Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1344 and B158DRAFT_1345 are separated by 390 nucleotides B158DRAFT_1345 and B158DRAFT_1346 are separated by 60 nucleotides
B158DRAFT_1344: B158DRAFT_1344 - 2-methylcitrate synthase (EC 2.3.3.5), at 1,387,005 to 1,388,144
_1344
B158DRAFT_1345: B158DRAFT_1345 - aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent, at 1,388,535 to 1,391,123
_1345
B158DRAFT_1346: B158DRAFT_1346 - 2-methylaconitate cis-trans isomerase, at 1,391,184 to 1,392,398
_1346
Position (kb)
1388
1389
1390
1391
1392 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1387.545 kb on + strand, within B158DRAFT_1344 at 1387.553 kb on - strand, within B158DRAFT_1344 at 1387.553 kb on - strand, within B158DRAFT_1344 at 1387.570 kb on - strand, within B158DRAFT_1344 at 1387.572 kb on + strand, within B158DRAFT_1344 at 1387.580 kb on - strand, within B158DRAFT_1344 at 1387.588 kb on - strand, within B158DRAFT_1344 at 1387.588 kb on - strand, within B158DRAFT_1344 at 1387.593 kb on + strand, within B158DRAFT_1344 at 1387.629 kb on + strand, within B158DRAFT_1344 at 1387.629 kb on + strand, within B158DRAFT_1344 at 1387.631 kb on - strand, within B158DRAFT_1344 at 1387.632 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.672 kb on + strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.687 kb on - strand, within B158DRAFT_1344 at 1387.719 kb on + strand, within B158DRAFT_1344 at 1387.719 kb on + strand, within B158DRAFT_1344 at 1387.727 kb on - strand, within B158DRAFT_1344 at 1387.727 kb on - strand, within B158DRAFT_1344 at 1387.729 kb on + strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.803 kb on + strand, within B158DRAFT_1344 at 1387.810 kb on - strand, within B158DRAFT_1344 at 1387.891 kb on + strand, within B158DRAFT_1344 at 1388.058 kb on - strand at 1388.422 kb on + strand at 1389.025 kb on - strand, within B158DRAFT_1345 at 1389.279 kb on + strand, within B158DRAFT_1345 at 1389.454 kb on - strand, within B158DRAFT_1345 at 1390.453 kb on - strand, within B158DRAFT_1345 at 1390.568 kb on + strand, within B158DRAFT_1345 at 1390.568 kb on + strand, within B158DRAFT_1345 at 1390.576 kb on - strand, within B158DRAFT_1345 at 1390.764 kb on + strand, within B158DRAFT_1345 at 1390.764 kb on + strand, within B158DRAFT_1345 at 1391.210 kb on - strand at 1391.217 kb on + strand at 1391.222 kb on + strand at 1391.306 kb on + strand, within B158DRAFT_1346 at 1391.353 kb on + strand, within B158DRAFT_1346 at 1391.361 kb on - strand, within B158DRAFT_1346 at 1391.777 kb on + strand, within B158DRAFT_1346 at 1391.890 kb on + strand, within B158DRAFT_1346 at 1392.112 kb on + strand, within B158DRAFT_1346
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,387,545 + B158DRAFT_1344 0.47 -1.7 1,387,553 - B158DRAFT_1344 0.48 -1.7 1,387,553 - B158DRAFT_1344 0.48 +0.2 1,387,570 - B158DRAFT_1344 0.50 -1.9 1,387,572 + B158DRAFT_1344 0.50 -0.8 1,387,580 - B158DRAFT_1344 0.50 -0.1 1,387,588 - B158DRAFT_1344 0.51 -2.1 1,387,588 - B158DRAFT_1344 0.51 -2.2 1,387,593 + B158DRAFT_1344 0.52 -0.8 1,387,629 + B158DRAFT_1344 0.55 +0.9 1,387,629 + B158DRAFT_1344 0.55 -0.6 1,387,631 - B158DRAFT_1344 0.55 -0.9 1,387,632 - B158DRAFT_1344 0.55 -1.2 1,387,637 - B158DRAFT_1344 0.55 -1.4 1,387,637 - B158DRAFT_1344 0.55 -0.9 1,387,637 - B158DRAFT_1344 0.55 +0.4 1,387,672 + B158DRAFT_1344 0.59 +1.8 1,387,680 - B158DRAFT_1344 0.59 +1.0 1,387,680 - B158DRAFT_1344 0.59 -1.1 1,387,680 - B158DRAFT_1344 0.59 +0.5 1,387,680 - B158DRAFT_1344 0.59 +0.3 1,387,680 - B158DRAFT_1344 0.59 -1.6 1,387,680 - B158DRAFT_1344 0.59 +0.1 1,387,687 - B158DRAFT_1344 0.60 -0.1 1,387,719 + B158DRAFT_1344 0.63 -0.3 1,387,719 + B158DRAFT_1344 0.63 +0.3 1,387,727 - B158DRAFT_1344 0.63 -1.1 1,387,727 - B158DRAFT_1344 0.63 +3.2 1,387,729 + B158DRAFT_1344 0.64 -1.3 1,387,737 - B158DRAFT_1344 0.64 -0.2 1,387,737 - B158DRAFT_1344 0.64 +0.7 1,387,737 - B158DRAFT_1344 0.64 -0.9 1,387,737 - B158DRAFT_1344 0.64 -1.3 1,387,803 + B158DRAFT_1344 0.70 +0.5 1,387,810 - B158DRAFT_1344 0.71 -0.1 1,387,891 + B158DRAFT_1344 0.78 -2.2 1,388,058 - +0.4 1,388,422 + -0.8 1,389,025 - B158DRAFT_1345 0.19 +2.8 1,389,279 + B158DRAFT_1345 0.29 +2.4 1,389,454 - B158DRAFT_1345 0.35 +3.0 1,390,453 - B158DRAFT_1345 0.74 +4.4 1,390,568 + B158DRAFT_1345 0.79 +2.2 1,390,568 + B158DRAFT_1345 0.79 +0.8 1,390,576 - B158DRAFT_1345 0.79 +2.6 1,390,764 + B158DRAFT_1345 0.86 +1.4 1,390,764 + B158DRAFT_1345 0.86 +1.2 1,391,210 - +2.2 1,391,217 + +2.4 1,391,222 + +0.1 1,391,306 + B158DRAFT_1346 0.10 +2.4 1,391,353 + B158DRAFT_1346 0.14 +1.4 1,391,361 - B158DRAFT_1346 0.15 +2.0 1,391,777 + B158DRAFT_1346 0.49 +2.1 1,391,890 + B158DRAFT_1346 0.58 +0.6 1,392,112 + B158DRAFT_1346 0.76 +1.0
Or see this region's nucleotide sequence