +0.4 1,668,866 - B158DRAFT_1607 0.61 -0.5 1,668,866 - B158DRAFT_1607 0.61 -0.7 1,668,866 - B158DRAFT_1607 0.61 +0.1 1,668,866 - B158DRAFT_1607 0.61 -0.5 1,668,866 - B158DRAFT_1607 0.61 -0.7 1,668,866 - B158DRAFT_1607 0.61 -0.6 1,668,866 - B158DRAFT_1607 0.61 -1.7 1,668,866 - B158DRAFT_1607 0.61 +0.3 1,668,866 - B158DRAFT_1607 0.61 -1.4 1,668,866 - B158DRAFT_1607 0.61 +0.3 1,668,866 - B158DRAFT_1607 0.61 -1.2 1,668,866 - B158DRAFT_1607 0.61 -0.5 1,668,866 - B158DRAFT_1607 0.61 -0.9 1,668,866 - B158DRAFT_1607 0.61 -0.4 1,668,866 - B158DRAFT_1607 0.61 -1.8 1,668,866 - B158DRAFT_1607 0.61 -0.6 1,668,866 - B158DRAFT_1607 0.61 +1.1 1,668,866 - B158DRAFT_1607 0.61 +1.1 1,668,866 - B158DRAFT_1607 0.61 +0.9 1,668,877 - B158DRAFT_1607 0.62 -0.4 1,668,951 + B158DRAFT_1607 0.67 -0.8 1,668,951 + B158DRAFT_1607 0.67 -1.9 1,668,951 + B158DRAFT_1607 0.67 -1.5 1,669,046 + B158DRAFT_1607 0.73 -0.6 1,669,054 + B158DRAFT_1607 0.73 -1.4 1,669,054 - B158DRAFT_1607 0.73 +0.7 1,669,059 - B158DRAFT_1607 0.73 -0.3 1,669,118 - B158DRAFT_1607 0.77 -0.3 1,669,179 - B158DRAFT_1607 0.81 +0.9 1,669,184 + B158DRAFT_1607 0.81 -2.3 1,669,208 + B158DRAFT_1607 0.83 -0.3 1,669,216 - B158DRAFT_1607 0.83 -0.7 1,669,221 - B158DRAFT_1607 0.84 -0.2 1,669,238 + B158DRAFT_1607 0.85 -0.5 1,669,238 + B158DRAFT_1607 0.85 -0.2 1,669,253 + B158DRAFT_1607 0.86 -0.3 1,669,253 + B158DRAFT_1607 0.86 +0.8 1,669,260 + B158DRAFT_1607 0.86 -0.5 1,669,261 - B158DRAFT_1607 0.86 -1.5 1,669,261 - B158DRAFT_1607 0.86 -0.3 1,669,261 - B158DRAFT_1607 0.86 -1.2 1,669,261 - B158DRAFT_1607 0.86 +0.3 1,669,261 - B158DRAFT_1607 0.86 -1.2 1,669,299 + B158DRAFT_1607 0.89 +1.1 1,669,307 - B158DRAFT_1607 0.89 -0.8 1,669,339 + -0.7 1,669,360 + +0.4 1,669,396 + -1.5 1,669,442 + +0.4 1,669,443 + -2.2 1,669,443 + +1.0 1,669,451 - -0.7 1,669,451 - +0.1 1,669,477 - +0.1 1,669,479 + +0.9 1,669,488 + -1.5 1,669,496 - -0.1 1,669,499 - -1.4 1,669,552 - +1.0 1,669,552 - +0.5 1,669,651 + B158DRAFT_1608 0.18 -0.6 1,669,657 - B158DRAFT_1608 0.18 -0.0 1,669,668 - B158DRAFT_1608 0.20 -0.8 1,669,785 + B158DRAFT_1608 0.33 -0.7 1,669,911 + B158DRAFT_1608 0.47 +2.6 1,669,911 - B158DRAFT_1608 0.47 -1.8 1,669,919 - B158DRAFT_1608 0.48 -0.7 1,669,926 + B158DRAFT_1608 0.49 -1.0 1,669,934 - B158DRAFT_1608 0.50 -0.9 1,669,964 + B158DRAFT_1608 0.53 +0.4 1,669,972 - B158DRAFT_1608 0.54 -0.3 1,669,972 - B158DRAFT_1608 0.54 +0.1 1,669,972 - B158DRAFT_1608 0.54 +0.6 1,669,972 - B158DRAFT_1608 0.54 -1.4 1,669,972 - B158DRAFT_1608 0.54 -0.8 1,669,972 - B158DRAFT_1608 0.54 -0.5 1,669,972 - B158DRAFT_1608 0.54 -1.1 1,669,977 - B158DRAFT_1608 0.54 -0.3 1,669,999 - B158DRAFT_1608 0.57 -1.7 1,670,038 + B158DRAFT_1608 0.61 +1.3 1,670,114 - B158DRAFT_1608 0.70 +0.5 1,670,117 + B158DRAFT_1608 0.70 -1.2 1,670,125 - B158DRAFT_1608 0.71 -0.7 1,670,203 + B158DRAFT_1608 0.80 -0.3 1,670,203 + B158DRAFT_1608 0.80 +0.3 1,670,211 - B158DRAFT_1608 0.81 -0.6 1,670,340 + -2.2 1,670,348 - +1.9 1,670,348 - -2.2 1,670,436 + -2.3 1,670,438 + +2.7 1,670,438 - -0.6 1,670,450 - -1.0 1,670,471 + -2.3 1,670,471 + +1.1 1,670,472 - -0.9 1,670,474 + -0.3 1,670,482 - -0.2 1,670,482 - +0.7 1,670,484 - +1.6 1,670,484 - -1.2 1,670,492 + -1.1 1,670,503 + -0.6 1,670,504 + -0.2 1,670,514 + +0.2 1,670,637 + B158DRAFT_1609 0.17 -0.5 1,670,637 + B158DRAFT_1609 0.17 -0.0 1,670,637 + B158DRAFT_1609 0.17 -0.2 1,670,651 + B158DRAFT_1609 0.18 -0.3 1,670,655 - B158DRAFT_1609 0.18 +1.4 1,670,661 + B158DRAFT_1609 0.19 -2.5 1,670,661 + B158DRAFT_1609 0.19 +0.4 1,670,661 + B158DRAFT_1609 0.19 -1.5 1,670,669 - B158DRAFT_1609 0.19 +0.6 1,670,681 + B158DRAFT_1609 0.20 +0.4 1,670,711 + B158DRAFT_1609 0.22 +0.3 1,670,719 - B158DRAFT_1609 0.23 -0.8 1,670,745 + B158DRAFT_1609 0.24 -0.4 1,670,784 + B158DRAFT_1609 0.27 +0.4 1,670,784 + B158DRAFT_1609 0.27 -0.6 1,670,792 - B158DRAFT_1609 0.27 +5.9 1,670,801 + B158DRAFT_1609 0.28 -0.8 1,670,801 + B158DRAFT_1609 0.28 +0.2 1,670,849 + B158DRAFT_1609 0.31 +0.6 1,670,883 + B158DRAFT_1609 0.33 +4.3 1,670,890 + B158DRAFT_1609 0.34 -0.7 1,670,955 - B158DRAFT_1609 0.38 +0.0 1,670,960 + B158DRAFT_1609 0.39 +1.3 1,670,962 + B158DRAFT_1609 0.39 -2.1 1,670,975 - B158DRAFT_1609 0.40 -0.7 1,670,975 - B158DRAFT_1609 0.40 -1.9 1,670,977 + B158DRAFT_1609 0.40 -2.1 1,670,977 - B158DRAFT_1609 0.40 +0.2 1,670,986 + B158DRAFT_1609 0.40 +0.8 1,671,071 - B158DRAFT_1609 0.46 +0.4 1,671,117 + B158DRAFT_1609 0.49 -0.0 1,671,117 + B158DRAFT_1609 0.49 -1.4 1,671,117 + B158DRAFT_1609 0.49 +0.8 1,671,117 + B158DRAFT_1609 0.49 -1.3 1,671,117 + B158DRAFT_1609 0.49 -2.2 1,671,125 - B158DRAFT_1609 0.49 -0.7 1,671,125 - B158DRAFT_1609 0.49 +1.0 1,671,143 + B158DRAFT_1609 0.51 -1.1 1,671,310 - B158DRAFT_1609 0.62 -0.8 1,671,369 - B158DRAFT_1609 0.66 +0.2
Or see this region's nucleotide sequence