Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1544

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1543 and B158DRAFT_1544 are separated by 162 nucleotidesB158DRAFT_1544 and B158DRAFT_1546 are separated by 308 nucleotidesB158DRAFT_1546 and B158DRAFT_1547 are separated by 301 nucleotides B158DRAFT_1543: B158DRAFT_1543 - Multidrug resistance efflux pump, at 1,599,341 to 1,600,543 _1543 B158DRAFT_1544: B158DRAFT_1544 - tRNA_Arg_ACG, at 1,600,706 to 1,600,782 _1544 B158DRAFT_1546: B158DRAFT_1546 - hypothetical protein, at 1,601,091 to 1,601,315 _1546 B158DRAFT_1547: B158DRAFT_1547 - hypothetical protein, at 1,601,617 to 1,602,090 _1547 Position (kb) 1600 1601Strain fitness (log2 ratio) -3 -2 -1 0 1at 1599.757 kb on + strand, within B158DRAFT_1543at 1599.799 kb on + strand, within B158DRAFT_1543at 1599.881 kb on + strand, within B158DRAFT_1543at 1599.889 kb on - strand, within B158DRAFT_1543at 1599.891 kb on - strand, within B158DRAFT_1543at 1599.893 kb on + strand, within B158DRAFT_1543at 1599.939 kb on - strand, within B158DRAFT_1543at 1599.956 kb on - strand, within B158DRAFT_1543at 1599.977 kb on + strand, within B158DRAFT_1543at 1599.985 kb on - strand, within B158DRAFT_1543at 1599.991 kb on - strand, within B158DRAFT_1543at 1599.999 kb on + strand, within B158DRAFT_1543at 1600.009 kb on + strand, within B158DRAFT_1543at 1600.009 kb on + strand, within B158DRAFT_1543at 1600.009 kb on + strand, within B158DRAFT_1543at 1600.017 kb on - strand, within B158DRAFT_1543at 1600.017 kb on - strand, within B158DRAFT_1543at 1600.127 kb on + strand, within B158DRAFT_1543at 1600.145 kb on + strand, within B158DRAFT_1543at 1600.172 kb on - strand, within B158DRAFT_1543at 1600.199 kb on + strand, within B158DRAFT_1543at 1600.229 kb on - strand, within B158DRAFT_1543at 1600.229 kb on - strand, within B158DRAFT_1543at 1600.238 kb on + strand, within B158DRAFT_1543at 1600.248 kb on + strand, within B158DRAFT_1543at 1600.248 kb on + strand, within B158DRAFT_1543at 1600.250 kb on + strand, within B158DRAFT_1543at 1600.256 kb on - strand, within B158DRAFT_1543at 1600.256 kb on - strand, within B158DRAFT_1543at 1600.321 kb on - strand, within B158DRAFT_1543at 1600.334 kb on - strand, within B158DRAFT_1543at 1600.385 kb on + strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.393 kb on - strand, within B158DRAFT_1543at 1600.411 kb on - strand, within B158DRAFT_1543at 1600.413 kb on + strand, within B158DRAFT_1543at 1600.420 kb on + strand, within B158DRAFT_1543at 1600.421 kb on - strand, within B158DRAFT_1543at 1600.421 kb on - strand, within B158DRAFT_1543at 1600.461 kb on + strandat 1600.461 kb on + strandat 1600.469 kb on - strandat 1600.833 kb on + strandat 1600.840 kb on - strandat 1601.009 kb on - strandat 1601.009 kb on - strandat 1601.057 kb on - strandat 1601.067 kb on - strandat 1601.087 kb on - strandat 1601.283 kb on - strand, within B158DRAFT_1546at 1601.338 kb on + strandat 1601.340 kb on - strandat 1601.415 kb on - strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.427 kb on - strandat 1601.454 kb on + strandat 1601.462 kb on - strandat 1601.564 kb on + strandat 1601.564 kb on + strandat 1601.564 kb on + strandat 1601.571 kb on + strandat 1601.572 kb on - strandat 1601.572 kb on - strandat 1601.589 kb on - strandat 1601.658 kb on + strandat 1601.666 kb on - strand, within B158DRAFT_1547at 1601.677 kb on + strand, within B158DRAFT_1547at 1601.677 kb on + strand, within B158DRAFT_1547at 1601.677 kb on + strand, within B158DRAFT_1547at 1601.685 kb on - strand, within B158DRAFT_1547at 1601.685 kb on - strand, within B158DRAFT_1547

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,599,757 + B158DRAFT_1543 0.35 -0.9
1,599,799 + B158DRAFT_1543 0.38 -0.6
1,599,881 + B158DRAFT_1543 0.45 -0.5
1,599,889 - B158DRAFT_1543 0.46 -2.3
1,599,891 - B158DRAFT_1543 0.46 -1.2
1,599,893 + B158DRAFT_1543 0.46 -0.4
1,599,939 - B158DRAFT_1543 0.50 -1.8
1,599,956 - B158DRAFT_1543 0.51 -0.7
1,599,977 + B158DRAFT_1543 0.53 -1.1
1,599,985 - B158DRAFT_1543 0.54 +1.0
1,599,991 - B158DRAFT_1543 0.54 -0.8
1,599,999 + B158DRAFT_1543 0.55 -0.8
1,600,009 + B158DRAFT_1543 0.56 -0.3
1,600,009 + B158DRAFT_1543 0.56 +0.1
1,600,009 + B158DRAFT_1543 0.56 -1.0
1,600,017 - B158DRAFT_1543 0.56 -0.0
1,600,017 - B158DRAFT_1543 0.56 +0.1
1,600,127 + B158DRAFT_1543 0.65 +0.2
1,600,145 + B158DRAFT_1543 0.67 -0.3
1,600,172 - B158DRAFT_1543 0.69 -0.3
1,600,199 + B158DRAFT_1543 0.71 +0.8
1,600,229 - B158DRAFT_1543 0.74 -1.6
1,600,229 - B158DRAFT_1543 0.74 -1.2
1,600,238 + B158DRAFT_1543 0.75 -1.8
1,600,248 + B158DRAFT_1543 0.75 -2.1
1,600,248 + B158DRAFT_1543 0.75 +1.3
1,600,250 + B158DRAFT_1543 0.76 -0.0
1,600,256 - B158DRAFT_1543 0.76 +0.5
1,600,256 - B158DRAFT_1543 0.76 +0.3
1,600,321 - B158DRAFT_1543 0.81 -1.0
1,600,334 - B158DRAFT_1543 0.83 -1.4
1,600,385 + B158DRAFT_1543 0.87 -1.7
1,600,391 - B158DRAFT_1543 0.87 +0.1
1,600,391 - B158DRAFT_1543 0.87 -0.8
1,600,391 - B158DRAFT_1543 0.87 -0.3
1,600,393 - B158DRAFT_1543 0.87 +1.0
1,600,411 - B158DRAFT_1543 0.89 -1.2
1,600,413 + B158DRAFT_1543 0.89 -0.3
1,600,420 + B158DRAFT_1543 0.90 -0.8
1,600,421 - B158DRAFT_1543 0.90 -0.7
1,600,421 - B158DRAFT_1543 0.90 -0.7
1,600,461 + -0.5
1,600,461 + -0.5
1,600,469 - -1.0
1,600,833 + -0.7
1,600,840 - -0.2
1,601,009 - +0.9
1,601,009 - -0.6
1,601,057 - -1.5
1,601,067 - -0.1
1,601,087 - -0.7
1,601,283 - B158DRAFT_1546 0.85 -1.8
1,601,338 + -0.2
1,601,340 - +0.3
1,601,415 - -0.1
1,601,419 + -0.0
1,601,419 + -0.3
1,601,419 + -0.4
1,601,419 + -0.8
1,601,427 - +0.8
1,601,454 + -1.6
1,601,462 - +0.5
1,601,564 + -1.3
1,601,564 + -1.8
1,601,564 + -1.3
1,601,571 + +0.4
1,601,572 - -0.2
1,601,572 - -0.0
1,601,589 - -3.0
1,601,658 + -0.5
1,601,666 - B158DRAFT_1547 0.10 -0.7
1,601,677 + B158DRAFT_1547 0.13 -1.5
1,601,677 + B158DRAFT_1547 0.13 -0.9
1,601,677 + B158DRAFT_1547 0.13 -0.5
1,601,685 - B158DRAFT_1547 0.14 +0.3
1,601,685 - B158DRAFT_1547 0.14 -0.3

Or see this region's nucleotide sequence