Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1073 and B158DRAFT_1074 are separated by 164 nucleotides B158DRAFT_1074 and B158DRAFT_1075 are separated by 38 nucleotides B158DRAFT_1075 and B158DRAFT_1076 are separated by 9 nucleotides B158DRAFT_1076 and B158DRAFT_1077 are separated by 135 nucleotides
B158DRAFT_1073: B158DRAFT_1073 - methionine aminopeptidase, type I, at 1,113,541 to 1,114,377
_1073
B158DRAFT_1074: B158DRAFT_1074 - hypothetical protein, at 1,114,542 to 1,114,988
_1074
B158DRAFT_1075: B158DRAFT_1075 - hypothetical protein, at 1,115,027 to 1,115,227
_1075
B158DRAFT_1076: B158DRAFT_1076 - Protein of unknown function (DUF3617)., at 1,115,237 to 1,115,671
_1076
B158DRAFT_1077: B158DRAFT_1077 - Fatty-acid desaturase, at 1,115,807 to 1,116,718
_1077
Position (kb)
1115
1116 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1114.407 kb on - strand at 1114.465 kb on - strand at 1114.543 kb on + strand at 1114.591 kb on - strand, within B158DRAFT_1074 at 1114.593 kb on + strand, within B158DRAFT_1074 at 1114.625 kb on + strand, within B158DRAFT_1074 at 1114.679 kb on - strand, within B158DRAFT_1074 at 1114.681 kb on + strand, within B158DRAFT_1074 at 1114.681 kb on + strand, within B158DRAFT_1074 at 1114.681 kb on + strand, within B158DRAFT_1074 at 1114.681 kb on + strand, within B158DRAFT_1074 at 1114.681 kb on + strand, within B158DRAFT_1074 at 1114.689 kb on - strand, within B158DRAFT_1074 at 1114.689 kb on - strand, within B158DRAFT_1074 at 1114.689 kb on - strand, within B158DRAFT_1074 at 1114.689 kb on - strand, within B158DRAFT_1074 at 1114.689 kb on - strand, within B158DRAFT_1074 at 1114.766 kb on + strand, within B158DRAFT_1074 at 1114.802 kb on + strand, within B158DRAFT_1074 at 1114.802 kb on + strand, within B158DRAFT_1074 at 1114.805 kb on - strand, within B158DRAFT_1074 at 1114.912 kb on - strand, within B158DRAFT_1074 at 1114.926 kb on + strand, within B158DRAFT_1074 at 1114.929 kb on - strand, within B158DRAFT_1074 at 1114.929 kb on - strand, within B158DRAFT_1074 at 1114.929 kb on - strand, within B158DRAFT_1074 at 1114.931 kb on + strand, within B158DRAFT_1074 at 1114.934 kb on - strand, within B158DRAFT_1074 at 1114.939 kb on - strand, within B158DRAFT_1074 at 1114.939 kb on - strand, within B158DRAFT_1074 at 1114.939 kb on - strand, within B158DRAFT_1074 at 1114.999 kb on + strand at 1115.017 kb on - strand at 1115.025 kb on - strand at 1115.083 kb on - strand, within B158DRAFT_1075 at 1115.114 kb on + strand, within B158DRAFT_1075 at 1115.126 kb on + strand, within B158DRAFT_1075 at 1115.126 kb on + strand, within B158DRAFT_1075 at 1115.134 kb on - strand, within B158DRAFT_1075 at 1115.134 kb on - strand, within B158DRAFT_1075 at 1115.134 kb on - strand, within B158DRAFT_1075 at 1115.134 kb on - strand, within B158DRAFT_1075 at 1115.134 kb on - strand, within B158DRAFT_1075 at 1115.134 kb on - strand, within B158DRAFT_1075 at 1115.177 kb on + strand, within B158DRAFT_1075 at 1115.185 kb on - strand, within B158DRAFT_1075 at 1115.353 kb on - strand, within B158DRAFT_1076 at 1115.368 kb on + strand, within B158DRAFT_1076 at 1115.409 kb on + strand, within B158DRAFT_1076 at 1115.421 kb on + strand, within B158DRAFT_1076 at 1115.461 kb on + strand, within B158DRAFT_1076 at 1115.488 kb on + strand, within B158DRAFT_1076 at 1115.573 kb on - strand, within B158DRAFT_1076 at 1115.573 kb on - strand, within B158DRAFT_1076 at 1115.573 kb on - strand, within B158DRAFT_1076 at 1115.578 kb on - strand, within B158DRAFT_1076 at 1115.609 kb on - strand, within B158DRAFT_1076 at 1115.635 kb on + strand at 1115.635 kb on + strand at 1115.635 kb on + strand at 1115.635 kb on + strand at 1115.640 kb on + strand at 1115.640 kb on + strand at 1115.643 kb on - strand at 1115.643 kb on - strand at 1115.703 kb on + strand at 1115.730 kb on - strand at 1115.735 kb on - strand at 1115.751 kb on + strand at 1115.764 kb on + strand at 1115.764 kb on + strand at 1115.764 kb on + strand at 1115.772 kb on + strand at 1115.772 kb on - strand at 1115.772 kb on - strand at 1115.785 kb on + strand at 1115.845 kb on - strand at 1115.845 kb on - strand at 1115.870 kb on - strand at 1115.879 kb on - strand at 1115.880 kb on - strand at 1115.899 kb on - strand, within B158DRAFT_1077 at 1115.984 kb on - strand, within B158DRAFT_1077 at 1116.043 kb on + strand, within B158DRAFT_1077 at 1116.076 kb on + strand, within B158DRAFT_1077 at 1116.076 kb on + strand, within B158DRAFT_1077 at 1116.076 kb on + strand, within B158DRAFT_1077 at 1116.079 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.184 kb on + strand, within B158DRAFT_1077 at 1116.192 kb on - strand, within B158DRAFT_1077 at 1116.199 kb on - strand, within B158DRAFT_1077 at 1116.199 kb on - strand, within B158DRAFT_1077 at 1116.199 kb on - strand, within B158DRAFT_1077 at 1116.201 kb on + strand, within B158DRAFT_1077 at 1116.317 kb on + strand, within B158DRAFT_1077 at 1116.325 kb on - strand, within B158DRAFT_1077 at 1116.387 kb on - strand, within B158DRAFT_1077 at 1116.420 kb on + strand, within B158DRAFT_1077 at 1116.420 kb on + strand, within B158DRAFT_1077 at 1116.426 kb on + strand, within B158DRAFT_1077 at 1116.428 kb on - strand, within B158DRAFT_1077 at 1116.428 kb on - strand, within B158DRAFT_1077 at 1116.429 kb on - strand, within B158DRAFT_1077 at 1116.478 kb on - strand, within B158DRAFT_1077 at 1116.509 kb on + strand, within B158DRAFT_1077 at 1116.509 kb on + strand, within B158DRAFT_1077 at 1116.517 kb on - strand, within B158DRAFT_1077 at 1116.517 kb on - strand, within B158DRAFT_1077 at 1116.546 kb on - strand, within B158DRAFT_1077 at 1116.546 kb on - strand, within B158DRAFT_1077 at 1116.546 kb on - strand, within B158DRAFT_1077 at 1116.556 kb on - strand, within B158DRAFT_1077 at 1116.556 kb on - strand, within B158DRAFT_1077 at 1116.584 kb on + strand, within B158DRAFT_1077 at 1116.639 kb on + strand at 1116.639 kb on + strand at 1116.647 kb on - strand at 1116.660 kb on + strand at 1116.660 kb on + strand at 1116.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,114,407 - +0.6 1,114,465 - -0.2 1,114,543 + -0.2 1,114,591 - B158DRAFT_1074 0.11 +0.1 1,114,593 + B158DRAFT_1074 0.11 +0.3 1,114,625 + B158DRAFT_1074 0.19 +0.3 1,114,679 - B158DRAFT_1074 0.31 -1.3 1,114,681 + B158DRAFT_1074 0.31 -0.9 1,114,681 + B158DRAFT_1074 0.31 -1.4 1,114,681 + B158DRAFT_1074 0.31 -0.6 1,114,681 + B158DRAFT_1074 0.31 -1.1 1,114,681 + B158DRAFT_1074 0.31 +0.1 1,114,689 - B158DRAFT_1074 0.33 -1.4 1,114,689 - B158DRAFT_1074 0.33 -1.4 1,114,689 - B158DRAFT_1074 0.33 -1.6 1,114,689 - B158DRAFT_1074 0.33 +0.9 1,114,689 - B158DRAFT_1074 0.33 +0.4 1,114,766 + B158DRAFT_1074 0.50 -0.8 1,114,802 + B158DRAFT_1074 0.58 -0.1 1,114,802 + B158DRAFT_1074 0.58 -0.9 1,114,805 - B158DRAFT_1074 0.59 -1.4 1,114,912 - B158DRAFT_1074 0.83 -2.3 1,114,926 + B158DRAFT_1074 0.86 -0.3 1,114,929 - B158DRAFT_1074 0.87 -1.3 1,114,929 - B158DRAFT_1074 0.87 +0.0 1,114,929 - B158DRAFT_1074 0.87 -0.8 1,114,931 + B158DRAFT_1074 0.87 -1.6 1,114,934 - B158DRAFT_1074 0.88 -1.0 1,114,939 - B158DRAFT_1074 0.89 -0.4 1,114,939 - B158DRAFT_1074 0.89 -1.3 1,114,939 - B158DRAFT_1074 0.89 +0.3 1,114,999 + +1.4 1,115,017 - -0.6 1,115,025 - -0.7 1,115,083 - B158DRAFT_1075 0.28 -0.9 1,115,114 + B158DRAFT_1075 0.43 -1.4 1,115,126 + B158DRAFT_1075 0.49 -0.6 1,115,126 + B158DRAFT_1075 0.49 -1.7 1,115,134 - B158DRAFT_1075 0.53 -1.3 1,115,134 - B158DRAFT_1075 0.53 -0.8 1,115,134 - B158DRAFT_1075 0.53 +0.4 1,115,134 - B158DRAFT_1075 0.53 -0.5 1,115,134 - B158DRAFT_1075 0.53 -1.1 1,115,134 - B158DRAFT_1075 0.53 +1.3 1,115,177 + B158DRAFT_1075 0.75 -0.7 1,115,185 - B158DRAFT_1075 0.79 -1.0 1,115,353 - B158DRAFT_1076 0.27 -0.7 1,115,368 + B158DRAFT_1076 0.30 -1.5 1,115,409 + B158DRAFT_1076 0.40 -2.6 1,115,421 + B158DRAFT_1076 0.42 -0.7 1,115,461 + B158DRAFT_1076 0.51 +0.1 1,115,488 + B158DRAFT_1076 0.58 -0.9 1,115,573 - B158DRAFT_1076 0.77 -0.5 1,115,573 - B158DRAFT_1076 0.77 -0.3 1,115,573 - B158DRAFT_1076 0.77 +2.6 1,115,578 - B158DRAFT_1076 0.78 +1.1 1,115,609 - B158DRAFT_1076 0.86 -0.1 1,115,635 + +2.4 1,115,635 + -0.3 1,115,635 + +0.1 1,115,635 + -0.4 1,115,640 + -0.1 1,115,640 + -0.6 1,115,643 - -1.0 1,115,643 - +0.1 1,115,703 + -1.0 1,115,730 - -1.7 1,115,735 - -1.8 1,115,751 + -1.6 1,115,764 + -0.8 1,115,764 + +1.3 1,115,764 + -1.7 1,115,772 + +1.0 1,115,772 - -1.7 1,115,772 - -0.7 1,115,785 + -0.4 1,115,845 - -0.4 1,115,845 - +1.0 1,115,870 - -1.8 1,115,879 - -0.8 1,115,880 - -0.5 1,115,899 - B158DRAFT_1077 0.10 +0.2 1,115,984 - B158DRAFT_1077 0.19 -0.3 1,116,043 + B158DRAFT_1077 0.26 -0.5 1,116,076 + B158DRAFT_1077 0.29 -0.2 1,116,076 + B158DRAFT_1077 0.29 +1.4 1,116,076 + B158DRAFT_1077 0.29 +0.5 1,116,079 - B158DRAFT_1077 0.30 +2.0 1,116,084 - B158DRAFT_1077 0.30 +0.7 1,116,084 - B158DRAFT_1077 0.30 -1.3 1,116,084 - B158DRAFT_1077 0.30 +1.3 1,116,084 - B158DRAFT_1077 0.30 -1.0 1,116,084 - B158DRAFT_1077 0.30 +1.6 1,116,184 + B158DRAFT_1077 0.41 +0.4 1,116,192 - B158DRAFT_1077 0.42 +2.4 1,116,199 - B158DRAFT_1077 0.43 -0.3 1,116,199 - B158DRAFT_1077 0.43 -1.4 1,116,199 - B158DRAFT_1077 0.43 -0.7 1,116,201 + B158DRAFT_1077 0.43 -2.6 1,116,317 + B158DRAFT_1077 0.56 -1.1 1,116,325 - B158DRAFT_1077 0.57 +1.3 1,116,387 - B158DRAFT_1077 0.64 -0.6 1,116,420 + B158DRAFT_1077 0.67 +0.9 1,116,420 + B158DRAFT_1077 0.67 +1.6 1,116,426 + B158DRAFT_1077 0.68 -0.5 1,116,428 - B158DRAFT_1077 0.68 +0.4 1,116,428 - B158DRAFT_1077 0.68 -0.3 1,116,429 - B158DRAFT_1077 0.68 -0.7 1,116,478 - B158DRAFT_1077 0.74 -1.1 1,116,509 + B158DRAFT_1077 0.77 +1.1 1,116,509 + B158DRAFT_1077 0.77 -1.1 1,116,517 - B158DRAFT_1077 0.78 +0.3 1,116,517 - B158DRAFT_1077 0.78 +0.5 1,116,546 - B158DRAFT_1077 0.81 -0.2 1,116,546 - B158DRAFT_1077 0.81 -0.1 1,116,546 - B158DRAFT_1077 0.81 -0.8 1,116,556 - B158DRAFT_1077 0.82 -0.9 1,116,556 - B158DRAFT_1077 0.82 -0.6 1,116,584 + B158DRAFT_1077 0.85 +2.4 1,116,639 + -0.2 1,116,639 + +0.8 1,116,647 - -0.1 1,116,660 + -0.5 1,116,660 + -1.7 1,116,665 + +0.1
Or see this region's nucleotide sequence