Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1543 and B158DRAFT_1544 are separated by 162 nucleotides B158DRAFT_1544 and B158DRAFT_1546 are separated by 308 nucleotides B158DRAFT_1546 and B158DRAFT_1547 are separated by 301 nucleotides
B158DRAFT_1543: B158DRAFT_1543 - Multidrug resistance efflux pump, at 1,599,341 to 1,600,543
_1543
B158DRAFT_1544: B158DRAFT_1544 - tRNA_Arg_ACG, at 1,600,706 to 1,600,782
_1544
B158DRAFT_1546: B158DRAFT_1546 - hypothetical protein, at 1,601,091 to 1,601,315
_1546
B158DRAFT_1547: B158DRAFT_1547 - hypothetical protein, at 1,601,617 to 1,602,090
_1547
Position (kb)
1600
1601 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1599.757 kb on + strand, within B158DRAFT_1543 at 1599.799 kb on + strand, within B158DRAFT_1543 at 1599.881 kb on + strand, within B158DRAFT_1543 at 1599.889 kb on - strand, within B158DRAFT_1543 at 1599.891 kb on - strand, within B158DRAFT_1543 at 1599.893 kb on + strand, within B158DRAFT_1543 at 1599.939 kb on - strand, within B158DRAFT_1543 at 1599.956 kb on - strand, within B158DRAFT_1543 at 1599.977 kb on + strand, within B158DRAFT_1543 at 1599.985 kb on - strand, within B158DRAFT_1543 at 1599.991 kb on - strand, within B158DRAFT_1543 at 1599.999 kb on + strand, within B158DRAFT_1543 at 1600.009 kb on + strand, within B158DRAFT_1543 at 1600.009 kb on + strand, within B158DRAFT_1543 at 1600.009 kb on + strand, within B158DRAFT_1543 at 1600.017 kb on - strand, within B158DRAFT_1543 at 1600.017 kb on - strand, within B158DRAFT_1543 at 1600.127 kb on + strand, within B158DRAFT_1543 at 1600.145 kb on + strand, within B158DRAFT_1543 at 1600.172 kb on - strand, within B158DRAFT_1543 at 1600.199 kb on + strand, within B158DRAFT_1543 at 1600.229 kb on - strand, within B158DRAFT_1543 at 1600.229 kb on - strand, within B158DRAFT_1543 at 1600.238 kb on + strand, within B158DRAFT_1543 at 1600.248 kb on + strand, within B158DRAFT_1543 at 1600.248 kb on + strand, within B158DRAFT_1543 at 1600.250 kb on + strand, within B158DRAFT_1543 at 1600.256 kb on - strand, within B158DRAFT_1543 at 1600.256 kb on - strand, within B158DRAFT_1543 at 1600.321 kb on - strand, within B158DRAFT_1543 at 1600.334 kb on - strand, within B158DRAFT_1543 at 1600.385 kb on + strand, within B158DRAFT_1543 at 1600.391 kb on - strand, within B158DRAFT_1543 at 1600.391 kb on - strand, within B158DRAFT_1543 at 1600.391 kb on - strand, within B158DRAFT_1543 at 1600.393 kb on - strand, within B158DRAFT_1543 at 1600.411 kb on - strand, within B158DRAFT_1543 at 1600.413 kb on + strand, within B158DRAFT_1543 at 1600.420 kb on + strand, within B158DRAFT_1543 at 1600.421 kb on - strand, within B158DRAFT_1543 at 1600.421 kb on - strand, within B158DRAFT_1543 at 1600.461 kb on + strand at 1600.461 kb on + strand at 1600.469 kb on - strand at 1600.833 kb on + strand at 1600.840 kb on - strand at 1601.009 kb on - strand at 1601.009 kb on - strand at 1601.057 kb on - strand at 1601.067 kb on - strand at 1601.087 kb on - strand at 1601.283 kb on - strand, within B158DRAFT_1546 at 1601.338 kb on + strand at 1601.340 kb on - strand at 1601.415 kb on - strand at 1601.419 kb on + strand at 1601.419 kb on + strand at 1601.419 kb on + strand at 1601.419 kb on + strand at 1601.427 kb on - strand at 1601.454 kb on + strand at 1601.462 kb on - strand at 1601.564 kb on + strand at 1601.564 kb on + strand at 1601.564 kb on + strand at 1601.571 kb on + strand at 1601.572 kb on - strand at 1601.572 kb on - strand at 1601.589 kb on - strand at 1601.658 kb on + strand at 1601.666 kb on - strand, within B158DRAFT_1547 at 1601.677 kb on + strand, within B158DRAFT_1547 at 1601.677 kb on + strand, within B158DRAFT_1547 at 1601.677 kb on + strand, within B158DRAFT_1547 at 1601.685 kb on - strand, within B158DRAFT_1547 at 1601.685 kb on - strand, within B158DRAFT_1547
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,599,757 + B158DRAFT_1543 0.35 -1.7 1,599,799 + B158DRAFT_1543 0.38 -1.7 1,599,881 + B158DRAFT_1543 0.45 -1.0 1,599,889 - B158DRAFT_1543 0.46 -2.4 1,599,891 - B158DRAFT_1543 0.46 +0.8 1,599,893 + B158DRAFT_1543 0.46 +1.1 1,599,939 - B158DRAFT_1543 0.50 +0.1 1,599,956 - B158DRAFT_1543 0.51 -1.0 1,599,977 + B158DRAFT_1543 0.53 +0.1 1,599,985 - B158DRAFT_1543 0.54 -0.1 1,599,991 - B158DRAFT_1543 0.54 +0.1 1,599,999 + B158DRAFT_1543 0.55 -0.0 1,600,009 + B158DRAFT_1543 0.56 -0.4 1,600,009 + B158DRAFT_1543 0.56 -0.9 1,600,009 + B158DRAFT_1543 0.56 -1.6 1,600,017 - B158DRAFT_1543 0.56 -0.1 1,600,017 - B158DRAFT_1543 0.56 +0.9 1,600,127 + B158DRAFT_1543 0.65 +0.0 1,600,145 + B158DRAFT_1543 0.67 +0.6 1,600,172 - B158DRAFT_1543 0.69 -0.4 1,600,199 + B158DRAFT_1543 0.71 +5.2 1,600,229 - B158DRAFT_1543 0.74 +1.7 1,600,229 - B158DRAFT_1543 0.74 -0.5 1,600,238 + B158DRAFT_1543 0.75 -1.2 1,600,248 + B158DRAFT_1543 0.75 +0.2 1,600,248 + B158DRAFT_1543 0.75 +1.2 1,600,250 + B158DRAFT_1543 0.76 -0.8 1,600,256 - B158DRAFT_1543 0.76 -0.6 1,600,256 - B158DRAFT_1543 0.76 +0.2 1,600,321 - B158DRAFT_1543 0.81 -1.1 1,600,334 - B158DRAFT_1543 0.83 -0.5 1,600,385 + B158DRAFT_1543 0.87 -1.5 1,600,391 - B158DRAFT_1543 0.87 +1.1 1,600,391 - B158DRAFT_1543 0.87 +0.1 1,600,391 - B158DRAFT_1543 0.87 +1.2 1,600,393 - B158DRAFT_1543 0.87 -1.2 1,600,411 - B158DRAFT_1543 0.89 -1.3 1,600,413 + B158DRAFT_1543 0.89 -0.4 1,600,420 + B158DRAFT_1543 0.90 -1.2 1,600,421 - B158DRAFT_1543 0.90 -1.4 1,600,421 - B158DRAFT_1543 0.90 +0.2 1,600,461 + -2.2 1,600,461 + +1.4 1,600,469 - -0.8 1,600,833 + -0.9 1,600,840 - -1.2 1,601,009 - -1.1 1,601,009 - -1.7 1,601,057 - +0.3 1,601,067 - -0.3 1,601,087 - -0.9 1,601,283 - B158DRAFT_1546 0.85 -0.9 1,601,338 + +0.2 1,601,340 - +0.2 1,601,415 - -0.3 1,601,419 + +0.3 1,601,419 + +1.2 1,601,419 + -1.2 1,601,419 + -1.0 1,601,427 - -0.4 1,601,454 + -0.1 1,601,462 - +1.7 1,601,564 + -1.4 1,601,564 + -1.9 1,601,564 + -0.4 1,601,571 + -2.7 1,601,572 - -1.3 1,601,572 - -0.7 1,601,589 - -0.4 1,601,658 + -0.6 1,601,666 - B158DRAFT_1547 0.10 +1.2 1,601,677 + B158DRAFT_1547 0.13 -0.8 1,601,677 + B158DRAFT_1547 0.13 -0.3 1,601,677 + B158DRAFT_1547 0.13 -0.9 1,601,685 - B158DRAFT_1547 0.14 -0.5 1,601,685 - B158DRAFT_1547 0.14 -0.7
Or see this region's nucleotide sequence