Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1419 and B158DRAFT_1420 are separated by 338 nucleotides B158DRAFT_1420 and B158DRAFT_1421 overlap by 10 nucleotides B158DRAFT_1421 and B158DRAFT_1422 are separated by 3 nucleotides
B158DRAFT_1419: B158DRAFT_1419 - citrate synthase (EC 2.3.3.1), at 1,465,252 to 1,466,541
_1419
B158DRAFT_1420: B158DRAFT_1420 - succinate dehydrogenase subunit C (EC 1.3.5.1), at 1,466,880 to 1,467,257
_1420
B158DRAFT_1421: B158DRAFT_1421 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,467,248 to 1,467,601
_1421
B158DRAFT_1422: B158DRAFT_1422 - succinate dehydrogenase subunit A (EC 1.3.5.1), at 1,467,605 to 1,469,383
_1422
Position (kb)
1467
1468 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1466.252 kb on - strand, within B158DRAFT_1419 at 1466.314 kb on + strand, within B158DRAFT_1419 at 1466.316 kb on + strand, within B158DRAFT_1419 at 1466.316 kb on + strand, within B158DRAFT_1419 at 1466.316 kb on + strand, within B158DRAFT_1419 at 1466.324 kb on - strand, within B158DRAFT_1419 at 1466.324 kb on - strand, within B158DRAFT_1419 at 1466.499 kb on - strand at 1466.549 kb on + strand at 1466.598 kb on - strand at 1466.600 kb on + strand at 1466.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,466,252 - B158DRAFT_1419 0.78 +3.3 1,466,314 + B158DRAFT_1419 0.82 +3.3 1,466,316 + B158DRAFT_1419 0.82 +2.6 1,466,316 + B158DRAFT_1419 0.82 +3.6 1,466,316 + B158DRAFT_1419 0.82 +3.0 1,466,324 - B158DRAFT_1419 0.83 +3.5 1,466,324 - B158DRAFT_1419 0.83 +4.1 1,466,499 - +3.4 1,466,549 + +3.1 1,466,598 - +2.4 1,466,600 + +2.6 1,466,610 - +2.6
Or see this region's nucleotide sequence