Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0801

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0800 and B158DRAFT_0801 are separated by 74 nucleotidesB158DRAFT_0801 and B158DRAFT_0802 are separated by 132 nucleotides B158DRAFT_0800: B158DRAFT_0800 - Major Facilitator Superfamily., at 805,895 to 807,262 _0800 B158DRAFT_0801: B158DRAFT_0801 - hypothetical protein, at 807,337 to 807,759 _0801 B158DRAFT_0802: B158DRAFT_0802 - Arabinose efflux permease, at 807,892 to 809,091 _0802 Position (kb) 807 808Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 806.355 kb on + strand, within B158DRAFT_0800at 806.355 kb on + strand, within B158DRAFT_0800at 806.363 kb on + strand, within B158DRAFT_0800at 806.374 kb on + strand, within B158DRAFT_0800at 806.382 kb on - strand, within B158DRAFT_0800at 806.387 kb on - strand, within B158DRAFT_0800at 806.439 kb on + strand, within B158DRAFT_0800at 806.439 kb on + strand, within B158DRAFT_0800at 806.444 kb on + strand, within B158DRAFT_0800at 806.447 kb on - strand, within B158DRAFT_0800at 806.447 kb on - strand, within B158DRAFT_0800at 806.558 kb on + strand, within B158DRAFT_0800at 806.626 kb on - strand, within B158DRAFT_0800at 806.665 kb on + strand, within B158DRAFT_0800at 806.673 kb on - strand, within B158DRAFT_0800at 806.731 kb on - strand, within B158DRAFT_0800at 806.778 kb on + strand, within B158DRAFT_0800at 806.786 kb on - strand, within B158DRAFT_0800at 806.786 kb on - strand, within B158DRAFT_0800at 806.814 kb on + strand, within B158DRAFT_0800at 806.814 kb on + strand, within B158DRAFT_0800at 806.815 kb on + strand, within B158DRAFT_0800at 806.840 kb on + strand, within B158DRAFT_0800at 806.840 kb on + strand, within B158DRAFT_0800at 806.840 kb on + strand, within B158DRAFT_0800at 806.848 kb on - strand, within B158DRAFT_0800at 806.868 kb on - strand, within B158DRAFT_0800at 806.903 kb on + strand, within B158DRAFT_0800at 806.911 kb on - strand, within B158DRAFT_0800at 806.949 kb on - strand, within B158DRAFT_0800at 806.988 kb on - strand, within B158DRAFT_0800at 806.998 kb on - strand, within B158DRAFT_0800at 807.033 kb on + strand, within B158DRAFT_0800at 807.033 kb on + strand, within B158DRAFT_0800at 807.041 kb on - strand, within B158DRAFT_0800at 807.041 kb on - strand, within B158DRAFT_0800at 807.041 kb on - strand, within B158DRAFT_0800at 807.082 kb on + strand, within B158DRAFT_0800at 807.082 kb on + strand, within B158DRAFT_0800at 807.090 kb on - strand, within B158DRAFT_0800at 807.093 kb on + strand, within B158DRAFT_0800at 807.100 kb on - strand, within B158DRAFT_0800at 807.100 kb on - strand, within B158DRAFT_0800at 807.114 kb on - strand, within B158DRAFT_0800at 807.114 kb on - strand, within B158DRAFT_0800at 807.200 kb on + strandat 807.208 kb on - strandat 807.233 kb on - strandat 807.233 kb on - strandat 807.237 kb on + strandat 807.238 kb on - strandat 807.265 kb on - strandat 807.461 kb on - strand, within B158DRAFT_0801at 807.477 kb on + strand, within B158DRAFT_0801at 807.477 kb on + strand, within B158DRAFT_0801at 807.477 kb on + strand, within B158DRAFT_0801at 807.477 kb on + strand, within B158DRAFT_0801at 807.477 kb on + strand, within B158DRAFT_0801at 807.485 kb on - strand, within B158DRAFT_0801at 807.485 kb on - strand, within B158DRAFT_0801at 807.485 kb on - strand, within B158DRAFT_0801at 807.492 kb on + strand, within B158DRAFT_0801at 807.492 kb on + strand, within B158DRAFT_0801at 807.492 kb on + strand, within B158DRAFT_0801at 807.492 kb on + strand, within B158DRAFT_0801at 807.500 kb on - strand, within B158DRAFT_0801at 807.500 kb on - strand, within B158DRAFT_0801at 807.500 kb on - strand, within B158DRAFT_0801at 807.500 kb on - strand, within B158DRAFT_0801at 807.500 kb on - strand, within B158DRAFT_0801at 807.500 kb on - strand, within B158DRAFT_0801at 807.502 kb on - strand, within B158DRAFT_0801at 807.535 kb on + strand, within B158DRAFT_0801at 807.535 kb on + strand, within B158DRAFT_0801at 807.535 kb on + strand, within B158DRAFT_0801at 807.535 kb on + strand, within B158DRAFT_0801at 807.543 kb on - strand, within B158DRAFT_0801at 807.543 kb on - strand, within B158DRAFT_0801at 807.543 kb on - strand, within B158DRAFT_0801at 807.543 kb on - strand, within B158DRAFT_0801at 807.616 kb on - strand, within B158DRAFT_0801at 807.618 kb on + strand, within B158DRAFT_0801at 807.626 kb on - strand, within B158DRAFT_0801at 807.688 kb on + strand, within B158DRAFT_0801at 807.688 kb on + strand, within B158DRAFT_0801at 807.688 kb on + strand, within B158DRAFT_0801at 807.746 kb on - strandat 807.820 kb on + strandat 807.828 kb on - strandat 807.867 kb on + strandat 807.883 kb on - strandat 808.047 kb on + strand, within B158DRAFT_0802at 808.050 kb on - strand, within B158DRAFT_0802at 808.055 kb on - strand, within B158DRAFT_0802at 808.055 kb on - strand, within B158DRAFT_0802at 808.081 kb on + strand, within B158DRAFT_0802at 808.089 kb on - strand, within B158DRAFT_0802at 808.156 kb on + strand, within B158DRAFT_0802at 808.156 kb on + strand, within B158DRAFT_0802at 808.174 kb on - strand, within B158DRAFT_0802at 808.268 kb on + strand, within B158DRAFT_0802at 808.268 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.310 kb on + strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.318 kb on - strand, within B158DRAFT_0802at 808.320 kb on + strand, within B158DRAFT_0802at 808.320 kb on + strand, within B158DRAFT_0802at 808.406 kb on + strand, within B158DRAFT_0802at 808.406 kb on + strand, within B158DRAFT_0802at 808.414 kb on + strand, within B158DRAFT_0802at 808.414 kb on - strand, within B158DRAFT_0802at 808.424 kb on - strand, within B158DRAFT_0802at 808.426 kb on + strand, within B158DRAFT_0802at 808.434 kb on - strand, within B158DRAFT_0802at 808.475 kb on + strand, within B158DRAFT_0802at 808.475 kb on + strand, within B158DRAFT_0802at 808.475 kb on + strand, within B158DRAFT_0802at 808.483 kb on + strand, within B158DRAFT_0802at 808.483 kb on - strand, within B158DRAFT_0802at 808.483 kb on - strand, within B158DRAFT_0802at 808.507 kb on - strand, within B158DRAFT_0802at 808.515 kb on + strand, within B158DRAFT_0802at 808.628 kb on + strand, within B158DRAFT_0802at 808.670 kb on + strand, within B158DRAFT_0802at 808.716 kb on + strand, within B158DRAFT_0802at 808.716 kb on + strand, within B158DRAFT_0802at 808.724 kb on - strand, within B158DRAFT_0802at 808.724 kb on - strand, within B158DRAFT_0802at 808.724 kb on - strand, within B158DRAFT_0802at 808.739 kb on + strand, within B158DRAFT_0802

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
806,355 + B158DRAFT_0800 0.34 +1.1
806,355 + B158DRAFT_0800 0.34 -0.3
806,363 + B158DRAFT_0800 0.34 +0.2
806,374 + B158DRAFT_0800 0.35 -0.6
806,382 - B158DRAFT_0800 0.36 -1.6
806,387 - B158DRAFT_0800 0.36 +1.1
806,439 + B158DRAFT_0800 0.40 -0.3
806,439 + B158DRAFT_0800 0.40 -1.7
806,444 + B158DRAFT_0800 0.40 -1.5
806,447 - B158DRAFT_0800 0.40 +0.8
806,447 - B158DRAFT_0800 0.40 -1.9
806,558 + B158DRAFT_0800 0.48 -1.6
806,626 - B158DRAFT_0800 0.53 +0.3
806,665 + B158DRAFT_0800 0.56 -1.6
806,673 - B158DRAFT_0800 0.57 -0.8
806,731 - B158DRAFT_0800 0.61 +0.3
806,778 + B158DRAFT_0800 0.65 +0.2
806,786 - B158DRAFT_0800 0.65 -2.2
806,786 - B158DRAFT_0800 0.65 -0.9
806,814 + B158DRAFT_0800 0.67 -1.2
806,814 + B158DRAFT_0800 0.67 +0.4
806,815 + B158DRAFT_0800 0.67 -0.4
806,840 + B158DRAFT_0800 0.69 -1.4
806,840 + B158DRAFT_0800 0.69 -0.2
806,840 + B158DRAFT_0800 0.69 -0.9
806,848 - B158DRAFT_0800 0.70 -1.1
806,868 - B158DRAFT_0800 0.71 +0.3
806,903 + B158DRAFT_0800 0.74 -1.1
806,911 - B158DRAFT_0800 0.74 -0.3
806,949 - B158DRAFT_0800 0.77 -0.2
806,988 - B158DRAFT_0800 0.80 -0.7
806,998 - B158DRAFT_0800 0.81 -2.2
807,033 + B158DRAFT_0800 0.83 -1.7
807,033 + B158DRAFT_0800 0.83 -1.2
807,041 - B158DRAFT_0800 0.84 -0.7
807,041 - B158DRAFT_0800 0.84 -2.3
807,041 - B158DRAFT_0800 0.84 -1.4
807,082 + B158DRAFT_0800 0.87 -0.2
807,082 + B158DRAFT_0800 0.87 -0.1
807,090 - B158DRAFT_0800 0.87 -2.3
807,093 + B158DRAFT_0800 0.88 +0.3
807,100 - B158DRAFT_0800 0.88 -0.2
807,100 - B158DRAFT_0800 0.88 -0.7
807,114 - B158DRAFT_0800 0.89 +0.1
807,114 - B158DRAFT_0800 0.89 -0.3
807,200 + -1.2
807,208 - -0.1
807,233 - -0.3
807,233 - -1.1
807,237 + -0.5
807,238 - -0.2
807,265 - -2.5
807,461 - B158DRAFT_0801 0.29 -1.0
807,477 + B158DRAFT_0801 0.33 -1.4
807,477 + B158DRAFT_0801 0.33 -0.8
807,477 + B158DRAFT_0801 0.33 +2.3
807,477 + B158DRAFT_0801 0.33 +0.1
807,477 + B158DRAFT_0801 0.33 -0.6
807,485 - B158DRAFT_0801 0.35 +0.9
807,485 - B158DRAFT_0801 0.35 -2.4
807,485 - B158DRAFT_0801 0.35 +2.5
807,492 + B158DRAFT_0801 0.37 -0.3
807,492 + B158DRAFT_0801 0.37 +2.0
807,492 + B158DRAFT_0801 0.37 -0.6
807,492 + B158DRAFT_0801 0.37 +1.1
807,500 - B158DRAFT_0801 0.39 -1.2
807,500 - B158DRAFT_0801 0.39 -1.1
807,500 - B158DRAFT_0801 0.39 -1.8
807,500 - B158DRAFT_0801 0.39 -3.2
807,500 - B158DRAFT_0801 0.39 -1.1
807,500 - B158DRAFT_0801 0.39 +0.5
807,502 - B158DRAFT_0801 0.39 -0.2
807,535 + B158DRAFT_0801 0.47 -0.4
807,535 + B158DRAFT_0801 0.47 -0.7
807,535 + B158DRAFT_0801 0.47 -1.2
807,535 + B158DRAFT_0801 0.47 -1.0
807,543 - B158DRAFT_0801 0.49 -0.4
807,543 - B158DRAFT_0801 0.49 -0.4
807,543 - B158DRAFT_0801 0.49 +0.9
807,543 - B158DRAFT_0801 0.49 +0.2
807,616 - B158DRAFT_0801 0.66 -0.9
807,618 + B158DRAFT_0801 0.66 -1.9
807,626 - B158DRAFT_0801 0.68 -0.2
807,688 + B158DRAFT_0801 0.83 -1.1
807,688 + B158DRAFT_0801 0.83 -0.3
807,688 + B158DRAFT_0801 0.83 +2.6
807,746 - -0.1
807,820 + -1.8
807,828 - -0.9
807,867 + +0.6
807,883 - +0.4
808,047 + B158DRAFT_0802 0.13 +0.0
808,050 - B158DRAFT_0802 0.13 -0.8
808,055 - B158DRAFT_0802 0.14 +0.7
808,055 - B158DRAFT_0802 0.14 +0.2
808,081 + B158DRAFT_0802 0.16 -2.3
808,089 - B158DRAFT_0802 0.16 -1.9
808,156 + B158DRAFT_0802 0.22 -0.8
808,156 + B158DRAFT_0802 0.22 -1.5
808,174 - B158DRAFT_0802 0.23 -2.0
808,268 + B158DRAFT_0802 0.31 -0.7
808,268 + B158DRAFT_0802 0.31 +2.4
808,310 + B158DRAFT_0802 0.35 +1.4
808,310 + B158DRAFT_0802 0.35 +0.0
808,310 + B158DRAFT_0802 0.35 -0.6
808,310 + B158DRAFT_0802 0.35 -1.9
808,310 + B158DRAFT_0802 0.35 -0.9
808,310 + B158DRAFT_0802 0.35 -1.7
808,310 + B158DRAFT_0802 0.35 +0.8
808,310 + B158DRAFT_0802 0.35 -0.5
808,310 + B158DRAFT_0802 0.35 -0.5
808,310 + B158DRAFT_0802 0.35 -0.3
808,318 - B158DRAFT_0802 0.35 -0.6
808,318 - B158DRAFT_0802 0.35 +0.7
808,318 - B158DRAFT_0802 0.35 +1.3
808,318 - B158DRAFT_0802 0.35 -1.9
808,318 - B158DRAFT_0802 0.35 -0.5
808,318 - B158DRAFT_0802 0.35 -0.7
808,318 - B158DRAFT_0802 0.35 +0.1
808,318 - B158DRAFT_0802 0.35 -1.8
808,318 - B158DRAFT_0802 0.35 -0.4
808,318 - B158DRAFT_0802 0.35 +0.6
808,318 - B158DRAFT_0802 0.35 -1.1
808,320 + B158DRAFT_0802 0.36 -1.9
808,320 + B158DRAFT_0802 0.36 +0.2
808,406 + B158DRAFT_0802 0.43 +4.6
808,406 + B158DRAFT_0802 0.43 -1.2
808,414 + B158DRAFT_0802 0.43 +0.7
808,414 - B158DRAFT_0802 0.43 +0.3
808,424 - B158DRAFT_0802 0.44 -0.8
808,426 + B158DRAFT_0802 0.45 -1.2
808,434 - B158DRAFT_0802 0.45 -1.4
808,475 + B158DRAFT_0802 0.49 +0.1
808,475 + B158DRAFT_0802 0.49 -0.6
808,475 + B158DRAFT_0802 0.49 -0.3
808,483 + B158DRAFT_0802 0.49 -0.0
808,483 - B158DRAFT_0802 0.49 -0.8
808,483 - B158DRAFT_0802 0.49 -0.9
808,507 - B158DRAFT_0802 0.51 -0.3
808,515 + B158DRAFT_0802 0.52 +0.0
808,628 + B158DRAFT_0802 0.61 -0.3
808,670 + B158DRAFT_0802 0.65 -1.4
808,716 + B158DRAFT_0802 0.69 +0.1
808,716 + B158DRAFT_0802 0.69 -1.2
808,724 - B158DRAFT_0802 0.69 -0.8
808,724 - B158DRAFT_0802 0.69 -0.3
808,724 - B158DRAFT_0802 0.69 -0.1
808,739 + B158DRAFT_0802 0.71 +0.0

Or see this region's nucleotide sequence