Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1817 and B158DRAFT_1818 are separated by 37 nucleotides B158DRAFT_1818 and B158DRAFT_1819 are separated by 2 nucleotides B158DRAFT_1819 and B158DRAFT_1820 are separated by 6 nucleotides
B158DRAFT_1817: B158DRAFT_1817 - seryl-tRNA synthetase (EC 6.1.1.11), at 1,915,438 to 1,916,706
_1817
B158DRAFT_1818: B158DRAFT_1818 - protein CrcB, at 1,916,744 to 1,917,127
_1818
B158DRAFT_1819: B158DRAFT_1819 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 1,917,130 to 1,918,467
_1819
B158DRAFT_1820: B158DRAFT_1820 - periplasmic chaperone LolA, at 1,918,474 to 1,919,157
_1820
Position (kb)
1917
1918
1919 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1916.829 kb on + strand, within B158DRAFT_1818 at 1916.829 kb on + strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.864 kb on + strand, within B158DRAFT_1818 at 1917.015 kb on - strand, within B158DRAFT_1818 at 1917.093 kb on - strand at 1917.128 kb on + strand at 1917.152 kb on + strand at 1917.160 kb on - strand at 1917.160 kb on - strand at 1917.166 kb on - strand at 1917.166 kb on - strand at 1917.205 kb on + strand at 1917.205 kb on + strand at 1917.220 kb on + strand at 1917.220 kb on - strand at 1917.220 kb on - strand at 1917.220 kb on - strand at 1917.220 kb on - strand at 1917.261 kb on - strand at 1917.303 kb on - strand, within B158DRAFT_1819 at 1917.355 kb on + strand, within B158DRAFT_1819 at 1917.418 kb on - strand, within B158DRAFT_1819 at 1917.430 kb on - strand, within B158DRAFT_1819 at 1917.488 kb on - strand, within B158DRAFT_1819 at 1917.528 kb on + strand, within B158DRAFT_1819 at 1917.528 kb on + strand, within B158DRAFT_1819 at 1917.529 kb on + strand, within B158DRAFT_1819 at 1917.537 kb on - strand, within B158DRAFT_1819 at 1917.691 kb on - strand, within B158DRAFT_1819 at 1917.738 kb on + strand, within B158DRAFT_1819 at 1917.902 kb on + strand, within B158DRAFT_1819 at 1918.028 kb on - strand, within B158DRAFT_1819 at 1918.033 kb on + strand, within B158DRAFT_1819 at 1918.071 kb on + strand, within B158DRAFT_1819 at 1918.071 kb on + strand, within B158DRAFT_1819 at 1918.071 kb on + strand, within B158DRAFT_1819 at 1918.071 kb on + strand, within B158DRAFT_1819 at 1918.079 kb on - strand, within B158DRAFT_1819 at 1918.079 kb on - strand, within B158DRAFT_1819 at 1918.104 kb on - strand, within B158DRAFT_1819 at 1918.151 kb on + strand, within B158DRAFT_1819 at 1918.153 kb on - strand, within B158DRAFT_1819 at 1918.197 kb on + strand, within B158DRAFT_1819 at 1918.197 kb on - strand, within B158DRAFT_1819 at 1918.215 kb on - strand, within B158DRAFT_1819 at 1918.283 kb on + strand, within B158DRAFT_1819 at 1918.369 kb on + strand at 1918.377 kb on - strand at 1918.530 kb on + strand at 1918.530 kb on + strand at 1918.530 kb on + strand at 1918.530 kb on + strand at 1918.530 kb on + strand at 1918.530 kb on + strand at 1918.530 kb on + strand at 1918.530 kb on + strand at 1918.538 kb on - strand at 1918.538 kb on - strand at 1918.538 kb on - strand at 1919.189 kb on + strand at 1919.189 kb on + strand at 1919.189 kb on + strand at 1919.189 kb on + strand at 1919.197 kb on - strand at 1919.197 kb on - strand at 1919.207 kb on - strand at 1919.237 kb on + strand at 1919.263 kb on + strand at 1919.263 kb on + strand at 1919.271 kb on - strand at 1919.271 kb on - strand at 1919.403 kb on + strand at 1919.419 kb on + strand at 1919.440 kb on + strand at 1919.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,916,829 + B158DRAFT_1818 0.22 +0.5 1,916,829 + B158DRAFT_1818 0.22 +1.8 1,916,837 - B158DRAFT_1818 0.24 +0.2 1,916,837 - B158DRAFT_1818 0.24 -0.2 1,916,837 - B158DRAFT_1818 0.24 +0.2 1,916,837 - B158DRAFT_1818 0.24 -0.5 1,916,864 + B158DRAFT_1818 0.31 -0.6 1,917,015 - B158DRAFT_1818 0.71 -0.6 1,917,093 - -2.1 1,917,128 + +1.0 1,917,152 + -0.1 1,917,160 - -0.2 1,917,160 - +0.4 1,917,166 - +0.5 1,917,166 - -1.4 1,917,205 + -0.8 1,917,205 + -1.9 1,917,220 + -0.6 1,917,220 - +0.2 1,917,220 - -1.1 1,917,220 - -1.8 1,917,220 - -1.3 1,917,261 - -0.1 1,917,303 - B158DRAFT_1819 0.13 -0.2 1,917,355 + B158DRAFT_1819 0.17 -0.3 1,917,418 - B158DRAFT_1819 0.22 +0.1 1,917,430 - B158DRAFT_1819 0.22 -0.2 1,917,488 - B158DRAFT_1819 0.27 -0.3 1,917,528 + B158DRAFT_1819 0.30 -0.6 1,917,528 + B158DRAFT_1819 0.30 -0.1 1,917,529 + B158DRAFT_1819 0.30 +0.3 1,917,537 - B158DRAFT_1819 0.30 -0.5 1,917,691 - B158DRAFT_1819 0.42 -2.1 1,917,738 + B158DRAFT_1819 0.45 +0.7 1,917,902 + B158DRAFT_1819 0.58 -0.6 1,918,028 - B158DRAFT_1819 0.67 -0.1 1,918,033 + B158DRAFT_1819 0.67 +1.3 1,918,071 + B158DRAFT_1819 0.70 +0.0 1,918,071 + B158DRAFT_1819 0.70 -0.8 1,918,071 + B158DRAFT_1819 0.70 -1.6 1,918,071 + B158DRAFT_1819 0.70 +0.1 1,918,079 - B158DRAFT_1819 0.71 -0.4 1,918,079 - B158DRAFT_1819 0.71 -0.9 1,918,104 - B158DRAFT_1819 0.73 +0.7 1,918,151 + B158DRAFT_1819 0.76 +0.5 1,918,153 - B158DRAFT_1819 0.76 -0.5 1,918,197 + B158DRAFT_1819 0.80 -0.2 1,918,197 - B158DRAFT_1819 0.80 +0.6 1,918,215 - B158DRAFT_1819 0.81 -1.3 1,918,283 + B158DRAFT_1819 0.86 -0.8 1,918,369 + +0.1 1,918,377 - -1.2 1,918,530 + +0.2 1,918,530 + +0.8 1,918,530 + +1.7 1,918,530 + +0.2 1,918,530 + -0.6 1,918,530 + +0.8 1,918,530 + -0.6 1,918,530 + -0.4 1,918,538 - -0.5 1,918,538 - -0.6 1,918,538 - -0.7 1,919,189 + -0.4 1,919,189 + +0.0 1,919,189 + -1.0 1,919,189 + -2.6 1,919,197 - +0.1 1,919,197 - -1.0 1,919,207 - -1.1 1,919,237 + -0.7 1,919,263 + -1.4 1,919,263 + -1.1 1,919,271 - -1.0 1,919,271 - +0.4 1,919,403 + -0.6 1,919,419 + -1.1 1,919,440 + -0.3 1,919,448 - -0.4
Or see this region's nucleotide sequence