Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1601 and B158DRAFT_1602 are separated by 30 nucleotides B158DRAFT_1602 and B158DRAFT_1603 are separated by 91 nucleotides B158DRAFT_1603 and B158DRAFT_1604 are separated by 119 nucleotides
B158DRAFT_1601: B158DRAFT_1601 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 1,660,916 to 1,661,686
_1601
B158DRAFT_1602: B158DRAFT_1602 - Protein-tyrosine-phosphatase, at 1,661,717 to 1,662,202
_1602
B158DRAFT_1603: B158DRAFT_1603 - arginyl-tRNA synthetase (EC 6.1.1.19), at 1,662,294 to 1,664,060
_1603
B158DRAFT_1604: B158DRAFT_1604 - succinate-semialdehyde dehydrogenase, at 1,664,180 to 1,665,613
_1604
Position (kb)
1662
1663
1664
1665 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1661.644 kb on + strand at 1661.670 kb on - strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.708 kb on + strand at 1661.716 kb on - strand at 1661.716 kb on - strand at 1661.716 kb on - strand at 1661.749 kb on + strand at 1661.749 kb on + strand at 1661.755 kb on + strand at 1661.757 kb on - strand at 1661.780 kb on - strand, within B158DRAFT_1602 at 1661.818 kb on - strand, within B158DRAFT_1602 at 1661.828 kb on - strand, within B158DRAFT_1602 at 1661.850 kb on + strand, within B158DRAFT_1602 at 1661.853 kb on - strand, within B158DRAFT_1602 at 1661.853 kb on - strand, within B158DRAFT_1602 at 1661.877 kb on + strand, within B158DRAFT_1602 at 1661.885 kb on - strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.909 kb on + strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.917 kb on - strand, within B158DRAFT_1602 at 1661.931 kb on + strand, within B158DRAFT_1602 at 1661.931 kb on + strand, within B158DRAFT_1602 at 1661.931 kb on + strand, within B158DRAFT_1602 at 1661.936 kb on + strand, within B158DRAFT_1602 at 1661.939 kb on - strand, within B158DRAFT_1602 at 1661.939 kb on - strand, within B158DRAFT_1602 at 1661.939 kb on - strand, within B158DRAFT_1602 at 1661.939 kb on - strand, within B158DRAFT_1602 at 1661.941 kb on + strand, within B158DRAFT_1602 at 1661.942 kb on - strand, within B158DRAFT_1602 at 1661.974 kb on + strand, within B158DRAFT_1602 at 1661.982 kb on - strand, within B158DRAFT_1602 at 1662.007 kb on - strand, within B158DRAFT_1602 at 1662.024 kb on - strand, within B158DRAFT_1602 at 1662.103 kb on + strand, within B158DRAFT_1602 at 1662.103 kb on + strand, within B158DRAFT_1602 at 1662.103 kb on - strand, within B158DRAFT_1602 at 1662.111 kb on - strand, within B158DRAFT_1602 at 1662.148 kb on + strand, within B158DRAFT_1602 at 1662.156 kb on - strand at 1662.156 kb on - strand at 1662.170 kb on - strand at 1662.227 kb on + strand at 1662.236 kb on + strand at 1662.236 kb on + strand at 1664.084 kb on + strand at 1664.101 kb on + strand at 1664.101 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.103 kb on + strand at 1664.109 kb on - strand at 1664.109 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.111 kb on - strand at 1664.195 kb on + strand at 1664.276 kb on - strand at 1664.308 kb on - strand at 1664.331 kb on - strand, within B158DRAFT_1604 at 1664.333 kb on + strand, within B158DRAFT_1604 at 1664.335 kb on + strand, within B158DRAFT_1604 at 1664.367 kb on - strand, within B158DRAFT_1604 at 1664.372 kb on + strand, within B158DRAFT_1604 at 1664.382 kb on + strand, within B158DRAFT_1604 at 1664.390 kb on + strand, within B158DRAFT_1604 at 1664.390 kb on - strand, within B158DRAFT_1604 at 1664.398 kb on - strand, within B158DRAFT_1604 at 1664.400 kb on + strand, within B158DRAFT_1604 at 1664.453 kb on + strand, within B158DRAFT_1604 at 1664.453 kb on + strand, within B158DRAFT_1604 at 1664.458 kb on + strand, within B158DRAFT_1604 at 1664.458 kb on + strand, within B158DRAFT_1604 at 1664.458 kb on + strand, within B158DRAFT_1604 at 1664.458 kb on + strand, within B158DRAFT_1604 at 1664.458 kb on + strand, within B158DRAFT_1604 at 1664.461 kb on - strand, within B158DRAFT_1604 at 1664.461 kb on - strand, within B158DRAFT_1604 at 1664.461 kb on - strand, within B158DRAFT_1604 at 1664.466 kb on + strand, within B158DRAFT_1604 at 1664.466 kb on - strand, within B158DRAFT_1604 at 1664.466 kb on - strand, within B158DRAFT_1604 at 1664.466 kb on - strand, within B158DRAFT_1604 at 1664.466 kb on - strand, within B158DRAFT_1604 at 1664.466 kb on - strand, within B158DRAFT_1604 at 1664.466 kb on - strand, within B158DRAFT_1604 at 1664.516 kb on - strand, within B158DRAFT_1604 at 1664.539 kb on - strand, within B158DRAFT_1604 at 1664.627 kb on + strand, within B158DRAFT_1604 at 1664.627 kb on + strand, within B158DRAFT_1604 at 1664.635 kb on - strand, within B158DRAFT_1604 at 1664.661 kb on + strand, within B158DRAFT_1604 at 1664.683 kb on + strand, within B158DRAFT_1604 at 1664.698 kb on + strand, within B158DRAFT_1604 at 1664.706 kb on - strand, within B158DRAFT_1604 at 1664.727 kb on - strand, within B158DRAFT_1604 at 1664.729 kb on + strand, within B158DRAFT_1604 at 1664.729 kb on + strand, within B158DRAFT_1604 at 1664.734 kb on + strand, within B158DRAFT_1604 at 1664.742 kb on - strand, within B158DRAFT_1604 at 1664.747 kb on - strand, within B158DRAFT_1604 at 1664.789 kb on + strand, within B158DRAFT_1604 at 1664.796 kb on + strand, within B158DRAFT_1604 at 1664.806 kb on - strand, within B158DRAFT_1604 at 1664.830 kb on - strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.835 kb on + strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.843 kb on - strand, within B158DRAFT_1604 at 1664.885 kb on + strand, within B158DRAFT_1604 at 1664.903 kb on + strand, within B158DRAFT_1604 at 1664.911 kb on - strand, within B158DRAFT_1604 at 1664.972 kb on + strand, within B158DRAFT_1604 at 1664.980 kb on - strand, within B158DRAFT_1604 at 1664.995 kb on - strand, within B158DRAFT_1604 at 1664.995 kb on - strand, within B158DRAFT_1604 at 1665.023 kb on + strand, within B158DRAFT_1604 at 1665.023 kb on + strand, within B158DRAFT_1604 at 1665.037 kb on - strand, within B158DRAFT_1604 at 1665.050 kb on + strand, within B158DRAFT_1604
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,661,644 + -2.2 1,661,670 - +0.7 1,661,708 + +0.1 1,661,708 + +0.8 1,661,708 + +0.7 1,661,708 + -1.1 1,661,708 + -2.0 1,661,708 + -0.4 1,661,708 + +0.1 1,661,708 + -1.2 1,661,708 + -1.0 1,661,716 - -1.6 1,661,716 - +1.0 1,661,716 - -0.8 1,661,749 + -0.6 1,661,749 + -0.2 1,661,755 + -1.3 1,661,757 - -1.5 1,661,780 - B158DRAFT_1602 0.13 -0.4 1,661,818 - B158DRAFT_1602 0.21 -0.3 1,661,828 - B158DRAFT_1602 0.23 +2.3 1,661,850 + B158DRAFT_1602 0.27 +0.0 1,661,853 - B158DRAFT_1602 0.28 -2.1 1,661,853 - B158DRAFT_1602 0.28 -0.5 1,661,877 + B158DRAFT_1602 0.33 -0.7 1,661,885 - B158DRAFT_1602 0.35 +0.3 1,661,909 + B158DRAFT_1602 0.40 -0.0 1,661,909 + B158DRAFT_1602 0.40 -0.0 1,661,909 + B158DRAFT_1602 0.40 -0.8 1,661,909 + B158DRAFT_1602 0.40 -1.1 1,661,909 + B158DRAFT_1602 0.40 +0.1 1,661,909 + B158DRAFT_1602 0.40 +0.1 1,661,909 + B158DRAFT_1602 0.40 -0.6 1,661,909 + B158DRAFT_1602 0.40 -0.4 1,661,909 + B158DRAFT_1602 0.40 +0.5 1,661,909 + B158DRAFT_1602 0.40 +2.6 1,661,909 + B158DRAFT_1602 0.40 -0.2 1,661,909 + B158DRAFT_1602 0.40 +0.4 1,661,909 + B158DRAFT_1602 0.40 -1.3 1,661,909 + B158DRAFT_1602 0.40 +0.2 1,661,909 + B158DRAFT_1602 0.40 -1.6 1,661,909 + B158DRAFT_1602 0.40 +1.5 1,661,909 + B158DRAFT_1602 0.40 -0.9 1,661,909 + B158DRAFT_1602 0.40 -1.0 1,661,909 + B158DRAFT_1602 0.40 -0.7 1,661,909 + B158DRAFT_1602 0.40 -0.0 1,661,909 + B158DRAFT_1602 0.40 +0.7 1,661,909 + B158DRAFT_1602 0.40 -1.0 1,661,909 + B158DRAFT_1602 0.40 -1.0 1,661,917 - B158DRAFT_1602 0.41 +1.1 1,661,917 - B158DRAFT_1602 0.41 -1.3 1,661,917 - B158DRAFT_1602 0.41 -0.7 1,661,917 - B158DRAFT_1602 0.41 -1.4 1,661,917 - B158DRAFT_1602 0.41 -0.8 1,661,917 - B158DRAFT_1602 0.41 -0.7 1,661,917 - B158DRAFT_1602 0.41 +0.5 1,661,917 - B158DRAFT_1602 0.41 +0.7 1,661,917 - B158DRAFT_1602 0.41 -0.8 1,661,917 - B158DRAFT_1602 0.41 +3.4 1,661,917 - B158DRAFT_1602 0.41 +0.7 1,661,917 - B158DRAFT_1602 0.41 -0.3 1,661,917 - B158DRAFT_1602 0.41 -0.8 1,661,917 - B158DRAFT_1602 0.41 +0.5 1,661,917 - B158DRAFT_1602 0.41 +1.3 1,661,917 - B158DRAFT_1602 0.41 -2.4 1,661,917 - B158DRAFT_1602 0.41 -1.4 1,661,917 - B158DRAFT_1602 0.41 -1.9 1,661,917 - B158DRAFT_1602 0.41 +0.3 1,661,917 - B158DRAFT_1602 0.41 -0.4 1,661,931 + B158DRAFT_1602 0.44 +0.3 1,661,931 + B158DRAFT_1602 0.44 -0.1 1,661,931 + B158DRAFT_1602 0.44 -1.0 1,661,936 + B158DRAFT_1602 0.45 +1.9 1,661,939 - B158DRAFT_1602 0.46 -1.3 1,661,939 - B158DRAFT_1602 0.46 +0.1 1,661,939 - B158DRAFT_1602 0.46 -0.8 1,661,939 - B158DRAFT_1602 0.46 -1.9 1,661,941 + B158DRAFT_1602 0.46 -0.2 1,661,942 - B158DRAFT_1602 0.46 -0.5 1,661,974 + B158DRAFT_1602 0.53 -1.1 1,661,982 - B158DRAFT_1602 0.55 -0.3 1,662,007 - B158DRAFT_1602 0.60 +0.7 1,662,024 - B158DRAFT_1602 0.63 -0.1 1,662,103 + B158DRAFT_1602 0.79 +4.5 1,662,103 + B158DRAFT_1602 0.79 -0.1 1,662,103 - B158DRAFT_1602 0.79 +1.2 1,662,111 - B158DRAFT_1602 0.81 -1.1 1,662,148 + B158DRAFT_1602 0.89 +1.1 1,662,156 - -0.3 1,662,156 - -2.3 1,662,170 - -2.2 1,662,227 + +1.3 1,662,236 + -0.7 1,662,236 + +0.2 1,664,084 + -0.5 1,664,101 + -0.8 1,664,101 + -0.2 1,664,103 + +2.3 1,664,103 + -0.6 1,664,103 + -0.5 1,664,103 + +0.1 1,664,103 + +0.3 1,664,103 + +0.4 1,664,103 + +0.8 1,664,103 + +0.9 1,664,103 + +1.7 1,664,103 + -0.3 1,664,103 + -0.0 1,664,109 - -1.9 1,664,109 - -0.3 1,664,111 - +0.4 1,664,111 - -1.3 1,664,111 - -0.1 1,664,111 - -0.5 1,664,111 - -0.4 1,664,111 - -0.3 1,664,111 - -1.2 1,664,111 - -0.8 1,664,111 - +0.7 1,664,111 - -0.1 1,664,195 + -1.3 1,664,276 - -1.2 1,664,308 - -0.5 1,664,331 - B158DRAFT_1604 0.11 +1.6 1,664,333 + B158DRAFT_1604 0.11 +0.3 1,664,335 + B158DRAFT_1604 0.11 -0.0 1,664,367 - B158DRAFT_1604 0.13 -1.0 1,664,372 + B158DRAFT_1604 0.13 -0.5 1,664,382 + B158DRAFT_1604 0.14 +0.3 1,664,390 + B158DRAFT_1604 0.15 -0.0 1,664,390 - B158DRAFT_1604 0.15 -1.4 1,664,398 - B158DRAFT_1604 0.15 +0.9 1,664,400 + B158DRAFT_1604 0.15 +0.7 1,664,453 + B158DRAFT_1604 0.19 -0.2 1,664,453 + B158DRAFT_1604 0.19 -1.0 1,664,458 + B158DRAFT_1604 0.19 -0.3 1,664,458 + B158DRAFT_1604 0.19 +0.3 1,664,458 + B158DRAFT_1604 0.19 +0.1 1,664,458 + B158DRAFT_1604 0.19 +0.4 1,664,458 + B158DRAFT_1604 0.19 -1.4 1,664,461 - B158DRAFT_1604 0.20 +0.1 1,664,461 - B158DRAFT_1604 0.20 -1.1 1,664,461 - B158DRAFT_1604 0.20 +0.4 1,664,466 + B158DRAFT_1604 0.20 -0.2 1,664,466 - B158DRAFT_1604 0.20 -0.3 1,664,466 - B158DRAFT_1604 0.20 +0.6 1,664,466 - B158DRAFT_1604 0.20 +2.1 1,664,466 - B158DRAFT_1604 0.20 -0.6 1,664,466 - B158DRAFT_1604 0.20 -1.7 1,664,466 - B158DRAFT_1604 0.20 -1.2 1,664,516 - B158DRAFT_1604 0.23 +1.7 1,664,539 - B158DRAFT_1604 0.25 -0.7 1,664,627 + B158DRAFT_1604 0.31 -1.2 1,664,627 + B158DRAFT_1604 0.31 -0.2 1,664,635 - B158DRAFT_1604 0.32 -0.2 1,664,661 + B158DRAFT_1604 0.34 +1.7 1,664,683 + B158DRAFT_1604 0.35 -0.7 1,664,698 + B158DRAFT_1604 0.36 +1.0 1,664,706 - B158DRAFT_1604 0.37 -0.6 1,664,727 - B158DRAFT_1604 0.38 +0.4 1,664,729 + B158DRAFT_1604 0.38 -1.3 1,664,729 + B158DRAFT_1604 0.38 -1.2 1,664,734 + B158DRAFT_1604 0.39 -0.1 1,664,742 - B158DRAFT_1604 0.39 -0.0 1,664,747 - B158DRAFT_1604 0.40 +0.7 1,664,789 + B158DRAFT_1604 0.42 -0.7 1,664,796 + B158DRAFT_1604 0.43 -0.7 1,664,806 - B158DRAFT_1604 0.44 +0.7 1,664,830 - B158DRAFT_1604 0.45 -0.8 1,664,835 + B158DRAFT_1604 0.46 -1.7 1,664,835 + B158DRAFT_1604 0.46 -0.3 1,664,835 + B158DRAFT_1604 0.46 -0.9 1,664,835 + B158DRAFT_1604 0.46 -0.5 1,664,835 + B158DRAFT_1604 0.46 +0.8 1,664,835 + B158DRAFT_1604 0.46 +0.1 1,664,835 + B158DRAFT_1604 0.46 -1.2 1,664,835 + B158DRAFT_1604 0.46 -1.6 1,664,835 + B158DRAFT_1604 0.46 -0.2 1,664,835 + B158DRAFT_1604 0.46 -1.0 1,664,835 + B158DRAFT_1604 0.46 -0.9 1,664,835 + B158DRAFT_1604 0.46 -0.9 1,664,843 - B158DRAFT_1604 0.46 -1.4 1,664,843 - B158DRAFT_1604 0.46 +0.5 1,664,843 - B158DRAFT_1604 0.46 -0.0 1,664,843 - B158DRAFT_1604 0.46 -2.4 1,664,843 - B158DRAFT_1604 0.46 -0.1 1,664,843 - B158DRAFT_1604 0.46 +0.2 1,664,843 - B158DRAFT_1604 0.46 -1.0 1,664,843 - B158DRAFT_1604 0.46 -0.0 1,664,843 - B158DRAFT_1604 0.46 +3.0 1,664,885 + B158DRAFT_1604 0.49 -1.3 1,664,903 + B158DRAFT_1604 0.50 -2.2 1,664,911 - B158DRAFT_1604 0.51 -1.1 1,664,972 + B158DRAFT_1604 0.55 -0.8 1,664,980 - B158DRAFT_1604 0.56 -1.6 1,664,995 - B158DRAFT_1604 0.57 +0.0 1,664,995 - B158DRAFT_1604 0.57 -2.2 1,665,023 + B158DRAFT_1604 0.59 -0.7 1,665,023 + B158DRAFT_1604 0.59 -0.9 1,665,037 - B158DRAFT_1604 0.60 -1.0 1,665,050 + B158DRAFT_1604 0.61 -1.0
Or see this region's nucleotide sequence