Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1602

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1599 and B158DRAFT_1600 overlap by 11 nucleotidesB158DRAFT_1600 and B158DRAFT_1601 overlap by 11 nucleotidesB158DRAFT_1601 and B158DRAFT_1602 are separated by 30 nucleotidesB158DRAFT_1602 and B158DRAFT_1603 are separated by 91 nucleotides B158DRAFT_1599: B158DRAFT_1599 - lipid-A-disaccharide kinase (EC 2.7.1.130), at 1,659,786 to 1,660,751 _1599 B158DRAFT_1600: B158DRAFT_1600 - Uncharacterized conserved protein, at 1,660,741 to 1,660,926 _1600 B158DRAFT_1601: B158DRAFT_1601 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 1,660,916 to 1,661,686 _1601 B158DRAFT_1602: B158DRAFT_1602 - Protein-tyrosine-phosphatase, at 1,661,717 to 1,662,202 _1602 B158DRAFT_1603: B158DRAFT_1603 - arginyl-tRNA synthetase (EC 6.1.1.19), at 1,662,294 to 1,664,060 _1603 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1660.724 kb on + strandat 1660.724 kb on + strandat 1661.644 kb on + strandat 1661.670 kb on - strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.708 kb on + strandat 1661.716 kb on - strandat 1661.716 kb on - strandat 1661.716 kb on - strandat 1661.749 kb on + strandat 1661.749 kb on + strandat 1661.755 kb on + strandat 1661.757 kb on - strandat 1661.780 kb on - strand, within B158DRAFT_1602at 1661.818 kb on - strand, within B158DRAFT_1602at 1661.828 kb on - strand, within B158DRAFT_1602at 1661.850 kb on + strand, within B158DRAFT_1602at 1661.853 kb on - strand, within B158DRAFT_1602at 1661.853 kb on - strand, within B158DRAFT_1602at 1661.877 kb on + strand, within B158DRAFT_1602at 1661.885 kb on - strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.909 kb on + strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.917 kb on - strand, within B158DRAFT_1602at 1661.931 kb on + strand, within B158DRAFT_1602at 1661.931 kb on + strand, within B158DRAFT_1602at 1661.931 kb on + strand, within B158DRAFT_1602at 1661.936 kb on + strand, within B158DRAFT_1602at 1661.939 kb on - strand, within B158DRAFT_1602at 1661.939 kb on - strand, within B158DRAFT_1602at 1661.939 kb on - strand, within B158DRAFT_1602at 1661.939 kb on - strand, within B158DRAFT_1602at 1661.941 kb on + strand, within B158DRAFT_1602at 1661.942 kb on - strand, within B158DRAFT_1602at 1661.974 kb on + strand, within B158DRAFT_1602at 1661.982 kb on - strand, within B158DRAFT_1602at 1662.007 kb on - strand, within B158DRAFT_1602at 1662.024 kb on - strand, within B158DRAFT_1602at 1662.103 kb on + strand, within B158DRAFT_1602at 1662.103 kb on + strand, within B158DRAFT_1602at 1662.103 kb on - strand, within B158DRAFT_1602at 1662.111 kb on - strand, within B158DRAFT_1602at 1662.148 kb on + strand, within B158DRAFT_1602at 1662.156 kb on - strandat 1662.156 kb on - strandat 1662.170 kb on - strandat 1662.227 kb on + strandat 1662.236 kb on + strandat 1662.236 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
1,660,724 + +0.4
1,660,724 + +0.2
1,661,644 + -2.2
1,661,670 - +0.7
1,661,708 + +0.1
1,661,708 + +0.8
1,661,708 + +0.7
1,661,708 + -1.1
1,661,708 + -2.0
1,661,708 + -0.4
1,661,708 + +0.1
1,661,708 + -1.2
1,661,708 + -1.0
1,661,716 - -1.6
1,661,716 - +1.0
1,661,716 - -0.8
1,661,749 + -0.6
1,661,749 + -0.2
1,661,755 + -1.3
1,661,757 - -1.5
1,661,780 - B158DRAFT_1602 0.13 -0.4
1,661,818 - B158DRAFT_1602 0.21 -0.3
1,661,828 - B158DRAFT_1602 0.23 +2.3
1,661,850 + B158DRAFT_1602 0.27 +0.0
1,661,853 - B158DRAFT_1602 0.28 -2.1
1,661,853 - B158DRAFT_1602 0.28 -0.5
1,661,877 + B158DRAFT_1602 0.33 -0.7
1,661,885 - B158DRAFT_1602 0.35 +0.3
1,661,909 + B158DRAFT_1602 0.40 -0.0
1,661,909 + B158DRAFT_1602 0.40 -0.0
1,661,909 + B158DRAFT_1602 0.40 -0.8
1,661,909 + B158DRAFT_1602 0.40 -1.1
1,661,909 + B158DRAFT_1602 0.40 +0.1
1,661,909 + B158DRAFT_1602 0.40 +0.1
1,661,909 + B158DRAFT_1602 0.40 -0.6
1,661,909 + B158DRAFT_1602 0.40 -0.4
1,661,909 + B158DRAFT_1602 0.40 +0.5
1,661,909 + B158DRAFT_1602 0.40 +2.6
1,661,909 + B158DRAFT_1602 0.40 -0.2
1,661,909 + B158DRAFT_1602 0.40 +0.4
1,661,909 + B158DRAFT_1602 0.40 -1.3
1,661,909 + B158DRAFT_1602 0.40 +0.2
1,661,909 + B158DRAFT_1602 0.40 -1.6
1,661,909 + B158DRAFT_1602 0.40 +1.5
1,661,909 + B158DRAFT_1602 0.40 -0.9
1,661,909 + B158DRAFT_1602 0.40 -1.0
1,661,909 + B158DRAFT_1602 0.40 -0.7
1,661,909 + B158DRAFT_1602 0.40 -0.0
1,661,909 + B158DRAFT_1602 0.40 +0.7
1,661,909 + B158DRAFT_1602 0.40 -1.0
1,661,909 + B158DRAFT_1602 0.40 -1.0
1,661,917 - B158DRAFT_1602 0.41 +1.1
1,661,917 - B158DRAFT_1602 0.41 -1.3
1,661,917 - B158DRAFT_1602 0.41 -0.7
1,661,917 - B158DRAFT_1602 0.41 -1.4
1,661,917 - B158DRAFT_1602 0.41 -0.8
1,661,917 - B158DRAFT_1602 0.41 -0.7
1,661,917 - B158DRAFT_1602 0.41 +0.5
1,661,917 - B158DRAFT_1602 0.41 +0.7
1,661,917 - B158DRAFT_1602 0.41 -0.8
1,661,917 - B158DRAFT_1602 0.41 +3.4
1,661,917 - B158DRAFT_1602 0.41 +0.7
1,661,917 - B158DRAFT_1602 0.41 -0.3
1,661,917 - B158DRAFT_1602 0.41 -0.8
1,661,917 - B158DRAFT_1602 0.41 +0.5
1,661,917 - B158DRAFT_1602 0.41 +1.3
1,661,917 - B158DRAFT_1602 0.41 -2.4
1,661,917 - B158DRAFT_1602 0.41 -1.4
1,661,917 - B158DRAFT_1602 0.41 -1.9
1,661,917 - B158DRAFT_1602 0.41 +0.3
1,661,917 - B158DRAFT_1602 0.41 -0.4
1,661,931 + B158DRAFT_1602 0.44 +0.3
1,661,931 + B158DRAFT_1602 0.44 -0.1
1,661,931 + B158DRAFT_1602 0.44 -1.0
1,661,936 + B158DRAFT_1602 0.45 +1.9
1,661,939 - B158DRAFT_1602 0.46 -1.3
1,661,939 - B158DRAFT_1602 0.46 +0.1
1,661,939 - B158DRAFT_1602 0.46 -0.8
1,661,939 - B158DRAFT_1602 0.46 -1.9
1,661,941 + B158DRAFT_1602 0.46 -0.2
1,661,942 - B158DRAFT_1602 0.46 -0.5
1,661,974 + B158DRAFT_1602 0.53 -1.1
1,661,982 - B158DRAFT_1602 0.55 -0.3
1,662,007 - B158DRAFT_1602 0.60 +0.7
1,662,024 - B158DRAFT_1602 0.63 -0.1
1,662,103 + B158DRAFT_1602 0.79 +4.5
1,662,103 + B158DRAFT_1602 0.79 -0.1
1,662,103 - B158DRAFT_1602 0.79 +1.2
1,662,111 - B158DRAFT_1602 0.81 -1.1
1,662,148 + B158DRAFT_1602 0.89 +1.1
1,662,156 - -0.3
1,662,156 - -2.3
1,662,170 - -2.2
1,662,227 + +1.3
1,662,236 + -0.7
1,662,236 + +0.2

Or see this region's nucleotide sequence