Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1167 and B158DRAFT_1168 are separated by 137 nucleotides B158DRAFT_1168 and B158DRAFT_1169 overlap by 4 nucleotides
B158DRAFT_1167: B158DRAFT_1167 - Leucyl aminopeptidase, at 1,206,672 to 1,208,162
_1167
B158DRAFT_1168: B158DRAFT_1168 - Predicted permeases, at 1,208,300 to 1,209,415
_1168
B158DRAFT_1169: B158DRAFT_1169 - Predicted permeases, at 1,209,412 to 1,210,476
_1169
Position (kb)
1208
1209
1210 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1207.322 kb on + strand, within B158DRAFT_1167 at 1207.330 kb on - strand, within B158DRAFT_1167 at 1207.409 kb on - strand, within B158DRAFT_1167 at 1207.409 kb on - strand, within B158DRAFT_1167 at 1207.409 kb on - strand, within B158DRAFT_1167 at 1207.433 kb on + strand, within B158DRAFT_1167 at 1207.441 kb on - strand, within B158DRAFT_1167 at 1207.441 kb on - strand, within B158DRAFT_1167 at 1207.476 kb on - strand, within B158DRAFT_1167 at 1207.494 kb on + strand, within B158DRAFT_1167 at 1207.499 kb on + strand, within B158DRAFT_1167 at 1207.507 kb on - strand, within B158DRAFT_1167 at 1207.516 kb on + strand, within B158DRAFT_1167 at 1207.534 kb on - strand, within B158DRAFT_1167 at 1207.554 kb on - strand, within B158DRAFT_1167 at 1207.566 kb on + strand, within B158DRAFT_1167 at 1207.615 kb on + strand, within B158DRAFT_1167 at 1207.615 kb on + strand, within B158DRAFT_1167 at 1207.739 kb on - strand, within B158DRAFT_1167 at 1207.744 kb on + strand, within B158DRAFT_1167 at 1207.748 kb on + strand, within B158DRAFT_1167 at 1207.756 kb on - strand, within B158DRAFT_1167 at 1207.756 kb on - strand, within B158DRAFT_1167 at 1207.841 kb on + strand, within B158DRAFT_1167 at 1207.841 kb on + strand, within B158DRAFT_1167 at 1207.849 kb on - strand, within B158DRAFT_1167 at 1207.920 kb on - strand, within B158DRAFT_1167 at 1207.954 kb on + strand, within B158DRAFT_1167 at 1208.030 kb on + strand at 1208.034 kb on + strand at 1208.034 kb on + strand at 1208.034 kb on + strand at 1208.034 kb on + strand at 1208.034 kb on + strand at 1208.034 kb on + strand at 1208.042 kb on - strand at 1208.042 kb on - strand at 1208.042 kb on - strand at 1208.042 kb on - strand at 1208.042 kb on - strand at 1208.042 kb on - strand at 1208.258 kb on + strand at 1208.258 kb on + strand at 1208.266 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,207,322 + B158DRAFT_1167 0.44 -0.7 1,207,330 - B158DRAFT_1167 0.44 +0.0 1,207,409 - B158DRAFT_1167 0.49 +1.3 1,207,409 - B158DRAFT_1167 0.49 -0.2 1,207,409 - B158DRAFT_1167 0.49 +0.5 1,207,433 + B158DRAFT_1167 0.51 +3.5 1,207,441 - B158DRAFT_1167 0.52 +1.1 1,207,441 - B158DRAFT_1167 0.52 -0.8 1,207,476 - B158DRAFT_1167 0.54 +0.7 1,207,494 + B158DRAFT_1167 0.55 +0.5 1,207,499 + B158DRAFT_1167 0.55 -0.6 1,207,507 - B158DRAFT_1167 0.56 +0.1 1,207,516 + B158DRAFT_1167 0.57 +0.3 1,207,534 - B158DRAFT_1167 0.58 -0.1 1,207,554 - B158DRAFT_1167 0.59 +0.5 1,207,566 + B158DRAFT_1167 0.60 -0.3 1,207,615 + B158DRAFT_1167 0.63 +0.9 1,207,615 + B158DRAFT_1167 0.63 -0.5 1,207,739 - B158DRAFT_1167 0.72 +1.0 1,207,744 + B158DRAFT_1167 0.72 -0.6 1,207,748 + B158DRAFT_1167 0.72 +0.4 1,207,756 - B158DRAFT_1167 0.73 +0.3 1,207,756 - B158DRAFT_1167 0.73 +0.2 1,207,841 + B158DRAFT_1167 0.78 -0.5 1,207,841 + B158DRAFT_1167 0.78 -0.2 1,207,849 - B158DRAFT_1167 0.79 +2.2 1,207,920 - B158DRAFT_1167 0.84 +0.7 1,207,954 + B158DRAFT_1167 0.86 -0.7 1,208,030 + +0.5 1,208,034 + +0.2 1,208,034 + -0.4 1,208,034 + +2.9 1,208,034 + +0.6 1,208,034 + +0.8 1,208,034 + +0.2 1,208,042 - +1.3 1,208,042 - -0.7 1,208,042 - +0.6 1,208,042 - -0.4 1,208,042 - -2.0 1,208,042 - -0.2 1,208,258 + +0.5 1,208,258 + +0.3 1,208,266 + -1.1
Or see this region's nucleotide sequence