Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2411 and B158DRAFT_2412 are separated by 163 nucleotides B158DRAFT_2412 and B158DRAFT_2413 are separated by 16 nucleotides B158DRAFT_2413 and B158DRAFT_2414 are separated by 9 nucleotides B158DRAFT_2414 and B158DRAFT_2415 are separated by 14 nucleotides
B158DRAFT_2411: B158DRAFT_2411 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 582,797 to 583,732
_2411
B158DRAFT_2412: B158DRAFT_2412 - type IV pilus modification protein PilV, at 583,896 to 584,561
_2412
B158DRAFT_2413: B158DRAFT_2413 - prepilin-type N-terminal cleavage/methylation domain, at 584,578 to 585,306
_2413
B158DRAFT_2414: B158DRAFT_2414 - hypothetical protein, at 585,316 to 585,879
_2414
B158DRAFT_2415: B158DRAFT_2415 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 585,894 to 588,968
_2415
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 583.734 kb on + strand at 583.742 kb on - strand at 583.742 kb on - strand at 583.754 kb on + strand at 583.805 kb on + strand at 583.805 kb on + strand at 583.819 kb on - strand at 583.823 kb on + strand at 583.918 kb on + strand at 583.926 kb on - strand at 583.928 kb on + strand at 583.928 kb on + strand at 583.928 kb on + strand at 583.928 kb on + strand at 583.928 kb on + strand at 583.928 kb on + strand at 583.928 kb on + strand at 583.936 kb on - strand at 583.936 kb on - strand at 583.936 kb on - strand at 583.936 kb on - strand at 583.948 kb on + strand at 583.948 kb on - strand at 584.065 kb on + strand, within B158DRAFT_2412 at 584.094 kb on + strand, within B158DRAFT_2412 at 584.119 kb on - strand, within B158DRAFT_2412 at 584.236 kb on + strand, within B158DRAFT_2412 at 584.246 kb on + strand, within B158DRAFT_2412 at 584.279 kb on + strand, within B158DRAFT_2412 at 584.301 kb on - strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.333 kb on + strand, within B158DRAFT_2412 at 584.338 kb on + strand, within B158DRAFT_2412 at 584.338 kb on + strand, within B158DRAFT_2412 at 584.338 kb on + strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.341 kb on - strand, within B158DRAFT_2412 at 584.346 kb on - strand, within B158DRAFT_2412 at 584.346 kb on - strand, within B158DRAFT_2412 at 584.346 kb on - strand, within B158DRAFT_2412 at 584.389 kb on + strand, within B158DRAFT_2412 at 584.389 kb on + strand, within B158DRAFT_2412 at 584.389 kb on + strand, within B158DRAFT_2412 at 584.389 kb on + strand, within B158DRAFT_2412 at 584.389 kb on + strand, within B158DRAFT_2412 at 584.389 kb on + strand, within B158DRAFT_2412 at 584.397 kb on - strand, within B158DRAFT_2412 at 584.397 kb on - strand, within B158DRAFT_2412 at 584.397 kb on - strand, within B158DRAFT_2412 at 584.397 kb on - strand, within B158DRAFT_2412 at 584.397 kb on - strand, within B158DRAFT_2412 at 584.410 kb on - strand, within B158DRAFT_2412 at 584.499 kb on + strand at 584.507 kb on - strand at 584.507 kb on - strand at 584.603 kb on + strand at 584.611 kb on - strand at 584.611 kb on - strand at 584.787 kb on - strand, within B158DRAFT_2413 at 584.823 kb on - strand, within B158DRAFT_2413 at 584.843 kb on + strand, within B158DRAFT_2413 at 584.878 kb on + strand, within B158DRAFT_2413 at 584.921 kb on - strand, within B158DRAFT_2413 at 584.978 kb on - strand, within B158DRAFT_2413 at 585.014 kb on + strand, within B158DRAFT_2413 at 585.014 kb on + strand, within B158DRAFT_2413 at 585.057 kb on + strand, within B158DRAFT_2413 at 585.058 kb on + strand, within B158DRAFT_2413 at 585.058 kb on - strand, within B158DRAFT_2413 at 585.127 kb on + strand, within B158DRAFT_2413 at 585.187 kb on + strand, within B158DRAFT_2413 at 585.195 kb on - strand, within B158DRAFT_2413 at 585.497 kb on - strand, within B158DRAFT_2414 at 585.497 kb on - strand, within B158DRAFT_2414 at 585.667 kb on + strand, within B158DRAFT_2414 at 585.826 kb on + strand at 585.956 kb on - strand at 586.029 kb on + strand at 586.056 kb on - strand at 586.139 kb on + strand at 586.139 kb on + strand at 586.147 kb on - strand at 586.211 kb on - strand, within B158DRAFT_2415 at 586.211 kb on - strand, within B158DRAFT_2415 at 586.240 kb on + strand, within B158DRAFT_2415 at 586.241 kb on - strand, within B158DRAFT_2415 at 586.266 kb on + strand, within B158DRAFT_2415
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 583,734 + -0.5 583,742 - -0.7 583,742 - -0.7 583,754 + +0.1 583,805 + -1.5 583,805 + -0.2 583,819 - -0.1 583,823 + -0.9 583,918 + -0.8 583,926 - -1.2 583,928 + -1.0 583,928 + -2.8 583,928 + -0.0 583,928 + +2.2 583,928 + +0.2 583,928 + -0.8 583,928 + +0.8 583,936 - -0.3 583,936 - -0.0 583,936 - -1.8 583,936 - -1.0 583,948 + -1.3 583,948 - +0.6 584,065 + B158DRAFT_2412 0.25 -2.2 584,094 + B158DRAFT_2412 0.30 -0.4 584,119 - B158DRAFT_2412 0.33 -2.2 584,236 + B158DRAFT_2412 0.51 -0.9 584,246 + B158DRAFT_2412 0.53 -0.6 584,279 + B158DRAFT_2412 0.58 -0.8 584,301 - B158DRAFT_2412 0.61 -0.7 584,333 + B158DRAFT_2412 0.66 -1.3 584,333 + B158DRAFT_2412 0.66 +1.2 584,333 + B158DRAFT_2412 0.66 -1.4 584,333 + B158DRAFT_2412 0.66 -1.7 584,333 + B158DRAFT_2412 0.66 -0.9 584,333 + B158DRAFT_2412 0.66 +0.7 584,333 + B158DRAFT_2412 0.66 -1.3 584,333 + B158DRAFT_2412 0.66 -0.4 584,333 + B158DRAFT_2412 0.66 +0.1 584,338 + B158DRAFT_2412 0.66 -2.3 584,338 + B158DRAFT_2412 0.66 -2.4 584,338 + B158DRAFT_2412 0.66 -1.0 584,341 - B158DRAFT_2412 0.67 -3.2 584,341 - B158DRAFT_2412 0.67 -0.3 584,341 - B158DRAFT_2412 0.67 -0.9 584,341 - B158DRAFT_2412 0.67 -0.2 584,341 - B158DRAFT_2412 0.67 -0.9 584,341 - B158DRAFT_2412 0.67 +0.2 584,341 - B158DRAFT_2412 0.67 +0.9 584,341 - B158DRAFT_2412 0.67 -1.2 584,341 - B158DRAFT_2412 0.67 -0.0 584,341 - B158DRAFT_2412 0.67 -0.9 584,346 - B158DRAFT_2412 0.68 -0.6 584,346 - B158DRAFT_2412 0.68 -0.3 584,346 - B158DRAFT_2412 0.68 -0.1 584,389 + B158DRAFT_2412 0.74 -1.0 584,389 + B158DRAFT_2412 0.74 -2.6 584,389 + B158DRAFT_2412 0.74 -0.1 584,389 + B158DRAFT_2412 0.74 +0.8 584,389 + B158DRAFT_2412 0.74 -1.1 584,389 + B158DRAFT_2412 0.74 -0.5 584,397 - B158DRAFT_2412 0.75 +1.4 584,397 - B158DRAFT_2412 0.75 -0.1 584,397 - B158DRAFT_2412 0.75 +2.7 584,397 - B158DRAFT_2412 0.75 -0.4 584,397 - B158DRAFT_2412 0.75 -0.2 584,410 - B158DRAFT_2412 0.77 -0.8 584,499 + -0.5 584,507 - -2.9 584,507 - -0.1 584,603 + -0.6 584,611 - -1.2 584,611 - +0.1 584,787 - B158DRAFT_2413 0.29 -1.7 584,823 - B158DRAFT_2413 0.34 -2.0 584,843 + B158DRAFT_2413 0.36 +6.4 584,878 + B158DRAFT_2413 0.41 +1.5 584,921 - B158DRAFT_2413 0.47 -1.3 584,978 - B158DRAFT_2413 0.55 -1.7 585,014 + B158DRAFT_2413 0.60 +1.3 585,014 + B158DRAFT_2413 0.60 -1.9 585,057 + B158DRAFT_2413 0.66 -0.0 585,058 + B158DRAFT_2413 0.66 +0.2 585,058 - B158DRAFT_2413 0.66 -0.8 585,127 + B158DRAFT_2413 0.75 -0.6 585,187 + B158DRAFT_2413 0.84 -0.5 585,195 - B158DRAFT_2413 0.85 +0.4 585,497 - B158DRAFT_2414 0.32 -2.0 585,497 - B158DRAFT_2414 0.32 -0.8 585,667 + B158DRAFT_2414 0.62 -2.5 585,826 + -1.8 585,956 - -1.5 586,029 + -2.0 586,056 - -0.3 586,139 + +1.1 586,139 + +1.1 586,147 - -1.5 586,211 - B158DRAFT_2415 0.10 -1.1 586,211 - B158DRAFT_2415 0.10 +0.1 586,240 + B158DRAFT_2415 0.11 -1.1 586,241 - B158DRAFT_2415 0.11 -0.4 586,266 + B158DRAFT_2415 0.12 +1.1
Or see this region's nucleotide sequence