Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0792 and B158DRAFT_0793 overlap by 4 nucleotides B158DRAFT_0793 and B158DRAFT_0794 are separated by 2 nucleotides B158DRAFT_0794 and B158DRAFT_0795 are separated by 29 nucleotides B158DRAFT_0795 and B158DRAFT_0796 are separated by 36 nucleotides
B158DRAFT_0792: B158DRAFT_0792 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 797,150 to 798,184
_0792
B158DRAFT_0793: B158DRAFT_0793 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 798,181 to 798,885
_0793
B158DRAFT_0794: B158DRAFT_0794 - DnaJ-domain-containing proteins 1, at 798,888 to 799,700
_0794
B158DRAFT_0795: B158DRAFT_0795 - Uncharacterized protein conserved in bacteria, at 799,730 to 800,371
_0795
B158DRAFT_0796: B158DRAFT_0796 - NAD-dependent protein deacetylases, SIR2 family, at 800,408 to 801,142
_0796
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2 at 797.897 kb on - strand, within B158DRAFT_0792 at 797.985 kb on - strand, within B158DRAFT_0792 at 798.047 kb on + strand, within B158DRAFT_0792 at 798.056 kb on - strand, within B158DRAFT_0792 at 798.085 kb on - strand at 798.105 kb on - strand at 798.126 kb on + strand at 798.126 kb on + strand at 798.126 kb on + strand at 798.134 kb on - strand at 798.134 kb on - strand at 798.134 kb on - strand at 798.134 kb on - strand at 798.251 kb on - strand at 798.251 kb on - strand at 798.251 kb on - strand at 798.338 kb on + strand, within B158DRAFT_0793 at 798.472 kb on + strand, within B158DRAFT_0793 at 798.506 kb on + strand, within B158DRAFT_0793 at 798.511 kb on + strand, within B158DRAFT_0793 at 798.517 kb on + strand, within B158DRAFT_0793 at 798.549 kb on - strand, within B158DRAFT_0793 at 798.624 kb on + strand, within B158DRAFT_0793 at 798.624 kb on + strand, within B158DRAFT_0793 at 798.624 kb on + strand, within B158DRAFT_0793 at 798.624 kb on + strand, within B158DRAFT_0793 at 798.632 kb on - strand, within B158DRAFT_0793 at 798.632 kb on - strand, within B158DRAFT_0793 at 798.632 kb on - strand, within B158DRAFT_0793 at 798.641 kb on + strand, within B158DRAFT_0793 at 798.686 kb on + strand, within B158DRAFT_0793 at 798.714 kb on - strand, within B158DRAFT_0793 at 798.914 kb on - strand at 798.914 kb on - strand at 798.914 kb on - strand at 798.917 kb on + strand at 798.954 kb on + strand at 798.962 kb on - strand at 798.964 kb on + strand at 798.964 kb on + strand at 798.974 kb on - strand, within B158DRAFT_0794 at 798.974 kb on - strand, within B158DRAFT_0794 at 799.011 kb on - strand, within B158DRAFT_0794 at 799.011 kb on - strand, within B158DRAFT_0794 at 799.062 kb on + strand, within B158DRAFT_0794 at 799.292 kb on - strand, within B158DRAFT_0794 at 799.328 kb on + strand, within B158DRAFT_0794 at 799.328 kb on + strand, within B158DRAFT_0794 at 799.336 kb on - strand, within B158DRAFT_0794 at 799.402 kb on - strand, within B158DRAFT_0794 at 799.430 kb on + strand, within B158DRAFT_0794 at 799.432 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.492 kb on + strand, within B158DRAFT_0794 at 799.497 kb on + strand, within B158DRAFT_0794 at 799.497 kb on + strand, within B158DRAFT_0794 at 799.500 kb on - strand, within B158DRAFT_0794 at 799.500 kb on - strand, within B158DRAFT_0794 at 799.588 kb on - strand, within B158DRAFT_0794 at 800.426 kb on + strand at 800.434 kb on - strand at 800.446 kb on + strand at 800.539 kb on - strand, within B158DRAFT_0796 at 800.552 kb on + strand, within B158DRAFT_0796 at 800.558 kb on - strand, within B158DRAFT_0796 at 800.568 kb on + strand, within B158DRAFT_0796 at 800.576 kb on - strand, within B158DRAFT_0796 at 800.576 kb on - strand, within B158DRAFT_0796 at 800.647 kb on + strand, within B158DRAFT_0796 at 800.647 kb on + strand, within B158DRAFT_0796 at 800.655 kb on - strand, within B158DRAFT_0796
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 797,897 - B158DRAFT_0792 0.72 -0.8 797,985 - B158DRAFT_0792 0.81 +0.2 798,047 + B158DRAFT_0792 0.87 +2.3 798,056 - B158DRAFT_0792 0.88 +2.0 798,085 - +0.5 798,105 - -0.9 798,126 + -0.8 798,126 + +1.0 798,126 + -0.9 798,134 - -0.5 798,134 - -0.2 798,134 - -0.9 798,134 - +0.5 798,251 - -2.5 798,251 - +1.1 798,251 - +1.1 798,338 + B158DRAFT_0793 0.22 +1.4 798,472 + B158DRAFT_0793 0.41 +2.3 798,506 + B158DRAFT_0793 0.46 +1.3 798,511 + B158DRAFT_0793 0.47 +0.3 798,517 + B158DRAFT_0793 0.48 +0.7 798,549 - B158DRAFT_0793 0.52 +1.1 798,624 + B158DRAFT_0793 0.63 +1.1 798,624 + B158DRAFT_0793 0.63 +1.3 798,624 + B158DRAFT_0793 0.63 -0.9 798,624 + B158DRAFT_0793 0.63 -0.9 798,632 - B158DRAFT_0793 0.64 +0.6 798,632 - B158DRAFT_0793 0.64 -0.3 798,632 - B158DRAFT_0793 0.64 +0.3 798,641 + B158DRAFT_0793 0.65 -1.1 798,686 + B158DRAFT_0793 0.72 +0.1 798,714 - B158DRAFT_0793 0.76 +0.1 798,914 - -1.4 798,914 - +0.8 798,914 - -1.3 798,917 + -2.2 798,954 + -1.4 798,962 - -1.8 798,964 + -0.3 798,964 + -0.8 798,974 - B158DRAFT_0794 0.11 -0.9 798,974 - B158DRAFT_0794 0.11 -0.2 799,011 - B158DRAFT_0794 0.15 -1.4 799,011 - B158DRAFT_0794 0.15 +0.7 799,062 + B158DRAFT_0794 0.21 -2.6 799,292 - B158DRAFT_0794 0.50 +0.5 799,328 + B158DRAFT_0794 0.54 -1.1 799,328 + B158DRAFT_0794 0.54 -0.7 799,336 - B158DRAFT_0794 0.55 +1.0 799,402 - B158DRAFT_0794 0.63 -1.7 799,430 + B158DRAFT_0794 0.67 -0.2 799,432 + B158DRAFT_0794 0.67 -2.7 799,492 + B158DRAFT_0794 0.74 -1.1 799,492 + B158DRAFT_0794 0.74 -0.2 799,492 + B158DRAFT_0794 0.74 +0.8 799,492 + B158DRAFT_0794 0.74 -1.2 799,497 + B158DRAFT_0794 0.75 -0.0 799,497 + B158DRAFT_0794 0.75 +1.3 799,500 - B158DRAFT_0794 0.75 -1.5 799,500 - B158DRAFT_0794 0.75 -1.0 799,588 - B158DRAFT_0794 0.86 -0.9 800,426 + -0.2 800,434 - -1.1 800,446 + -1.3 800,539 - B158DRAFT_0796 0.18 -0.6 800,552 + B158DRAFT_0796 0.20 -0.5 800,558 - B158DRAFT_0796 0.20 +0.5 800,568 + B158DRAFT_0796 0.22 -1.3 800,576 - B158DRAFT_0796 0.23 -2.5 800,576 - B158DRAFT_0796 0.23 +0.8 800,647 + B158DRAFT_0796 0.33 -1.8 800,647 + B158DRAFT_0796 0.33 -1.8 800,655 - B158DRAFT_0796 0.34 +0.2
Or see this region's nucleotide sequence