Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1343 and B158DRAFT_1344 are separated by 19 nucleotides B158DRAFT_1344 and B158DRAFT_1345 are separated by 390 nucleotides
B158DRAFT_1343: B158DRAFT_1343 - methylisocitrate lyase, at 1,386,101 to 1,386,985
_1343
B158DRAFT_1344: B158DRAFT_1344 - 2-methylcitrate synthase (EC 2.3.3.5), at 1,387,005 to 1,388,144
_1344
B158DRAFT_1345: B158DRAFT_1345 - aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent, at 1,388,535 to 1,391,123
_1345
Position (kb)
1387
1388
1389 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1386.180 kb on - strand at 1386.289 kb on - strand, within B158DRAFT_1343 at 1386.320 kb on - strand, within B158DRAFT_1343 at 1386.327 kb on - strand, within B158DRAFT_1343 at 1386.364 kb on - strand, within B158DRAFT_1343 at 1386.364 kb on - strand, within B158DRAFT_1343 at 1386.592 kb on - strand, within B158DRAFT_1343 at 1386.604 kb on - strand, within B158DRAFT_1343 at 1386.671 kb on - strand, within B158DRAFT_1343 at 1386.748 kb on - strand, within B158DRAFT_1343 at 1386.748 kb on - strand, within B158DRAFT_1343 at 1386.998 kb on - strand at 1387.004 kb on - strand at 1387.043 kb on + strand at 1387.043 kb on + strand at 1387.043 kb on + strand at 1387.043 kb on + strand at 1387.043 kb on + strand at 1387.043 kb on + strand at 1387.051 kb on - strand at 1387.100 kb on - strand at 1387.272 kb on - strand, within B158DRAFT_1344 at 1387.307 kb on - strand, within B158DRAFT_1344 at 1387.335 kb on + strand, within B158DRAFT_1344 at 1387.376 kb on + strand, within B158DRAFT_1344 at 1387.476 kb on - strand, within B158DRAFT_1344 at 1387.530 kb on - strand, within B158DRAFT_1344 at 1387.545 kb on + strand, within B158DRAFT_1344 at 1387.553 kb on - strand, within B158DRAFT_1344 at 1387.553 kb on - strand, within B158DRAFT_1344 at 1387.570 kb on - strand, within B158DRAFT_1344 at 1387.572 kb on + strand, within B158DRAFT_1344 at 1387.580 kb on - strand, within B158DRAFT_1344 at 1387.588 kb on - strand, within B158DRAFT_1344 at 1387.588 kb on - strand, within B158DRAFT_1344 at 1387.593 kb on + strand, within B158DRAFT_1344 at 1387.629 kb on + strand, within B158DRAFT_1344 at 1387.629 kb on + strand, within B158DRAFT_1344 at 1387.631 kb on - strand, within B158DRAFT_1344 at 1387.632 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.637 kb on - strand, within B158DRAFT_1344 at 1387.672 kb on + strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.680 kb on - strand, within B158DRAFT_1344 at 1387.687 kb on - strand, within B158DRAFT_1344 at 1387.719 kb on + strand, within B158DRAFT_1344 at 1387.719 kb on + strand, within B158DRAFT_1344 at 1387.727 kb on - strand, within B158DRAFT_1344 at 1387.727 kb on - strand, within B158DRAFT_1344 at 1387.729 kb on + strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.737 kb on - strand, within B158DRAFT_1344 at 1387.803 kb on + strand, within B158DRAFT_1344 at 1387.810 kb on - strand, within B158DRAFT_1344 at 1387.891 kb on + strand, within B158DRAFT_1344 at 1388.058 kb on - strand at 1388.422 kb on + strand at 1389.025 kb on - strand, within B158DRAFT_1345
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,386,180 - +0.0 1,386,289 - B158DRAFT_1343 0.21 +0.9 1,386,320 - B158DRAFT_1343 0.25 +0.5 1,386,327 - B158DRAFT_1343 0.26 -0.2 1,386,364 - B158DRAFT_1343 0.30 -0.7 1,386,364 - B158DRAFT_1343 0.30 -0.7 1,386,592 - B158DRAFT_1343 0.55 -0.1 1,386,604 - B158DRAFT_1343 0.57 +0.8 1,386,671 - B158DRAFT_1343 0.64 -1.0 1,386,748 - B158DRAFT_1343 0.73 -0.5 1,386,748 - B158DRAFT_1343 0.73 -0.4 1,386,998 - +0.2 1,387,004 - +0.4 1,387,043 + -1.1 1,387,043 + -0.4 1,387,043 + +0.2 1,387,043 + +0.6 1,387,043 + -0.9 1,387,043 + +0.6 1,387,051 - -1.3 1,387,100 - +0.9 1,387,272 - B158DRAFT_1344 0.23 -1.3 1,387,307 - B158DRAFT_1344 0.26 +0.2 1,387,335 + B158DRAFT_1344 0.29 -0.7 1,387,376 + B158DRAFT_1344 0.33 +0.2 1,387,476 - B158DRAFT_1344 0.41 -1.7 1,387,530 - B158DRAFT_1344 0.46 +0.4 1,387,545 + B158DRAFT_1344 0.47 -1.7 1,387,553 - B158DRAFT_1344 0.48 -1.7 1,387,553 - B158DRAFT_1344 0.48 +0.2 1,387,570 - B158DRAFT_1344 0.50 -1.9 1,387,572 + B158DRAFT_1344 0.50 -0.8 1,387,580 - B158DRAFT_1344 0.50 -0.1 1,387,588 - B158DRAFT_1344 0.51 -2.1 1,387,588 - B158DRAFT_1344 0.51 -2.2 1,387,593 + B158DRAFT_1344 0.52 -0.8 1,387,629 + B158DRAFT_1344 0.55 +0.9 1,387,629 + B158DRAFT_1344 0.55 -0.6 1,387,631 - B158DRAFT_1344 0.55 -0.9 1,387,632 - B158DRAFT_1344 0.55 -1.2 1,387,637 - B158DRAFT_1344 0.55 -1.4 1,387,637 - B158DRAFT_1344 0.55 -0.9 1,387,637 - B158DRAFT_1344 0.55 +0.4 1,387,672 + B158DRAFT_1344 0.59 +1.8 1,387,680 - B158DRAFT_1344 0.59 +1.0 1,387,680 - B158DRAFT_1344 0.59 -1.1 1,387,680 - B158DRAFT_1344 0.59 +0.5 1,387,680 - B158DRAFT_1344 0.59 +0.3 1,387,680 - B158DRAFT_1344 0.59 -1.6 1,387,680 - B158DRAFT_1344 0.59 +0.1 1,387,687 - B158DRAFT_1344 0.60 -0.1 1,387,719 + B158DRAFT_1344 0.63 -0.3 1,387,719 + B158DRAFT_1344 0.63 +0.3 1,387,727 - B158DRAFT_1344 0.63 -1.1 1,387,727 - B158DRAFT_1344 0.63 +3.2 1,387,729 + B158DRAFT_1344 0.64 -1.3 1,387,737 - B158DRAFT_1344 0.64 -0.2 1,387,737 - B158DRAFT_1344 0.64 +0.7 1,387,737 - B158DRAFT_1344 0.64 -0.9 1,387,737 - B158DRAFT_1344 0.64 -1.3 1,387,803 + B158DRAFT_1344 0.70 +0.5 1,387,810 - B158DRAFT_1344 0.71 -0.1 1,387,891 + B158DRAFT_1344 0.78 -2.2 1,388,058 - +0.4 1,388,422 + -0.8 1,389,025 - B158DRAFT_1345 0.19 +2.8
Or see this region's nucleotide sequence