Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1936

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1934 and B158DRAFT_1935 overlap by 8 nucleotidesB158DRAFT_1935 and B158DRAFT_1936 are separated by 13 nucleotidesB158DRAFT_1936 and B158DRAFT_1937 are separated by 24 nucleotidesB158DRAFT_1937 and B158DRAFT_1938 are separated by 127 nucleotides B158DRAFT_1934: B158DRAFT_1934 - Protein of unknown function (DUF2889)., at 70,513 to 71,088 _1934 B158DRAFT_1935: B158DRAFT_1935 - Uncharacterized protein conserved in bacteria, at 71,081 to 71,419 _1935 B158DRAFT_1936: B158DRAFT_1936 - transcriptional regulator, TraR/DksA family, at 71,433 to 71,804 _1936 B158DRAFT_1937: B158DRAFT_1937 - O-6-methylguanine DNA methyltransferase, at 71,829 to 72,236 _1937 B158DRAFT_1938: B158DRAFT_1938 - Bacterial protein of unknown function (DUF937)., at 72,364 to 72,909 _1938 Position (kb) 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3at 70.612 kb on + strand, within B158DRAFT_1934at 70.623 kb on + strand, within B158DRAFT_1934at 70.688 kb on + strand, within B158DRAFT_1934at 70.696 kb on - strand, within B158DRAFT_1934at 70.696 kb on - strand, within B158DRAFT_1934at 70.750 kb on - strand, within B158DRAFT_1934at 70.799 kb on - strand, within B158DRAFT_1934at 70.800 kb on + strand, within B158DRAFT_1934at 70.808 kb on - strand, within B158DRAFT_1934at 70.808 kb on - strand, within B158DRAFT_1934at 70.815 kb on - strand, within B158DRAFT_1934at 70.840 kb on + strand, within B158DRAFT_1934at 70.859 kb on + strand, within B158DRAFT_1934at 70.859 kb on + strand, within B158DRAFT_1934at 70.859 kb on + strand, within B158DRAFT_1934at 70.859 kb on + strand, within B158DRAFT_1934at 70.861 kb on + strand, within B158DRAFT_1934at 70.861 kb on + strand, within B158DRAFT_1934at 70.861 kb on + strand, within B158DRAFT_1934at 70.861 kb on + strand, within B158DRAFT_1934at 70.867 kb on - strand, within B158DRAFT_1934at 70.869 kb on - strand, within B158DRAFT_1934at 70.869 kb on - strand, within B158DRAFT_1934at 70.869 kb on - strand, within B158DRAFT_1934at 70.869 kb on - strand, within B158DRAFT_1934at 70.869 kb on - strand, within B158DRAFT_1934at 70.869 kb on - strand, within B158DRAFT_1934at 70.871 kb on + strand, within B158DRAFT_1934at 70.871 kb on + strand, within B158DRAFT_1934at 70.879 kb on - strand, within B158DRAFT_1934at 70.879 kb on - strand, within B158DRAFT_1934at 70.879 kb on - strand, within B158DRAFT_1934at 71.145 kb on - strand, within B158DRAFT_1935at 71.235 kb on + strand, within B158DRAFT_1935at 71.351 kb on + strand, within B158DRAFT_1935at 71.351 kb on + strand, within B158DRAFT_1935at 71.351 kb on + strand, within B158DRAFT_1935at 71.359 kb on - strand, within B158DRAFT_1935at 71.459 kb on + strandat 71.459 kb on + strandat 71.459 kb on + strandat 71.510 kb on - strand, within B158DRAFT_1936at 71.512 kb on + strand, within B158DRAFT_1936at 71.583 kb on - strand, within B158DRAFT_1936at 71.600 kb on + strand, within B158DRAFT_1936at 71.610 kb on + strand, within B158DRAFT_1936at 71.618 kb on - strand, within B158DRAFT_1936at 71.755 kb on - strand, within B158DRAFT_1936at 71.799 kb on - strandat 71.841 kb on + strandat 71.884 kb on - strand, within B158DRAFT_1937at 71.902 kb on + strand, within B158DRAFT_1937at 71.910 kb on - strand, within B158DRAFT_1937at 71.910 kb on - strand, within B158DRAFT_1937at 71.951 kb on + strand, within B158DRAFT_1937at 71.998 kb on + strand, within B158DRAFT_1937at 71.998 kb on + strand, within B158DRAFT_1937at 72.001 kb on - strand, within B158DRAFT_1937at 72.008 kb on + strand, within B158DRAFT_1937at 72.008 kb on + strand, within B158DRAFT_1937at 72.016 kb on - strand, within B158DRAFT_1937at 72.020 kb on - strand, within B158DRAFT_1937at 72.023 kb on + strand, within B158DRAFT_1937at 72.045 kb on + strand, within B158DRAFT_1937at 72.045 kb on + strand, within B158DRAFT_1937at 72.045 kb on + strand, within B158DRAFT_1937at 72.045 kb on + strand, within B158DRAFT_1937at 72.045 kb on + strand, within B158DRAFT_1937at 72.045 kb on + strand, within B158DRAFT_1937at 72.045 kb on + strand, within B158DRAFT_1937at 72.053 kb on - strand, within B158DRAFT_1937at 72.053 kb on - strand, within B158DRAFT_1937at 72.053 kb on - strand, within B158DRAFT_1937at 72.070 kb on - strand, within B158DRAFT_1937at 72.123 kb on + strand, within B158DRAFT_1937at 72.131 kb on + strand, within B158DRAFT_1937at 72.137 kb on + strand, within B158DRAFT_1937at 72.137 kb on + strand, within B158DRAFT_1937at 72.145 kb on - strand, within B158DRAFT_1937at 72.145 kb on - strand, within B158DRAFT_1937at 72.145 kb on - strand, within B158DRAFT_1937at 72.145 kb on - strand, within B158DRAFT_1937at 72.145 kb on - strand, within B158DRAFT_1937at 72.145 kb on - strand, within B158DRAFT_1937at 72.147 kb on + strand, within B158DRAFT_1937at 72.147 kb on + strand, within B158DRAFT_1937at 72.147 kb on + strand, within B158DRAFT_1937at 72.155 kb on - strand, within B158DRAFT_1937at 72.155 kb on - strand, within B158DRAFT_1937at 72.155 kb on - strand, within B158DRAFT_1937at 72.155 kb on - strand, within B158DRAFT_1937at 72.155 kb on - strand, within B158DRAFT_1937at 72.156 kb on - strand, within B158DRAFT_1937at 72.178 kb on - strand, within B158DRAFT_1937at 72.188 kb on - strand, within B158DRAFT_1937at 72.189 kb on + strand, within B158DRAFT_1937at 72.196 kb on + strandat 72.196 kb on + strandat 72.201 kb on + strandat 72.201 kb on + strandat 72.204 kb on - strandat 72.204 kb on - strandat 72.204 kb on - strandat 72.209 kb on - strandat 72.209 kb on - strandat 72.327 kb on + strandat 72.413 kb on - strandat 72.457 kb on - strand, within B158DRAFT_1938at 72.459 kb on + strand, within B158DRAFT_1938at 72.463 kb on + strand, within B158DRAFT_1938at 72.471 kb on - strand, within B158DRAFT_1938at 72.473 kb on + strand, within B158DRAFT_1938at 72.535 kb on + strand, within B158DRAFT_1938at 72.544 kb on + strand, within B158DRAFT_1938at 72.710 kb on + strand, within B158DRAFT_1938at 72.715 kb on + strand, within B158DRAFT_1938at 72.715 kb on + strand, within B158DRAFT_1938at 72.715 kb on + strand, within B158DRAFT_1938at 72.715 kb on + strand, within B158DRAFT_1938at 72.718 kb on - strand, within B158DRAFT_1938at 72.723 kb on - strand, within B158DRAFT_1938at 72.723 kb on - strand, within B158DRAFT_1938

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
70,612 + B158DRAFT_1934 0.17 -1.1
70,623 + B158DRAFT_1934 0.19 -0.6
70,688 + B158DRAFT_1934 0.30 +0.8
70,696 - B158DRAFT_1934 0.32 -0.2
70,696 - B158DRAFT_1934 0.32 -1.5
70,750 - B158DRAFT_1934 0.41 +0.4
70,799 - B158DRAFT_1934 0.50 +0.2
70,800 + B158DRAFT_1934 0.50 -1.2
70,808 - B158DRAFT_1934 0.51 -1.1
70,808 - B158DRAFT_1934 0.51 +1.8
70,815 - B158DRAFT_1934 0.52 -0.6
70,840 + B158DRAFT_1934 0.57 -0.6
70,859 + B158DRAFT_1934 0.60 +0.0
70,859 + B158DRAFT_1934 0.60 -0.7
70,859 + B158DRAFT_1934 0.60 +0.3
70,859 + B158DRAFT_1934 0.60 -0.2
70,861 + B158DRAFT_1934 0.60 -0.7
70,861 + B158DRAFT_1934 0.60 -0.2
70,861 + B158DRAFT_1934 0.60 -1.1
70,861 + B158DRAFT_1934 0.60 +0.4
70,867 - B158DRAFT_1934 0.61 +2.1
70,869 - B158DRAFT_1934 0.62 -1.5
70,869 - B158DRAFT_1934 0.62 -1.2
70,869 - B158DRAFT_1934 0.62 -1.6
70,869 - B158DRAFT_1934 0.62 -0.5
70,869 - B158DRAFT_1934 0.62 +0.3
70,869 - B158DRAFT_1934 0.62 +0.8
70,871 + B158DRAFT_1934 0.62 -0.5
70,871 + B158DRAFT_1934 0.62 +1.1
70,879 - B158DRAFT_1934 0.64 +0.8
70,879 - B158DRAFT_1934 0.64 -0.5
70,879 - B158DRAFT_1934 0.64 -0.9
71,145 - B158DRAFT_1935 0.19 -1.6
71,235 + B158DRAFT_1935 0.45 -1.0
71,351 + B158DRAFT_1935 0.80 -1.8
71,351 + B158DRAFT_1935 0.80 +0.4
71,351 + B158DRAFT_1935 0.80 +1.5
71,359 - B158DRAFT_1935 0.82 +2.5
71,459 + -0.2
71,459 + +0.5
71,459 + +0.4
71,510 - B158DRAFT_1936 0.21 -1.0
71,512 + B158DRAFT_1936 0.21 -0.5
71,583 - B158DRAFT_1936 0.40 -1.6
71,600 + B158DRAFT_1936 0.45 -0.4
71,610 + B158DRAFT_1936 0.48 -1.4
71,618 - B158DRAFT_1936 0.50 +1.4
71,755 - B158DRAFT_1936 0.87 +0.7
71,799 - +1.6
71,841 + -2.5
71,884 - B158DRAFT_1937 0.13 +0.2
71,902 + B158DRAFT_1937 0.18 -0.1
71,910 - B158DRAFT_1937 0.20 +2.0
71,910 - B158DRAFT_1937 0.20 -0.2
71,951 + B158DRAFT_1937 0.30 -0.6
71,998 + B158DRAFT_1937 0.41 -2.6
71,998 + B158DRAFT_1937 0.41 -1.8
72,001 - B158DRAFT_1937 0.42 +0.5
72,008 + B158DRAFT_1937 0.44 -1.2
72,008 + B158DRAFT_1937 0.44 -0.2
72,016 - B158DRAFT_1937 0.46 +1.6
72,020 - B158DRAFT_1937 0.47 -0.8
72,023 + B158DRAFT_1937 0.48 -1.1
72,045 + B158DRAFT_1937 0.53 -1.4
72,045 + B158DRAFT_1937 0.53 -1.2
72,045 + B158DRAFT_1937 0.53 -1.8
72,045 + B158DRAFT_1937 0.53 -1.2
72,045 + B158DRAFT_1937 0.53 -1.4
72,045 + B158DRAFT_1937 0.53 -1.3
72,045 + B158DRAFT_1937 0.53 +0.6
72,053 - B158DRAFT_1937 0.55 -1.0
72,053 - B158DRAFT_1937 0.55 +1.8
72,053 - B158DRAFT_1937 0.55 -0.3
72,070 - B158DRAFT_1937 0.59 -1.3
72,123 + B158DRAFT_1937 0.72 +0.1
72,131 + B158DRAFT_1937 0.74 -0.5
72,137 + B158DRAFT_1937 0.75 +0.4
72,137 + B158DRAFT_1937 0.75 -1.6
72,145 - B158DRAFT_1937 0.77 -0.5
72,145 - B158DRAFT_1937 0.77 -0.7
72,145 - B158DRAFT_1937 0.77 +0.8
72,145 - B158DRAFT_1937 0.77 -0.5
72,145 - B158DRAFT_1937 0.77 -0.8
72,145 - B158DRAFT_1937 0.77 +0.5
72,147 + B158DRAFT_1937 0.78 -1.5
72,147 + B158DRAFT_1937 0.78 +0.0
72,147 + B158DRAFT_1937 0.78 -1.3
72,155 - B158DRAFT_1937 0.80 -0.6
72,155 - B158DRAFT_1937 0.80 +0.0
72,155 - B158DRAFT_1937 0.80 -0.6
72,155 - B158DRAFT_1937 0.80 -0.1
72,155 - B158DRAFT_1937 0.80 -2.5
72,156 - B158DRAFT_1937 0.80 -1.0
72,178 - B158DRAFT_1937 0.86 -1.9
72,188 - B158DRAFT_1937 0.88 +0.2
72,189 + B158DRAFT_1937 0.88 -0.6
72,196 + -0.3
72,196 + +1.9
72,201 + -1.4
72,201 + +0.1
72,204 - -0.2
72,204 - -0.5
72,204 - -0.7
72,209 - -0.6
72,209 - -0.8
72,327 + -0.5
72,413 - +0.7
72,457 - B158DRAFT_1938 0.17 -1.5
72,459 + B158DRAFT_1938 0.17 +0.9
72,463 + B158DRAFT_1938 0.18 -0.9
72,471 - B158DRAFT_1938 0.20 +2.9
72,473 + B158DRAFT_1938 0.20 +0.2
72,535 + B158DRAFT_1938 0.31 -2.6
72,544 + B158DRAFT_1938 0.33 -0.6
72,710 + B158DRAFT_1938 0.63 -1.6
72,715 + B158DRAFT_1938 0.64 -1.8
72,715 + B158DRAFT_1938 0.64 +0.5
72,715 + B158DRAFT_1938 0.64 -0.9
72,715 + B158DRAFT_1938 0.64 +1.4
72,718 - B158DRAFT_1938 0.65 -0.5
72,723 - B158DRAFT_1938 0.66 +0.6
72,723 - B158DRAFT_1938 0.66 -0.8

Or see this region's nucleotide sequence