Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0956

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0955 and B158DRAFT_0956 are separated by 385 nucleotidesB158DRAFT_0956 and B158DRAFT_0957 are separated by 24 nucleotidesB158DRAFT_0957 and B158DRAFT_0958 are separated by 11 nucleotides B158DRAFT_0955: B158DRAFT_0955 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 983,771 to 986,338 _0955 B158DRAFT_0956: B158DRAFT_0956 - dissimilatory nitrite reductase (NO-forming), copper type apoprotein, at 986,724 to 988,136 _0956 B158DRAFT_0957: B158DRAFT_0957 - Uncharacterized conserved protein, at 988,161 to 988,973 _0957 B158DRAFT_0958: B158DRAFT_0958 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 988,985 to 989,557 _0958 Position (kb) 986 987 988 989Strain fitness (log2 ratio) -2 -1 0 1 2 3at 985.756 kb on - strand, within B158DRAFT_0955at 985.811 kb on + strand, within B158DRAFT_0955at 985.811 kb on + strand, within B158DRAFT_0955at 985.827 kb on - strand, within B158DRAFT_0955at 985.836 kb on - strand, within B158DRAFT_0955at 985.855 kb on + strand, within B158DRAFT_0955at 985.900 kb on + strand, within B158DRAFT_0955at 985.908 kb on - strand, within B158DRAFT_0955at 986.020 kb on + strand, within B158DRAFT_0955at 986.025 kb on + strand, within B158DRAFT_0955at 986.032 kb on - strand, within B158DRAFT_0955at 986.079 kb on - strand, within B158DRAFT_0955at 986.109 kb on - strandat 986.138 kb on - strandat 986.197 kb on + strandat 986.203 kb on - strandat 986.205 kb on - strandat 986.217 kb on + strandat 986.252 kb on + strandat 986.252 kb on + strandat 986.260 kb on - strandat 986.281 kb on + strandat 986.281 kb on + strandat 986.478 kb on - strandat 986.657 kb on - strandat 986.726 kb on - strandat 986.769 kb on + strandat 986.777 kb on - strandat 986.783 kb on + strandat 986.844 kb on - strandat 986.872 kb on + strand, within B158DRAFT_0956at 986.899 kb on - strand, within B158DRAFT_0956at 986.917 kb on - strand, within B158DRAFT_0956at 986.939 kb on - strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.964 kb on + strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 986.972 kb on - strand, within B158DRAFT_0956at 987.070 kb on - strand, within B158DRAFT_0956at 987.072 kb on - strand, within B158DRAFT_0956at 987.138 kb on + strand, within B158DRAFT_0956at 987.146 kb on - strand, within B158DRAFT_0956at 987.167 kb on - strand, within B158DRAFT_0956at 987.186 kb on + strand, within B158DRAFT_0956at 987.186 kb on + strand, within B158DRAFT_0956at 987.268 kb on + strand, within B158DRAFT_0956at 987.317 kb on - strand, within B158DRAFT_0956at 987.379 kb on - strand, within B158DRAFT_0956at 987.398 kb on - strand, within B158DRAFT_0956at 987.423 kb on - strand, within B158DRAFT_0956at 987.448 kb on - strand, within B158DRAFT_0956at 987.553 kb on - strand, within B158DRAFT_0956at 987.752 kb on - strand, within B158DRAFT_0956at 987.851 kb on - strand, within B158DRAFT_0956at 987.867 kb on + strand, within B158DRAFT_0956at 987.867 kb on + strand, within B158DRAFT_0956at 987.872 kb on + strand, within B158DRAFT_0956at 987.875 kb on - strand, within B158DRAFT_0956at 987.895 kb on - strand, within B158DRAFT_0956at 987.899 kb on + strand, within B158DRAFT_0956at 987.907 kb on - strand, within B158DRAFT_0956at 987.959 kb on - strand, within B158DRAFT_0956at 987.959 kb on - strand, within B158DRAFT_0956at 988.000 kb on + strandat 988.008 kb on - strandat 988.016 kb on + strandat 988.024 kb on - strandat 988.261 kb on - strand, within B158DRAFT_0957at 988.267 kb on + strand, within B158DRAFT_0957at 988.324 kb on - strand, within B158DRAFT_0957at 988.324 kb on - strand, within B158DRAFT_0957at 988.324 kb on - strand, within B158DRAFT_0957at 988.353 kb on + strand, within B158DRAFT_0957at 988.460 kb on + strand, within B158DRAFT_0957at 988.460 kb on + strand, within B158DRAFT_0957at 988.468 kb on - strand, within B158DRAFT_0957at 988.553 kb on + strand, within B158DRAFT_0957at 988.553 kb on + strand, within B158DRAFT_0957at 988.560 kb on + strand, within B158DRAFT_0957at 988.560 kb on + strand, within B158DRAFT_0957at 988.561 kb on - strand, within B158DRAFT_0957at 988.561 kb on - strand, within B158DRAFT_0957at 988.568 kb on - strand, within B158DRAFT_0957at 988.568 kb on - strand, within B158DRAFT_0957at 988.587 kb on - strand, within B158DRAFT_0957at 988.664 kb on - strand, within B158DRAFT_0957at 988.723 kb on - strand, within B158DRAFT_0957at 988.789 kb on - strand, within B158DRAFT_0957at 988.789 kb on - strand, within B158DRAFT_0957at 988.870 kb on + strand, within B158DRAFT_0957at 988.955 kb on - strandat 988.955 kb on - strandat 989.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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985,756 - B158DRAFT_0955 0.77 -1.9
985,811 + B158DRAFT_0955 0.79 -1.7
985,811 + B158DRAFT_0955 0.79 +2.8
985,827 - B158DRAFT_0955 0.80 -0.6
985,836 - B158DRAFT_0955 0.80 -0.3
985,855 + B158DRAFT_0955 0.81 -1.6
985,900 + B158DRAFT_0955 0.83 -2.2
985,908 - B158DRAFT_0955 0.83 +0.5
986,020 + B158DRAFT_0955 0.88 -1.1
986,025 + B158DRAFT_0955 0.88 +0.4
986,032 - B158DRAFT_0955 0.88 -0.1
986,079 - B158DRAFT_0955 0.90 -0.6
986,109 - +1.2
986,138 - +1.2
986,197 + +0.1
986,203 - -1.1
986,205 - -0.3
986,217 + +1.9
986,252 + +1.4
986,252 + +0.5
986,260 - -1.5
986,281 + +2.2
986,281 + -0.3
986,478 - -1.3
986,657 - -2.2
986,726 - -1.2
986,769 + -1.2
986,777 - -1.4
986,783 + -0.3
986,844 - -0.4
986,872 + B158DRAFT_0956 0.10 -1.1
986,899 - B158DRAFT_0956 0.12 +1.2
986,917 - B158DRAFT_0956 0.14 -0.1
986,939 - B158DRAFT_0956 0.15 -0.5
986,964 + B158DRAFT_0956 0.17 -0.0
986,964 + B158DRAFT_0956 0.17 -0.1
986,964 + B158DRAFT_0956 0.17 +0.4
986,964 + B158DRAFT_0956 0.17 -1.0
986,964 + B158DRAFT_0956 0.17 +0.4
986,964 + B158DRAFT_0956 0.17 -2.7
986,964 + B158DRAFT_0956 0.17 -0.6
986,964 + B158DRAFT_0956 0.17 +0.8
986,964 + B158DRAFT_0956 0.17 -0.1
986,964 + B158DRAFT_0956 0.17 -1.1
986,964 + B158DRAFT_0956 0.17 +0.0
986,964 + B158DRAFT_0956 0.17 -2.2
986,972 - B158DRAFT_0956 0.18 -0.5
986,972 - B158DRAFT_0956 0.18 -0.3
986,972 - B158DRAFT_0956 0.18 -0.8
986,972 - B158DRAFT_0956 0.18 +0.4
986,972 - B158DRAFT_0956 0.18 -0.9
986,972 - B158DRAFT_0956 0.18 -0.9
986,972 - B158DRAFT_0956 0.18 +0.7
986,972 - B158DRAFT_0956 0.18 +1.8
986,972 - B158DRAFT_0956 0.18 -1.7
986,972 - B158DRAFT_0956 0.18 -1.9
987,070 - B158DRAFT_0956 0.24 +1.1
987,072 - B158DRAFT_0956 0.25 -0.9
987,138 + B158DRAFT_0956 0.29 +0.3
987,146 - B158DRAFT_0956 0.30 +0.6
987,167 - B158DRAFT_0956 0.31 -0.4
987,186 + B158DRAFT_0956 0.33 +0.4
987,186 + B158DRAFT_0956 0.33 -0.4
987,268 + B158DRAFT_0956 0.38 +0.8
987,317 - B158DRAFT_0956 0.42 -1.2
987,379 - B158DRAFT_0956 0.46 +1.9
987,398 - B158DRAFT_0956 0.48 -0.2
987,423 - B158DRAFT_0956 0.49 -1.0
987,448 - B158DRAFT_0956 0.51 -2.4
987,553 - B158DRAFT_0956 0.59 -0.3
987,752 - B158DRAFT_0956 0.73 -1.3
987,851 - B158DRAFT_0956 0.80 -1.2
987,867 + B158DRAFT_0956 0.81 -1.7
987,867 + B158DRAFT_0956 0.81 +1.4
987,872 + B158DRAFT_0956 0.81 -0.2
987,875 - B158DRAFT_0956 0.81 -0.6
987,895 - B158DRAFT_0956 0.83 -0.5
987,899 + B158DRAFT_0956 0.83 +0.2
987,907 - B158DRAFT_0956 0.84 -0.1
987,959 - B158DRAFT_0956 0.87 +0.2
987,959 - B158DRAFT_0956 0.87 -0.7
988,000 + -0.1
988,008 - +0.0
988,016 + -0.9
988,024 - +1.1
988,261 - B158DRAFT_0957 0.12 +1.5
988,267 + B158DRAFT_0957 0.13 -2.0
988,324 - B158DRAFT_0957 0.20 -0.5
988,324 - B158DRAFT_0957 0.20 -0.3
988,324 - B158DRAFT_0957 0.20 +0.0
988,353 + B158DRAFT_0957 0.24 -2.0
988,460 + B158DRAFT_0957 0.37 +0.3
988,460 + B158DRAFT_0957 0.37 +1.7
988,468 - B158DRAFT_0957 0.38 -0.3
988,553 + B158DRAFT_0957 0.48 -0.2
988,553 + B158DRAFT_0957 0.48 -0.8
988,560 + B158DRAFT_0957 0.49 -0.4
988,560 + B158DRAFT_0957 0.49 -0.7
988,561 - B158DRAFT_0957 0.49 -0.6
988,561 - B158DRAFT_0957 0.49 -2.0
988,568 - B158DRAFT_0957 0.50 +0.0
988,568 - B158DRAFT_0957 0.50 -0.6
988,587 - B158DRAFT_0957 0.52 -0.7
988,664 - B158DRAFT_0957 0.62 +1.9
988,723 - B158DRAFT_0957 0.69 -1.1
988,789 - B158DRAFT_0957 0.77 +2.6
988,789 - B158DRAFT_0957 0.77 -0.8
988,870 + B158DRAFT_0957 0.87 -2.1
988,955 - -1.2
988,955 - -0.6
989,017 + -0.3

Or see this region's nucleotide sequence