Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1735 and B158DRAFT_1736 are separated by 120 nucleotides B158DRAFT_1736 and B158DRAFT_1737 are separated by 0 nucleotides B158DRAFT_1737 and B158DRAFT_1738 overlap by 4 nucleotides B158DRAFT_1738 and B158DRAFT_1739 overlap by 8 nucleotides
B158DRAFT_1735: B158DRAFT_1735 - Subtilisin-like serine proteases, at 1,811,742 to 1,814,204
_1735
B158DRAFT_1736: B158DRAFT_1736 - hypothetical protein, at 1,814,325 to 1,814,726
_1736
B158DRAFT_1737: B158DRAFT_1737 - two component transcriptional regulator, LuxR family, at 1,814,727 to 1,815,365
_1737
B158DRAFT_1738: B158DRAFT_1738 - Histidine kinase/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 1,815,362 to 1,816,105
_1738
B158DRAFT_1739: B158DRAFT_1739 - Protein kinase domain., at 1,816,098 to 1,819,463
_1739
Position (kb)
1814
1815
1816 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1813.739 kb on + strand, within B158DRAFT_1735 at 1813.777 kb on + strand, within B158DRAFT_1735 at 1813.831 kb on + strand, within B158DRAFT_1735 at 1813.833 kb on + strand, within B158DRAFT_1735 at 1813.841 kb on - strand, within B158DRAFT_1735 at 1813.846 kb on - strand, within B158DRAFT_1735 at 1813.878 kb on + strand, within B158DRAFT_1735 at 1813.878 kb on + strand, within B158DRAFT_1735 at 1813.878 kb on + strand, within B158DRAFT_1735 at 1813.886 kb on - strand, within B158DRAFT_1735 at 1813.886 kb on - strand, within B158DRAFT_1735 at 1813.886 kb on - strand, within B158DRAFT_1735 at 1813.886 kb on - strand, within B158DRAFT_1735 at 1813.886 kb on - strand, within B158DRAFT_1735 at 1813.962 kb on + strand at 1813.967 kb on + strand at 1813.985 kb on + strand at 1813.993 kb on - strand at 1814.001 kb on + strand at 1814.001 kb on + strand at 1814.036 kb on + strand at 1814.099 kb on + strand at 1814.107 kb on - strand at 1814.107 kb on - strand at 1814.142 kb on + strand at 1814.145 kb on - strand at 1814.229 kb on + strand at 1814.425 kb on + strand, within B158DRAFT_1736 at 1814.433 kb on + strand, within B158DRAFT_1736 at 1814.497 kb on + strand, within B158DRAFT_1736 at 1814.568 kb on + strand, within B158DRAFT_1736 at 1814.576 kb on - strand, within B158DRAFT_1736 at 1814.658 kb on + strand, within B158DRAFT_1736 at 1814.773 kb on + strand at 1814.909 kb on + strand, within B158DRAFT_1737 at 1814.995 kb on - strand, within B158DRAFT_1737 at 1814.999 kb on - strand, within B158DRAFT_1737 at 1815.181 kb on + strand, within B158DRAFT_1737 at 1815.204 kb on + strand, within B158DRAFT_1737 at 1815.252 kb on + strand, within B158DRAFT_1737 at 1815.283 kb on - strand, within B158DRAFT_1737 at 1815.312 kb on + strand at 1815.312 kb on + strand at 1815.350 kb on + strand at 1815.384 kb on + strand at 1815.384 kb on + strand at 1815.385 kb on - strand at 1815.392 kb on - strand at 1815.419 kb on + strand at 1815.419 kb on + strand at 1815.427 kb on - strand at 1815.427 kb on - strand at 1815.427 kb on - strand at 1815.427 kb on - strand at 1815.427 kb on - strand at 1815.430 kb on + strand at 1815.430 kb on + strand at 1815.437 kb on - strand, within B158DRAFT_1738 at 1815.455 kb on + strand, within B158DRAFT_1738 at 1815.490 kb on + strand, within B158DRAFT_1738 at 1815.498 kb on - strand, within B158DRAFT_1738 at 1815.498 kb on - strand, within B158DRAFT_1738 at 1815.498 kb on - strand, within B158DRAFT_1738 at 1815.498 kb on - strand, within B158DRAFT_1738 at 1815.498 kb on - strand, within B158DRAFT_1738 at 1815.516 kb on - strand, within B158DRAFT_1738 at 1815.523 kb on + strand, within B158DRAFT_1738 at 1815.524 kb on + strand, within B158DRAFT_1738 at 1815.537 kb on + strand, within B158DRAFT_1738 at 1815.537 kb on + strand, within B158DRAFT_1738 at 1815.545 kb on - strand, within B158DRAFT_1738 at 1815.545 kb on - strand, within B158DRAFT_1738 at 1815.581 kb on - strand, within B158DRAFT_1738 at 1815.648 kb on + strand, within B158DRAFT_1738 at 1815.703 kb on + strand, within B158DRAFT_1738 at 1815.839 kb on - strand, within B158DRAFT_1738 at 1815.851 kb on - strand, within B158DRAFT_1738 at 1815.851 kb on - strand, within B158DRAFT_1738 at 1815.867 kb on + strand, within B158DRAFT_1738 at 1815.875 kb on - strand, within B158DRAFT_1738 at 1815.926 kb on - strand, within B158DRAFT_1738 at 1815.926 kb on - strand, within B158DRAFT_1738 at 1815.936 kb on + strand, within B158DRAFT_1738 at 1815.946 kb on - strand, within B158DRAFT_1738 at 1815.992 kb on - strand, within B158DRAFT_1738 at 1816.111 kb on + strand at 1816.353 kb on + strand at 1816.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,813,739 + B158DRAFT_1735 0.81 -2.0 1,813,777 + B158DRAFT_1735 0.83 -1.1 1,813,831 + B158DRAFT_1735 0.85 -1.2 1,813,833 + B158DRAFT_1735 0.85 -1.1 1,813,841 - B158DRAFT_1735 0.85 -1.6 1,813,846 - B158DRAFT_1735 0.85 +1.3 1,813,878 + B158DRAFT_1735 0.87 +0.2 1,813,878 + B158DRAFT_1735 0.87 -0.8 1,813,878 + B158DRAFT_1735 0.87 -0.8 1,813,886 - B158DRAFT_1735 0.87 -1.5 1,813,886 - B158DRAFT_1735 0.87 -0.5 1,813,886 - B158DRAFT_1735 0.87 +0.9 1,813,886 - B158DRAFT_1735 0.87 -1.5 1,813,886 - B158DRAFT_1735 0.87 -0.0 1,813,962 + -1.1 1,813,967 + -0.8 1,813,985 + -1.6 1,813,993 - +2.4 1,814,001 + -1.3 1,814,001 + -0.7 1,814,036 + +0.3 1,814,099 + -0.0 1,814,107 - -1.7 1,814,107 - +0.1 1,814,142 + -0.8 1,814,145 - -1.0 1,814,229 + -0.8 1,814,425 + B158DRAFT_1736 0.25 -0.4 1,814,433 + B158DRAFT_1736 0.27 -0.8 1,814,497 + B158DRAFT_1736 0.43 -0.3 1,814,568 + B158DRAFT_1736 0.60 -0.4 1,814,576 - B158DRAFT_1736 0.62 -1.2 1,814,658 + B158DRAFT_1736 0.83 -0.9 1,814,773 + +1.0 1,814,909 + B158DRAFT_1737 0.28 -0.3 1,814,995 - B158DRAFT_1737 0.42 -0.2 1,814,999 - B158DRAFT_1737 0.43 +0.3 1,815,181 + B158DRAFT_1737 0.71 -1.1 1,815,204 + B158DRAFT_1737 0.75 -0.4 1,815,252 + B158DRAFT_1737 0.82 -0.1 1,815,283 - B158DRAFT_1737 0.87 -1.0 1,815,312 + -1.7 1,815,312 + -1.2 1,815,350 + -0.8 1,815,384 + -1.9 1,815,384 + -1.1 1,815,385 - -0.6 1,815,392 - +0.3 1,815,419 + +1.3 1,815,419 + -2.2 1,815,427 - -0.7 1,815,427 - -0.9 1,815,427 - -0.4 1,815,427 - -0.8 1,815,427 - -0.1 1,815,430 + +0.4 1,815,430 + -0.4 1,815,437 - B158DRAFT_1738 0.10 -1.0 1,815,455 + B158DRAFT_1738 0.12 -1.1 1,815,490 + B158DRAFT_1738 0.17 -1.5 1,815,498 - B158DRAFT_1738 0.18 -1.5 1,815,498 - B158DRAFT_1738 0.18 -0.5 1,815,498 - B158DRAFT_1738 0.18 -0.3 1,815,498 - B158DRAFT_1738 0.18 -1.3 1,815,498 - B158DRAFT_1738 0.18 +0.2 1,815,516 - B158DRAFT_1738 0.21 +0.2 1,815,523 + B158DRAFT_1738 0.22 -0.2 1,815,524 + B158DRAFT_1738 0.22 -2.3 1,815,537 + B158DRAFT_1738 0.24 -0.5 1,815,537 + B158DRAFT_1738 0.24 -1.8 1,815,545 - B158DRAFT_1738 0.25 +0.5 1,815,545 - B158DRAFT_1738 0.25 +1.1 1,815,581 - B158DRAFT_1738 0.29 -1.2 1,815,648 + B158DRAFT_1738 0.38 -0.3 1,815,703 + B158DRAFT_1738 0.46 +0.9 1,815,839 - B158DRAFT_1738 0.64 -2.9 1,815,851 - B158DRAFT_1738 0.66 -0.4 1,815,851 - B158DRAFT_1738 0.66 +0.9 1,815,867 + B158DRAFT_1738 0.68 +0.3 1,815,875 - B158DRAFT_1738 0.69 +0.6 1,815,926 - B158DRAFT_1738 0.76 -0.9 1,815,926 - B158DRAFT_1738 0.76 -2.1 1,815,936 + B158DRAFT_1738 0.77 -0.8 1,815,946 - B158DRAFT_1738 0.78 -0.1 1,815,992 - B158DRAFT_1738 0.85 -0.8 1,816,111 + +1.9 1,816,353 + -1.5 1,816,360 - +0.2
Or see this region's nucleotide sequence