Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0793 and B158DRAFT_0794 are separated by 2 nucleotides B158DRAFT_0794 and B158DRAFT_0795 are separated by 29 nucleotides B158DRAFT_0795 and B158DRAFT_0796 are separated by 36 nucleotides B158DRAFT_0796 and B158DRAFT_0797 are separated by 72 nucleotides
B158DRAFT_0793: B158DRAFT_0793 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 798,181 to 798,885
_0793
B158DRAFT_0794: B158DRAFT_0794 - DnaJ-domain-containing proteins 1, at 798,888 to 799,700
_0794
B158DRAFT_0795: B158DRAFT_0795 - Uncharacterized protein conserved in bacteria, at 799,730 to 800,371
_0795
B158DRAFT_0796: B158DRAFT_0796 - NAD-dependent protein deacetylases, SIR2 family, at 800,408 to 801,142
_0796
B158DRAFT_0797: B158DRAFT_0797 - Predicted endonuclease containing a URI domain, at 801,215 to 801,505
_0797
Position (kb) 799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 798.914 kb on - strand at 798.914 kb on - strand at 798.914 kb on - strand at 798.917 kb on + strand at 798.954 kb on + strand at 798.962 kb on - strand at 798.964 kb on + strand at 798.964 kb on + strand at 798.974 kb on - strand, within B158DRAFT_0794 at 798.974 kb on - strand, within B158DRAFT_0794 at 799.011 kb on - strand, within B158DRAFT_0794 at 799.011 kb on - strand, within B158DRAFT_0794 at 799.062 kb on + strand, within B158DRAFT_0794 at 799.292 kb on - strand, within B158DRAFT_0794 at 799.328 kb on + strand, within B158DRAFT_0794 at 799.328 kb on + strand, within B158DRAFT_0794 at 799.336 kb on - strand, within B158DRAFT_0794 at 799.402 kb on - strand, within B158DRAFT_0794 at 799.430 kb on + strand, within B158DRAFT_0794 at 799.432 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.497 kb on + strand, within B158DRAFT_0794 at 799.497 kb on + strand, within B158DRAFT_0794 at 799.500 kb on - strand, within B158DRAFT_0794 at 799.500 kb on - strand, within B158DRAFT_0794 at 799.588 kb on - strand, within B158DRAFT_0794 at 800.426 kb on + strand at 800.434 kb on - strand at 800.446 kb on + strand at 800.539 kb on - strand, within B158DRAFT_0796 at 800.552 kb on + strand, within B158DRAFT_0796 at 800.558 kb on - strand, within B158DRAFT_0796 at 800.568 kb on + strand, within B158DRAFT_0796 at 800.576 kb on - strand, within B158DRAFT_0796 at 800.576 kb on - strand, within B158DRAFT_0796 at 800.647 kb on + strand, within B158DRAFT_0796 at 800.647 kb on + strand, within B158DRAFT_0796 at 800.655 kb on - strand, within B158DRAFT_0796 at 800.791 kb on + strand, within B158DRAFT_0796 at 800.875 kb on + strand, within B158DRAFT_0796 at 800.875 kb on - strand, within B158DRAFT_0796 at 800.877 kb on + strand, within B158DRAFT_0796 at 800.877 kb on + strand, within B158DRAFT_0796 at 800.882 kb on + strand, within B158DRAFT_0796 at 800.882 kb on + strand, within B158DRAFT_0796 at 800.882 kb on + strand, within B158DRAFT_0796 at 800.882 kb on + strand, within B158DRAFT_0796 at 800.888 kb on + strand, within B158DRAFT_0796 at 800.888 kb on - strand, within B158DRAFT_0796 at 800.890 kb on - strand, within B158DRAFT_0796 at 800.890 kb on - strand, within B158DRAFT_0796 at 800.940 kb on - strand, within B158DRAFT_0796 at 800.940 kb on - strand, within B158DRAFT_0796 at 800.940 kb on - strand, within B158DRAFT_0796 at 800.940 kb on - strand, within B158DRAFT_0796 at 800.945 kb on + strand, within B158DRAFT_0796 at 800.982 kb on - strand, within B158DRAFT_0796 at 801.001 kb on + strand, within B158DRAFT_0796 at 801.001 kb on + strand, within B158DRAFT_0796 at 801.009 kb on - strand, within B158DRAFT_0796 at 801.009 kb on - strand, within B158DRAFT_0796 at 801.009 kb on - strand, within B158DRAFT_0796 at 801.020 kb on - strand, within B158DRAFT_0796 at 801.025 kb on - strand, within B158DRAFT_0796 at 801.066 kb on + strand, within B158DRAFT_0796 at 801.076 kb on + strand at 801.177 kb on + strand at 801.177 kb on + strand at 801.177 kb on + strand at 801.177 kb on + strand at 801.177 kb on + strand at 801.177 kb on + strand at 801.185 kb on - strand at 801.215 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 798,914 - -1.4 798,914 - +0.8 798,914 - -1.3 798,917 + -2.2 798,954 + -1.4 798,962 - -1.8 798,964 + -0.3 798,964 + -0.8 798,974 - B158DRAFT_0794 0.11 -0.9 798,974 - B158DRAFT_0794 0.11 -0.2 799,011 - B158DRAFT_0794 0.15 -1.4 799,011 - B158DRAFT_0794 0.15 +0.7 799,062 + B158DRAFT_0794 0.21 -2.6 799,292 - B158DRAFT_0794 0.50 +0.5 799,328 + B158DRAFT_0794 0.54 -1.1 799,328 + B158DRAFT_0794 0.54 -0.7 799,336 - B158DRAFT_0794 0.55 +1.0 799,402 - B158DRAFT_0794 0.63 -1.7 799,430 + B158DRAFT_0794 0.67 -0.2 799,432 + B158DRAFT_0794 0.67 -2.7 799,492 + B158DRAFT_0794 0.74 -1.1 799,492 + B158DRAFT_0794 0.74 -0.2 799,492 + B158DRAFT_0794 0.74 +0.8 799,492 + B158DRAFT_0794 0.74 -1.2 799,497 + B158DRAFT_0794 0.75 -0.0 799,497 + B158DRAFT_0794 0.75 +1.3 799,500 - B158DRAFT_0794 0.75 -1.5 799,500 - B158DRAFT_0794 0.75 -1.0 799,588 - B158DRAFT_0794 0.86 -0.9 800,426 + -0.2 800,434 - -1.1 800,446 + -1.3 800,539 - B158DRAFT_0796 0.18 -0.6 800,552 + B158DRAFT_0796 0.20 -0.5 800,558 - B158DRAFT_0796 0.20 +0.5 800,568 + B158DRAFT_0796 0.22 -1.3 800,576 - B158DRAFT_0796 0.23 -2.5 800,576 - B158DRAFT_0796 0.23 +0.8 800,647 + B158DRAFT_0796 0.33 -1.8 800,647 + B158DRAFT_0796 0.33 -1.8 800,655 - B158DRAFT_0796 0.34 +0.2 800,791 + B158DRAFT_0796 0.52 -1.3 800,875 + B158DRAFT_0796 0.64 +0.2 800,875 - B158DRAFT_0796 0.64 +0.5 800,877 + B158DRAFT_0796 0.64 +0.1 800,877 + B158DRAFT_0796 0.64 +0.6 800,882 + B158DRAFT_0796 0.64 -0.2 800,882 + B158DRAFT_0796 0.64 -0.5 800,882 + B158DRAFT_0796 0.64 -0.2 800,882 + B158DRAFT_0796 0.64 +0.3 800,888 + B158DRAFT_0796 0.65 -0.9 800,888 - B158DRAFT_0796 0.65 -0.6 800,890 - B158DRAFT_0796 0.66 -1.3 800,890 - B158DRAFT_0796 0.66 -0.7 800,940 - B158DRAFT_0796 0.72 +0.6 800,940 - B158DRAFT_0796 0.72 +0.4 800,940 - B158DRAFT_0796 0.72 -0.7 800,940 - B158DRAFT_0796 0.72 -1.0 800,945 + B158DRAFT_0796 0.73 +1.6 800,982 - B158DRAFT_0796 0.78 -2.0 801,001 + B158DRAFT_0796 0.81 -0.6 801,001 + B158DRAFT_0796 0.81 -0.6 801,009 - B158DRAFT_0796 0.82 +1.0 801,009 - B158DRAFT_0796 0.82 -0.1 801,009 - B158DRAFT_0796 0.82 -0.8 801,020 - B158DRAFT_0796 0.83 +0.3 801,025 - B158DRAFT_0796 0.84 -1.6 801,066 + B158DRAFT_0796 0.90 -1.6 801,076 + -2.9 801,177 + -0.2 801,177 + -0.6 801,177 + +0.1 801,177 + -0.8 801,177 + +0.3 801,177 + +0.6 801,185 - +0.5 801,215 - +0.3
Or see this region's nucleotide sequence