Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0489

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0486 and B158DRAFT_0487 are separated by 37 nucleotidesB158DRAFT_0487 and B158DRAFT_0488 are separated by 74 nucleotidesB158DRAFT_0488 and B158DRAFT_0489 are separated by 60 nucleotidesB158DRAFT_0489 and B158DRAFT_0490 are separated by 36 nucleotides B158DRAFT_0486: B158DRAFT_0486 - iron-sulfur cluster binding protein, putative, at 486,608 to 487,756 _0486 B158DRAFT_0487: B158DRAFT_0487 - Cytochrome c5, at 487,794 to 488,108 _0487 B158DRAFT_0488: B158DRAFT_0488 - Cytochrome c5, at 488,183 to 488,623 _0488 B158DRAFT_0489: B158DRAFT_0489 - uncharacterized domain 1, at 488,684 to 489,307 _0489 B158DRAFT_0490: B158DRAFT_0490 - rarD protein, at 489,344 to 490,264 _0490 Position (kb) 488 489 490Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 487.769 kb on + strandat 487.818 kb on + strandat 487.818 kb on + strandat 487.818 kb on + strandat 487.820 kb on - strandat 487.826 kb on - strand, within B158DRAFT_0487at 487.864 kb on + strand, within B158DRAFT_0487at 487.864 kb on + strand, within B158DRAFT_0487at 487.864 kb on + strand, within B158DRAFT_0487at 487.872 kb on - strand, within B158DRAFT_0487at 487.872 kb on - strand, within B158DRAFT_0487at 487.872 kb on - strand, within B158DRAFT_0487at 487.887 kb on - strand, within B158DRAFT_0487at 487.929 kb on - strand, within B158DRAFT_0487at 487.954 kb on - strand, within B158DRAFT_0487at 487.970 kb on - strand, within B158DRAFT_0487at 487.970 kb on - strand, within B158DRAFT_0487at 488.032 kb on - strand, within B158DRAFT_0487at 488.042 kb on + strand, within B158DRAFT_0487at 488.042 kb on + strand, within B158DRAFT_0487at 488.050 kb on - strand, within B158DRAFT_0487at 488.096 kb on - strandat 488.168 kb on + strandat 488.173 kb on + strandat 488.239 kb on + strand, within B158DRAFT_0488at 488.243 kb on - strand, within B158DRAFT_0488at 488.299 kb on - strand, within B158DRAFT_0488at 488.312 kb on - strand, within B158DRAFT_0488at 488.322 kb on + strand, within B158DRAFT_0488at 488.322 kb on + strand, within B158DRAFT_0488at 488.397 kb on + strand, within B158DRAFT_0488at 488.410 kb on + strand, within B158DRAFT_0488at 488.410 kb on + strand, within B158DRAFT_0488at 488.418 kb on - strand, within B158DRAFT_0488at 488.418 kb on - strand, within B158DRAFT_0488at 488.508 kb on + strand, within B158DRAFT_0488at 488.516 kb on - strand, within B158DRAFT_0488at 488.516 kb on - strand, within B158DRAFT_0488at 488.516 kb on - strand, within B158DRAFT_0488at 488.545 kb on + strand, within B158DRAFT_0488at 488.619 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.652 kb on - strandat 488.654 kb on + strandat 488.692 kb on + strandat 488.700 kb on - strandat 488.814 kb on - strand, within B158DRAFT_0489at 488.836 kb on - strand, within B158DRAFT_0489at 488.916 kb on + strand, within B158DRAFT_0489at 489.038 kb on + strand, within B158DRAFT_0489at 489.038 kb on + strand, within B158DRAFT_0489at 489.038 kb on + strand, within B158DRAFT_0489at 489.141 kb on + strand, within B158DRAFT_0489at 489.190 kb on - strand, within B158DRAFT_0489at 489.205 kb on + strand, within B158DRAFT_0489at 489.226 kb on + strand, within B158DRAFT_0489at 489.234 kb on - strand, within B158DRAFT_0489at 489.301 kb on + strandat 489.303 kb on - strandat 489.315 kb on - strandat 489.365 kb on + strandat 489.373 kb on - strandat 489.378 kb on - strandat 489.410 kb on + strandat 489.418 kb on + strandat 489.436 kb on - strand, within B158DRAFT_0490at 489.469 kb on + strand, within B158DRAFT_0490at 489.469 kb on + strand, within B158DRAFT_0490at 489.469 kb on + strand, within B158DRAFT_0490at 489.474 kb on + strand, within B158DRAFT_0490at 489.474 kb on + strand, within B158DRAFT_0490at 489.474 kb on + strand, within B158DRAFT_0490at 489.474 kb on + strand, within B158DRAFT_0490at 489.477 kb on - strand, within B158DRAFT_0490at 489.477 kb on - strand, within B158DRAFT_0490at 489.482 kb on - strand, within B158DRAFT_0490at 489.482 kb on - strand, within B158DRAFT_0490at 489.635 kb on + strand, within B158DRAFT_0490at 489.665 kb on + strand, within B158DRAFT_0490at 489.673 kb on - strand, within B158DRAFT_0490at 489.680 kb on + strand, within B158DRAFT_0490at 489.792 kb on + strand, within B158DRAFT_0490at 489.792 kb on + strand, within B158DRAFT_0490at 489.792 kb on + strand, within B158DRAFT_0490at 489.800 kb on - strand, within B158DRAFT_0490at 489.824 kb on + strand, within B158DRAFT_0490at 489.832 kb on - strand, within B158DRAFT_0490at 489.832 kb on - strand, within B158DRAFT_0490at 489.832 kb on - strand, within B158DRAFT_0490at 489.847 kb on + strand, within B158DRAFT_0490at 489.847 kb on + strand, within B158DRAFT_0490at 489.847 kb on + strand, within B158DRAFT_0490at 489.847 kb on + strand, within B158DRAFT_0490at 489.847 kb on + strand, within B158DRAFT_0490at 489.855 kb on - strand, within B158DRAFT_0490at 489.855 kb on - strand, within B158DRAFT_0490at 489.855 kb on - strand, within B158DRAFT_0490at 489.855 kb on - strand, within B158DRAFT_0490at 489.855 kb on - strand, within B158DRAFT_0490at 489.911 kb on + strand, within B158DRAFT_0490at 489.919 kb on - strand, within B158DRAFT_0490at 489.924 kb on + strand, within B158DRAFT_0490at 489.958 kb on - strand, within B158DRAFT_0490at 489.958 kb on - strand, within B158DRAFT_0490at 490.024 kb on - strand, within B158DRAFT_0490at 490.032 kb on - strand, within B158DRAFT_0490at 490.065 kb on + strand, within B158DRAFT_0490at 490.065 kb on + strand, within B158DRAFT_0490at 490.075 kb on + strand, within B158DRAFT_0490at 490.088 kb on + strand, within B158DRAFT_0490at 490.096 kb on - strand, within B158DRAFT_0490at 490.152 kb on + strand, within B158DRAFT_0490at 490.152 kb on + strand, within B158DRAFT_0490at 490.152 kb on + strand, within B158DRAFT_0490at 490.152 kb on - strand, within B158DRAFT_0490at 490.160 kb on - strand, within B158DRAFT_0490at 490.160 kb on - strand, within B158DRAFT_0490at 490.160 kb on - strand, within B158DRAFT_0490at 490.162 kb on + strand, within B158DRAFT_0490at 490.162 kb on + strand, within B158DRAFT_0490at 490.165 kb on - strand, within B158DRAFT_0490at 490.165 kb on - strand, within B158DRAFT_0490at 490.167 kb on + strand, within B158DRAFT_0490at 490.167 kb on + strand, within B158DRAFT_0490at 490.170 kb on - strand, within B158DRAFT_0490at 490.170 kb on - strand, within B158DRAFT_0490at 490.170 kb on - strand, within B158DRAFT_0490at 490.172 kb on + strand, within B158DRAFT_0490at 490.172 kb on + strand, within B158DRAFT_0490at 490.172 kb on + strand, within B158DRAFT_0490at 490.175 kb on - strandat 490.180 kb on - strandat 490.265 kb on + strandat 490.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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487,769 + -0.6
487,818 + +0.4
487,818 + -1.0
487,818 + -0.4
487,820 - +0.4
487,826 - B158DRAFT_0487 0.10 +0.0
487,864 + B158DRAFT_0487 0.22 -0.5
487,864 + B158DRAFT_0487 0.22 +0.9
487,864 + B158DRAFT_0487 0.22 +1.6
487,872 - B158DRAFT_0487 0.25 -0.6
487,872 - B158DRAFT_0487 0.25 -0.6
487,872 - B158DRAFT_0487 0.25 +0.6
487,887 - B158DRAFT_0487 0.30 -0.3
487,929 - B158DRAFT_0487 0.43 -0.0
487,954 - B158DRAFT_0487 0.51 -0.6
487,970 - B158DRAFT_0487 0.56 +0.5
487,970 - B158DRAFT_0487 0.56 +0.7
488,032 - B158DRAFT_0487 0.76 +0.9
488,042 + B158DRAFT_0487 0.79 +1.1
488,042 + B158DRAFT_0487 0.79 +1.4
488,050 - B158DRAFT_0487 0.81 +1.3
488,096 - -0.9
488,168 + +0.2
488,173 + +1.6
488,239 + B158DRAFT_0488 0.13 +2.2
488,243 - B158DRAFT_0488 0.14 +1.4
488,299 - B158DRAFT_0488 0.26 +1.4
488,312 - B158DRAFT_0488 0.29 +1.2
488,322 + B158DRAFT_0488 0.32 +1.3
488,322 + B158DRAFT_0488 0.32 +2.7
488,397 + B158DRAFT_0488 0.49 +2.5
488,410 + B158DRAFT_0488 0.51 +1.9
488,410 + B158DRAFT_0488 0.51 +1.0
488,418 - B158DRAFT_0488 0.53 +1.1
488,418 - B158DRAFT_0488 0.53 +1.4
488,508 + B158DRAFT_0488 0.74 +3.6
488,516 - B158DRAFT_0488 0.76 +1.9
488,516 - B158DRAFT_0488 0.76 +1.5
488,516 - B158DRAFT_0488 0.76 +1.5
488,545 + B158DRAFT_0488 0.82 +1.8
488,619 + +1.6
488,637 + +1.6
488,637 + +2.3
488,637 + +1.4
488,637 + +2.5
488,637 + +1.8
488,645 - +0.3
488,645 - +1.5
488,645 - +0.2
488,645 - -0.6
488,645 - -0.1
488,645 - -0.1
488,645 - +0.8
488,652 - +0.2
488,654 + +1.4
488,692 + -0.0
488,700 - -2.2
488,814 - B158DRAFT_0489 0.21 -0.6
488,836 - B158DRAFT_0489 0.24 +1.6
488,916 + B158DRAFT_0489 0.37 -1.0
489,038 + B158DRAFT_0489 0.57 -1.2
489,038 + B158DRAFT_0489 0.57 -0.7
489,038 + B158DRAFT_0489 0.57 -2.0
489,141 + B158DRAFT_0489 0.73 -2.7
489,190 - B158DRAFT_0489 0.81 +0.2
489,205 + B158DRAFT_0489 0.83 -1.4
489,226 + B158DRAFT_0489 0.87 +0.7
489,234 - B158DRAFT_0489 0.88 -1.6
489,301 + -0.5
489,303 - -1.3
489,315 - -1.7
489,365 + -0.9
489,373 - -1.2
489,378 - +0.1
489,410 + -0.3
489,418 + -0.6
489,436 - B158DRAFT_0490 0.10 -1.5
489,469 + B158DRAFT_0490 0.14 -0.5
489,469 + B158DRAFT_0490 0.14 -1.3
489,469 + B158DRAFT_0490 0.14 -0.8
489,474 + B158DRAFT_0490 0.14 +0.4
489,474 + B158DRAFT_0490 0.14 -0.7
489,474 + B158DRAFT_0490 0.14 +0.4
489,474 + B158DRAFT_0490 0.14 -0.2
489,477 - B158DRAFT_0490 0.14 -0.6
489,477 - B158DRAFT_0490 0.14 -1.6
489,482 - B158DRAFT_0490 0.15 -0.4
489,482 - B158DRAFT_0490 0.15 -0.9
489,635 + B158DRAFT_0490 0.32 -0.9
489,665 + B158DRAFT_0490 0.35 -1.9
489,673 - B158DRAFT_0490 0.36 +0.1
489,680 + B158DRAFT_0490 0.36 +0.6
489,792 + B158DRAFT_0490 0.49 -0.6
489,792 + B158DRAFT_0490 0.49 -0.6
489,792 + B158DRAFT_0490 0.49 -0.2
489,800 - B158DRAFT_0490 0.50 -1.0
489,824 + B158DRAFT_0490 0.52 +1.2
489,832 - B158DRAFT_0490 0.53 -1.2
489,832 - B158DRAFT_0490 0.53 -1.0
489,832 - B158DRAFT_0490 0.53 -0.9
489,847 + B158DRAFT_0490 0.55 -1.9
489,847 + B158DRAFT_0490 0.55 -0.5
489,847 + B158DRAFT_0490 0.55 -0.1
489,847 + B158DRAFT_0490 0.55 -0.9
489,847 + B158DRAFT_0490 0.55 -0.9
489,855 - B158DRAFT_0490 0.55 -0.2
489,855 - B158DRAFT_0490 0.55 -1.4
489,855 - B158DRAFT_0490 0.55 +1.2
489,855 - B158DRAFT_0490 0.55 -0.3
489,855 - B158DRAFT_0490 0.55 -1.1
489,911 + B158DRAFT_0490 0.62 -0.5
489,919 - B158DRAFT_0490 0.62 -1.3
489,924 + B158DRAFT_0490 0.63 -3.3
489,958 - B158DRAFT_0490 0.67 -0.2
489,958 - B158DRAFT_0490 0.67 -2.4
490,024 - B158DRAFT_0490 0.74 -0.1
490,032 - B158DRAFT_0490 0.75 -0.3
490,065 + B158DRAFT_0490 0.78 -1.3
490,065 + B158DRAFT_0490 0.78 -1.5
490,075 + B158DRAFT_0490 0.79 +0.7
490,088 + B158DRAFT_0490 0.81 -1.1
490,096 - B158DRAFT_0490 0.82 +0.3
490,152 + B158DRAFT_0490 0.88 -1.1
490,152 + B158DRAFT_0490 0.88 -1.9
490,152 + B158DRAFT_0490 0.88 -1.7
490,152 - B158DRAFT_0490 0.88 +0.4
490,160 - B158DRAFT_0490 0.89 -1.2
490,160 - B158DRAFT_0490 0.89 -0.1
490,160 - B158DRAFT_0490 0.89 -0.8
490,162 + B158DRAFT_0490 0.89 +0.7
490,162 + B158DRAFT_0490 0.89 +1.3
490,165 - B158DRAFT_0490 0.89 -2.1
490,165 - B158DRAFT_0490 0.89 -0.2
490,167 + B158DRAFT_0490 0.89 -1.0
490,167 + B158DRAFT_0490 0.89 +0.2
490,170 - B158DRAFT_0490 0.90 -0.2
490,170 - B158DRAFT_0490 0.90 +0.3
490,170 - B158DRAFT_0490 0.90 -0.0
490,172 + B158DRAFT_0490 0.90 -0.7
490,172 + B158DRAFT_0490 0.90 -0.2
490,172 + B158DRAFT_0490 0.90 +2.2
490,175 - +0.6
490,180 - -0.7
490,265 + +0.5
490,305 + -1.2

Or see this region's nucleotide sequence