Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0352 and B158DRAFT_0353 are separated by 6 nucleotides B158DRAFT_0353 and B158DRAFT_0354 are separated by 132 nucleotides B158DRAFT_0354 and B158DRAFT_0355 are separated by 72 nucleotides
B158DRAFT_0352: B158DRAFT_0352 - ATP-dependent DNA helicase Rep (EC 3.6.1.-), at 353,470 to 355,536
_0352
B158DRAFT_0353: B158DRAFT_0353 - Lactoylglutathione lyase and related lyases, at 355,543 to 355,935
_0353
B158DRAFT_0354: B158DRAFT_0354 - hypothetical protein, at 356,068 to 356,211
_0354
B158DRAFT_0355: B158DRAFT_0355 - fatty oxidation complex, beta subunit FadA, at 356,284 to 357,453
_0355
Position (kb) 355
356 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 354.586 kb on + strand, within B158DRAFT_0352 at 354.605 kb on + strand, within B158DRAFT_0352 at 354.678 kb on + strand, within B158DRAFT_0352 at 354.686 kb on - strand, within B158DRAFT_0352 at 354.702 kb on + strand, within B158DRAFT_0352 at 354.702 kb on + strand, within B158DRAFT_0352 at 354.702 kb on + strand, within B158DRAFT_0352 at 354.746 kb on - strand, within B158DRAFT_0352 at 354.758 kb on + strand, within B158DRAFT_0352 at 354.758 kb on + strand, within B158DRAFT_0352 at 354.773 kb on + strand, within B158DRAFT_0352 at 354.773 kb on + strand, within B158DRAFT_0352 at 354.773 kb on + strand, within B158DRAFT_0352 at 354.781 kb on - strand, within B158DRAFT_0352 at 354.781 kb on - strand, within B158DRAFT_0352 at 354.781 kb on - strand, within B158DRAFT_0352 at 354.842 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.861 kb on + strand, within B158DRAFT_0352 at 354.863 kb on - strand, within B158DRAFT_0352 at 354.869 kb on - strand, within B158DRAFT_0352 at 354.869 kb on - strand, within B158DRAFT_0352 at 354.869 kb on - strand, within B158DRAFT_0352 at 354.869 kb on - strand, within B158DRAFT_0352 at 354.869 kb on - strand, within B158DRAFT_0352 at 354.869 kb on - strand, within B158DRAFT_0352 at 354.923 kb on - strand, within B158DRAFT_0352 at 354.928 kb on - strand, within B158DRAFT_0352 at 354.938 kb on + strand, within B158DRAFT_0352 at 354.946 kb on - strand, within B158DRAFT_0352 at 354.946 kb on - strand, within B158DRAFT_0352 at 354.957 kb on - strand, within B158DRAFT_0352 at 354.957 kb on - strand, within B158DRAFT_0352 at 355.015 kb on + strand, within B158DRAFT_0352 at 355.048 kb on + strand, within B158DRAFT_0352 at 355.078 kb on - strand, within B158DRAFT_0352 at 355.092 kb on + strand, within B158DRAFT_0352 at 355.123 kb on - strand, within B158DRAFT_0352 at 355.349 kb on + strand at 355.386 kb on + strand at 355.395 kb on - strand at 355.395 kb on - strand at 355.572 kb on - strand at 355.609 kb on - strand, within B158DRAFT_0353 at 355.727 kb on + strand, within B158DRAFT_0353 at 355.727 kb on + strand, within B158DRAFT_0353 at 355.769 kb on - strand, within B158DRAFT_0353 at 355.831 kb on - strand, within B158DRAFT_0353 at 355.845 kb on + strand, within B158DRAFT_0353 at 355.853 kb on - strand, within B158DRAFT_0353 at 355.922 kb on + strand at 355.959 kb on + strand at 355.959 kb on + strand at 355.967 kb on - strand at 355.979 kb on + strand at 356.061 kb on - strand at 356.327 kb on + strand at 356.431 kb on + strand, within B158DRAFT_0355 at 356.433 kb on + strand, within B158DRAFT_0355 at 356.438 kb on - strand, within B158DRAFT_0355 at 356.491 kb on + strand, within B158DRAFT_0355 at 356.599 kb on - strand, within B158DRAFT_0355 at 356.672 kb on - strand, within B158DRAFT_0355 at 356.704 kb on - strand, within B158DRAFT_0355 at 356.923 kb on - strand, within B158DRAFT_0355
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 354,586 + B158DRAFT_0352 0.54 +6.4 354,605 + B158DRAFT_0352 0.55 +5.6 354,678 + B158DRAFT_0352 0.58 +5.4 354,686 - B158DRAFT_0352 0.59 +6.0 354,702 + B158DRAFT_0352 0.60 +6.6 354,702 + B158DRAFT_0352 0.60 +5.5 354,702 + B158DRAFT_0352 0.60 +5.6 354,746 - B158DRAFT_0352 0.62 +5.7 354,758 + B158DRAFT_0352 0.62 +6.0 354,758 + B158DRAFT_0352 0.62 +5.8 354,773 + B158DRAFT_0352 0.63 +5.3 354,773 + B158DRAFT_0352 0.63 +5.7 354,773 + B158DRAFT_0352 0.63 +4.8 354,781 - B158DRAFT_0352 0.63 +5.4 354,781 - B158DRAFT_0352 0.63 +6.5 354,781 - B158DRAFT_0352 0.63 +5.4 354,842 + B158DRAFT_0352 0.66 +5.3 354,861 + B158DRAFT_0352 0.67 +5.1 354,861 + B158DRAFT_0352 0.67 +5.3 354,861 + B158DRAFT_0352 0.67 +5.8 354,861 + B158DRAFT_0352 0.67 +5.4 354,861 + B158DRAFT_0352 0.67 +5.1 354,861 + B158DRAFT_0352 0.67 +5.5 354,861 + B158DRAFT_0352 0.67 +4.4 354,861 + B158DRAFT_0352 0.67 +6.9 354,863 - B158DRAFT_0352 0.67 +5.5 354,869 - B158DRAFT_0352 0.68 +5.3 354,869 - B158DRAFT_0352 0.68 +6.2 354,869 - B158DRAFT_0352 0.68 +5.8 354,869 - B158DRAFT_0352 0.68 +5.6 354,869 - B158DRAFT_0352 0.68 +5.2 354,869 - B158DRAFT_0352 0.68 +5.9 354,923 - B158DRAFT_0352 0.70 +5.4 354,928 - B158DRAFT_0352 0.71 +5.6 354,938 + B158DRAFT_0352 0.71 +5.0 354,946 - B158DRAFT_0352 0.71 +5.0 354,946 - B158DRAFT_0352 0.71 +6.0 354,957 - B158DRAFT_0352 0.72 +5.6 354,957 - B158DRAFT_0352 0.72 +5.8 355,015 + B158DRAFT_0352 0.75 +6.5 355,048 + B158DRAFT_0352 0.76 +5.4 355,078 - B158DRAFT_0352 0.78 +5.8 355,092 + B158DRAFT_0352 0.78 +5.7 355,123 - B158DRAFT_0352 0.80 +5.6 355,349 + +6.1 355,386 + +5.7 355,395 - +4.6 355,395 - +5.2 355,572 - +0.1 355,609 - B158DRAFT_0353 0.17 +0.1 355,727 + B158DRAFT_0353 0.47 -0.0 355,727 + B158DRAFT_0353 0.47 +0.4 355,769 - B158DRAFT_0353 0.58 -0.8 355,831 - B158DRAFT_0353 0.73 -0.3 355,845 + B158DRAFT_0353 0.77 +1.4 355,853 - B158DRAFT_0353 0.79 -0.4 355,922 + +2.0 355,959 + -2.3 355,959 + -1.8 355,967 - +1.0 355,979 + -0.5 356,061 - +0.8 356,327 + +1.0 356,431 + B158DRAFT_0355 0.13 -0.3 356,433 + B158DRAFT_0355 0.13 +0.6 356,438 - B158DRAFT_0355 0.13 +0.1 356,491 + B158DRAFT_0355 0.18 -2.1 356,599 - B158DRAFT_0355 0.27 +0.3 356,672 - B158DRAFT_0355 0.33 -2.2 356,704 - B158DRAFT_0355 0.36 -0.7 356,923 - B158DRAFT_0355 0.55 +0.4
Or see this region's nucleotide sequence