Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1802 and B158DRAFT_1803 are separated by 33 nucleotides B158DRAFT_1803 and B158DRAFT_1804 are separated by 41 nucleotides B158DRAFT_1804 and B158DRAFT_1805 are separated by 283 nucleotides
B158DRAFT_1802: B158DRAFT_1802 - Saccharopine dehydrogenase and related proteins, at 1,901,036 to 1,902,178
_1802
B158DRAFT_1803: B158DRAFT_1803 - Plasmid pRiA4b ORF-3-like protein., at 1,902,212 to 1,902,787
_1803
B158DRAFT_1804: B158DRAFT_1804 - EF hand., at 1,902,829 to 1,903,068
_1804
B158DRAFT_1805: B158DRAFT_1805 - NAD-dependent aldehyde dehydrogenases, at 1,903,352 to 1,904,872
_1805
Position (kb)
1902
1903 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 1901.308 kb on - strand, within B158DRAFT_1802 at 1901.442 kb on + strand, within B158DRAFT_1802 at 1901.458 kb on - strand, within B158DRAFT_1802 at 1901.532 kb on + strand, within B158DRAFT_1802 at 1901.546 kb on + strand, within B158DRAFT_1802 at 1901.621 kb on - strand, within B158DRAFT_1802 at 1901.638 kb on + strand, within B158DRAFT_1802 at 1901.646 kb on + strand, within B158DRAFT_1802 at 1901.646 kb on + strand, within B158DRAFT_1802 at 1901.646 kb on - strand, within B158DRAFT_1802 at 1901.646 kb on - strand, within B158DRAFT_1802 at 1901.654 kb on - strand, within B158DRAFT_1802 at 1901.664 kb on - strand, within B158DRAFT_1802 at 1901.689 kb on - strand, within B158DRAFT_1802 at 1901.716 kb on + strand, within B158DRAFT_1802 at 1901.716 kb on + strand, within B158DRAFT_1802 at 1901.726 kb on - strand, within B158DRAFT_1802 at 1901.728 kb on + strand, within B158DRAFT_1802 at 1901.728 kb on + strand, within B158DRAFT_1802 at 1901.728 kb on + strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.736 kb on - strand, within B158DRAFT_1802 at 1901.744 kb on + strand, within B158DRAFT_1802 at 1901.744 kb on + strand, within B158DRAFT_1802 at 1901.751 kb on - strand, within B158DRAFT_1802 at 1901.863 kb on + strand, within B158DRAFT_1802 at 1901.865 kb on - strand, within B158DRAFT_1802 at 1901.876 kb on + strand, within B158DRAFT_1802 at 1901.936 kb on + strand, within B158DRAFT_1802 at 1901.941 kb on + strand, within B158DRAFT_1802 at 1901.941 kb on + strand, within B158DRAFT_1802 at 1901.941 kb on + strand, within B158DRAFT_1802 at 1901.949 kb on - strand, within B158DRAFT_1802 at 1901.999 kb on + strand, within B158DRAFT_1802 at 1902.067 kb on + strand at 1902.075 kb on - strand at 1902.079 kb on + strand at 1902.079 kb on + strand at 1902.121 kb on - strand at 1902.202 kb on - strand at 1902.259 kb on - strand at 1902.261 kb on + strand at 1902.261 kb on + strand at 1902.269 kb on - strand at 1902.269 kb on - strand at 1902.269 kb on - strand at 1902.269 kb on - strand at 1902.391 kb on + strand, within B158DRAFT_1803 at 1902.402 kb on + strand, within B158DRAFT_1803 at 1902.475 kb on - strand, within B158DRAFT_1803 at 1902.489 kb on + strand, within B158DRAFT_1803 at 1902.556 kb on + strand, within B158DRAFT_1803 at 1902.556 kb on + strand, within B158DRAFT_1803 at 1902.564 kb on - strand, within B158DRAFT_1803 at 1902.568 kb on + strand, within B158DRAFT_1803 at 1902.606 kb on + strand, within B158DRAFT_1803 at 1902.653 kb on + strand, within B158DRAFT_1803 at 1902.661 kb on - strand, within B158DRAFT_1803 at 1902.661 kb on - strand, within B158DRAFT_1803 at 1902.661 kb on - strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.663 kb on + strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.671 kb on - strand, within B158DRAFT_1803 at 1902.712 kb on + strand, within B158DRAFT_1803 at 1902.712 kb on - strand, within B158DRAFT_1803 at 1902.720 kb on - strand, within B158DRAFT_1803 at 1902.753 kb on + strand at 1902.755 kb on + strand at 1902.763 kb on - strand at 1902.768 kb on - strand at 1902.787 kb on - strand at 1902.969 kb on + strand, within B158DRAFT_1804 at 1902.969 kb on + strand, within B158DRAFT_1804 at 1902.969 kb on + strand, within B158DRAFT_1804 at 1902.969 kb on + strand, within B158DRAFT_1804 at 1902.977 kb on - strand, within B158DRAFT_1804 at 1902.977 kb on - strand, within B158DRAFT_1804 at 1902.977 kb on - strand, within B158DRAFT_1804 at 1902.977 kb on - strand, within B158DRAFT_1804 at 1902.977 kb on - strand, within B158DRAFT_1804 at 1903.030 kb on + strand, within B158DRAFT_1804 at 1903.165 kb on + strand at 1903.165 kb on + strand at 1903.189 kb on + strand at 1903.189 kb on + strand at 1903.189 kb on + strand at 1903.189 kb on + strand at 1903.189 kb on + strand at 1903.189 kb on + strand at 1903.189 kb on + strand at 1903.189 kb on + strand at 1903.197 kb on - strand at 1903.197 kb on - strand at 1903.197 kb on - strand at 1903.197 kb on - strand at 1903.197 kb on - strand at 1903.197 kb on - strand at 1903.205 kb on + strand at 1903.406 kb on + strand at 1903.411 kb on + strand at 1903.411 kb on + strand at 1903.411 kb on + strand at 1903.568 kb on + strand, within B158DRAFT_1805 at 1903.721 kb on + strand, within B158DRAFT_1805 at 1903.764 kb on + strand, within B158DRAFT_1805
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,901,308 - B158DRAFT_1802 0.24 -0.1 1,901,442 + B158DRAFT_1802 0.36 +0.0 1,901,458 - B158DRAFT_1802 0.37 -1.8 1,901,532 + B158DRAFT_1802 0.43 +0.9 1,901,546 + B158DRAFT_1802 0.45 +0.8 1,901,621 - B158DRAFT_1802 0.51 -1.8 1,901,638 + B158DRAFT_1802 0.53 +0.4 1,901,646 + B158DRAFT_1802 0.53 +0.4 1,901,646 + B158DRAFT_1802 0.53 -0.4 1,901,646 - B158DRAFT_1802 0.53 -0.1 1,901,646 - B158DRAFT_1802 0.53 -2.0 1,901,654 - B158DRAFT_1802 0.54 +0.9 1,901,664 - B158DRAFT_1802 0.55 -0.8 1,901,689 - B158DRAFT_1802 0.57 +0.2 1,901,716 + B158DRAFT_1802 0.59 -0.8 1,901,716 + B158DRAFT_1802 0.59 +0.4 1,901,726 - B158DRAFT_1802 0.60 +0.6 1,901,728 + B158DRAFT_1802 0.61 +0.7 1,901,728 + B158DRAFT_1802 0.61 -1.1 1,901,728 + B158DRAFT_1802 0.61 -0.0 1,901,736 - B158DRAFT_1802 0.61 -1.1 1,901,736 - B158DRAFT_1802 0.61 -0.1 1,901,736 - B158DRAFT_1802 0.61 -1.5 1,901,736 - B158DRAFT_1802 0.61 -0.7 1,901,744 + B158DRAFT_1802 0.62 +1.0 1,901,744 + B158DRAFT_1802 0.62 -1.8 1,901,751 - B158DRAFT_1802 0.63 -0.9 1,901,863 + B158DRAFT_1802 0.72 -1.3 1,901,865 - B158DRAFT_1802 0.73 +1.0 1,901,876 + B158DRAFT_1802 0.73 -0.3 1,901,936 + B158DRAFT_1802 0.79 -0.8 1,901,941 + B158DRAFT_1802 0.79 -1.1 1,901,941 + B158DRAFT_1802 0.79 +0.3 1,901,941 + B158DRAFT_1802 0.79 -0.8 1,901,949 - B158DRAFT_1802 0.80 -0.5 1,901,999 + B158DRAFT_1802 0.84 -1.3 1,902,067 + +1.1 1,902,075 - +0.7 1,902,079 + +0.1 1,902,079 + -0.9 1,902,121 - +0.2 1,902,202 - +0.1 1,902,259 - +0.4 1,902,261 + -1.9 1,902,261 + -0.1 1,902,269 - -0.4 1,902,269 - -1.4 1,902,269 - -1.5 1,902,269 - +1.5 1,902,391 + B158DRAFT_1803 0.31 +2.6 1,902,402 + B158DRAFT_1803 0.33 -1.1 1,902,475 - B158DRAFT_1803 0.46 -0.6 1,902,489 + B158DRAFT_1803 0.48 +0.7 1,902,556 + B158DRAFT_1803 0.60 +1.4 1,902,556 + B158DRAFT_1803 0.60 -0.7 1,902,564 - B158DRAFT_1803 0.61 +0.0 1,902,568 + B158DRAFT_1803 0.62 +1.1 1,902,606 + B158DRAFT_1803 0.68 -0.6 1,902,653 + B158DRAFT_1803 0.77 -1.1 1,902,661 - B158DRAFT_1803 0.78 +0.6 1,902,661 - B158DRAFT_1803 0.78 -0.1 1,902,661 - B158DRAFT_1803 0.78 +1.1 1,902,663 + B158DRAFT_1803 0.78 -2.1 1,902,663 + B158DRAFT_1803 0.78 +1.8 1,902,663 + B158DRAFT_1803 0.78 +1.2 1,902,663 + B158DRAFT_1803 0.78 -1.6 1,902,663 + B158DRAFT_1803 0.78 -1.9 1,902,663 + B158DRAFT_1803 0.78 -0.7 1,902,663 + B158DRAFT_1803 0.78 -2.5 1,902,663 + B158DRAFT_1803 0.78 -0.1 1,902,663 + B158DRAFT_1803 0.78 -0.2 1,902,663 + B158DRAFT_1803 0.78 -0.7 1,902,663 + B158DRAFT_1803 0.78 -2.3 1,902,663 + B158DRAFT_1803 0.78 -2.1 1,902,663 + B158DRAFT_1803 0.78 +0.7 1,902,663 + B158DRAFT_1803 0.78 -0.4 1,902,663 + B158DRAFT_1803 0.78 -0.7 1,902,663 + B158DRAFT_1803 0.78 -1.2 1,902,663 + B158DRAFT_1803 0.78 -1.2 1,902,663 + B158DRAFT_1803 0.78 -0.4 1,902,663 + B158DRAFT_1803 0.78 -0.4 1,902,663 + B158DRAFT_1803 0.78 -0.2 1,902,663 + B158DRAFT_1803 0.78 +0.2 1,902,663 + B158DRAFT_1803 0.78 -1.6 1,902,671 - B158DRAFT_1803 0.80 -0.5 1,902,671 - B158DRAFT_1803 0.80 +0.1 1,902,671 - B158DRAFT_1803 0.80 -1.0 1,902,671 - B158DRAFT_1803 0.80 +6.1 1,902,671 - B158DRAFT_1803 0.80 -0.8 1,902,671 - B158DRAFT_1803 0.80 -1.3 1,902,671 - B158DRAFT_1803 0.80 -1.9 1,902,671 - B158DRAFT_1803 0.80 -0.5 1,902,671 - B158DRAFT_1803 0.80 +0.6 1,902,671 - B158DRAFT_1803 0.80 -2.7 1,902,671 - B158DRAFT_1803 0.80 +0.4 1,902,671 - B158DRAFT_1803 0.80 -0.4 1,902,671 - B158DRAFT_1803 0.80 -0.9 1,902,671 - B158DRAFT_1803 0.80 -0.8 1,902,671 - B158DRAFT_1803 0.80 -0.8 1,902,671 - B158DRAFT_1803 0.80 -1.6 1,902,671 - B158DRAFT_1803 0.80 -1.7 1,902,671 - B158DRAFT_1803 0.80 +0.4 1,902,671 - B158DRAFT_1803 0.80 -0.3 1,902,671 - B158DRAFT_1803 0.80 +0.6 1,902,671 - B158DRAFT_1803 0.80 -0.9 1,902,712 + B158DRAFT_1803 0.87 -2.3 1,902,712 - B158DRAFT_1803 0.87 -0.9 1,902,720 - B158DRAFT_1803 0.88 -2.4 1,902,753 + -1.4 1,902,755 + -1.5 1,902,763 - +0.3 1,902,768 - -0.6 1,902,787 - +1.4 1,902,969 + B158DRAFT_1804 0.58 +0.1 1,902,969 + B158DRAFT_1804 0.58 +0.8 1,902,969 + B158DRAFT_1804 0.58 +0.6 1,902,969 + B158DRAFT_1804 0.58 +2.4 1,902,977 - B158DRAFT_1804 0.62 +0.8 1,902,977 - B158DRAFT_1804 0.62 +0.4 1,902,977 - B158DRAFT_1804 0.62 +1.4 1,902,977 - B158DRAFT_1804 0.62 +0.5 1,902,977 - B158DRAFT_1804 0.62 -1.7 1,903,030 + B158DRAFT_1804 0.84 -0.9 1,903,165 + +0.1 1,903,165 + -0.2 1,903,189 + -0.1 1,903,189 + -0.9 1,903,189 + -1.1 1,903,189 + +1.2 1,903,189 + -0.1 1,903,189 + -0.9 1,903,189 + -0.8 1,903,189 + +0.9 1,903,197 - -0.3 1,903,197 - -0.3 1,903,197 - -0.7 1,903,197 - +0.9 1,903,197 - +0.1 1,903,197 - +1.7 1,903,205 + -1.2 1,903,406 + +4.9 1,903,411 + +4.9 1,903,411 + +4.3 1,903,411 + +2.8 1,903,568 + B158DRAFT_1805 0.14 +6.9 1,903,721 + B158DRAFT_1805 0.24 +8.2 1,903,764 + B158DRAFT_1805 0.27 +5.5
Or see this region's nucleotide sequence