Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0697 and B158DRAFT_0698 overlap by 4 nucleotides B158DRAFT_0698 and B158DRAFT_0699 overlap by 4 nucleotides B158DRAFT_0699 and B158DRAFT_0700 overlap by 22 nucleotides
B158DRAFT_0697: B158DRAFT_0697 - Type II secretory pathway, component PulL, at 698,417 to 699,652
_0697
B158DRAFT_0698: B158DRAFT_0698 - Type II secretory pathway, component PulM, at 699,649 to 700,131
_0698
B158DRAFT_0699: B158DRAFT_0699 - type II secretion system protein N (GspN), at 700,128 to 700,874
_0699
B158DRAFT_0700: B158DRAFT_0700 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 700,853 to 701,527
_0700
Position (kb) 699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 698.675 kb on - strand, within B158DRAFT_0697 at 698.707 kb on + strand, within B158DRAFT_0697 at 698.827 kb on + strand, within B158DRAFT_0697 at 698.878 kb on - strand, within B158DRAFT_0697 at 699.136 kb on - strand, within B158DRAFT_0697 at 699.351 kb on + strand, within B158DRAFT_0697 at 699.559 kb on + strand at 699.647 kb on - strand at 699.854 kb on + strand, within B158DRAFT_0698 at 699.890 kb on + strand, within B158DRAFT_0698 at 700.039 kb on + strand, within B158DRAFT_0698 at 700.048 kb on - strand, within B158DRAFT_0698 at 700.069 kb on - strand, within B158DRAFT_0698 at 700.217 kb on - strand, within B158DRAFT_0699 at 700.224 kb on + strand, within B158DRAFT_0699 at 700.224 kb on + strand, within B158DRAFT_0699 at 700.239 kb on - strand, within B158DRAFT_0699 at 700.246 kb on + strand, within B158DRAFT_0699 at 700.327 kb on - strand, within B158DRAFT_0699 at 700.479 kb on + strand, within B158DRAFT_0699 at 700.484 kb on + strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.489 kb on + strand, within B158DRAFT_0699 at 700.596 kb on - strand, within B158DRAFT_0699 at 700.600 kb on + strand, within B158DRAFT_0699 at 700.600 kb on + strand, within B158DRAFT_0699 at 700.613 kb on - strand, within B158DRAFT_0699 at 700.649 kb on + strand, within B158DRAFT_0699 at 700.737 kb on - strand, within B158DRAFT_0699 at 700.804 kb on - strand at 700.815 kb on + strand at 700.823 kb on - strand at 700.835 kb on + strand at 700.894 kb on + strand at 700.967 kb on - strand, within B158DRAFT_0700 at 701.013 kb on - strand, within B158DRAFT_0700
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 698,675 - B158DRAFT_0697 0.21 +3.0 698,707 + B158DRAFT_0697 0.23 +1.8 698,827 + B158DRAFT_0697 0.33 +2.6 698,878 - B158DRAFT_0697 0.37 +1.1 699,136 - B158DRAFT_0697 0.58 +3.0 699,351 + B158DRAFT_0697 0.76 +2.0 699,559 + +0.7 699,647 - +1.6 699,854 + B158DRAFT_0698 0.42 +3.0 699,890 + B158DRAFT_0698 0.50 +0.2 700,039 + B158DRAFT_0698 0.81 +1.3 700,048 - B158DRAFT_0698 0.83 +1.3 700,069 - B158DRAFT_0698 0.87 +2.0 700,217 - B158DRAFT_0699 0.12 -1.0 700,224 + B158DRAFT_0699 0.13 -0.3 700,224 + B158DRAFT_0699 0.13 -1.3 700,239 - B158DRAFT_0699 0.15 -1.2 700,246 + B158DRAFT_0699 0.16 -1.1 700,327 - B158DRAFT_0699 0.27 -0.7 700,479 + B158DRAFT_0699 0.47 -0.2 700,484 + B158DRAFT_0699 0.48 -0.8 700,487 - B158DRAFT_0699 0.48 -0.1 700,487 - B158DRAFT_0699 0.48 -0.2 700,487 - B158DRAFT_0699 0.48 -1.2 700,487 - B158DRAFT_0699 0.48 -0.3 700,489 + B158DRAFT_0699 0.48 -1.8 700,596 - B158DRAFT_0699 0.63 -0.8 700,600 + B158DRAFT_0699 0.63 -0.8 700,600 + B158DRAFT_0699 0.63 -1.1 700,613 - B158DRAFT_0699 0.65 -0.7 700,649 + B158DRAFT_0699 0.70 -1.2 700,737 - B158DRAFT_0699 0.82 +3.6 700,804 - +1.0 700,815 + -1.7 700,823 - -1.6 700,835 + +1.4 700,894 + -1.6 700,967 - B158DRAFT_0700 0.17 +3.9 701,013 - B158DRAFT_0700 0.24 +0.1
Or see this region's nucleotide sequence