Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1153

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1152 and B158DRAFT_1153 are separated by 110 nucleotidesB158DRAFT_1153 and B158DRAFT_1154 are separated by 55 nucleotidesB158DRAFT_1154 and B158DRAFT_1155 are separated by 25 nucleotides B158DRAFT_1152: B158DRAFT_1152 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3), at 1,187,825 to 1,188,964 _1152 B158DRAFT_1153: B158DRAFT_1153 - histidyl-tRNA synthetase (EC 6.1.1.21), at 1,189,075 to 1,190,346 _1153 B158DRAFT_1154: B158DRAFT_1154 - Uncharacterized protein conserved in bacteria, at 1,190,402 to 1,191,031 _1154 B158DRAFT_1155: B158DRAFT_1155 - Beta-barrel assembly machine subunit BamB, at 1,191,057 to 1,192,223 _1155 Position (kb) 1189 1190 1191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.354 kb on + strandat 1190.362 kb on - strandat 1190.362 kb on - strandat 1190.520 kb on + strand, within B158DRAFT_1154at 1190.543 kb on - strand, within B158DRAFT_1154at 1190.566 kb on - strand, within B158DRAFT_1154at 1190.618 kb on - strand, within B158DRAFT_1154at 1190.689 kb on - strand, within B158DRAFT_1154at 1190.856 kb on + strand, within B158DRAFT_1154

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,190,354 + -2.5
1,190,354 + +0.3
1,190,354 + -0.8
1,190,354 + -0.1
1,190,354 + -2.1
1,190,354 + -0.1
1,190,354 + -2.1
1,190,354 + -1.6
1,190,362 - -0.8
1,190,362 - +0.9
1,190,520 + B158DRAFT_1154 0.19 +1.6
1,190,543 - B158DRAFT_1154 0.22 +0.8
1,190,566 - B158DRAFT_1154 0.26 +1.3
1,190,618 - B158DRAFT_1154 0.34 +3.1
1,190,689 - B158DRAFT_1154 0.46 -1.8
1,190,856 + B158DRAFT_1154 0.72 +2.1

Or see this region's nucleotide sequence