Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1421

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1419 and B158DRAFT_1420 are separated by 338 nucleotidesB158DRAFT_1420 and B158DRAFT_1421 overlap by 10 nucleotidesB158DRAFT_1421 and B158DRAFT_1422 are separated by 3 nucleotides B158DRAFT_1419: B158DRAFT_1419 - citrate synthase (EC 2.3.3.1), at 1,465,252 to 1,466,541 _1419 B158DRAFT_1420: B158DRAFT_1420 - succinate dehydrogenase subunit C (EC 1.3.5.1), at 1,466,880 to 1,467,257 _1420 B158DRAFT_1421: B158DRAFT_1421 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,467,248 to 1,467,601 _1421 B158DRAFT_1422: B158DRAFT_1422 - succinate dehydrogenase subunit A (EC 1.3.5.1), at 1,467,605 to 1,469,383 _1422 Position (kb) 1467 1468Strain fitness (log2 ratio) -1 0 1 2 3 4at 1466.252 kb on - strand, within B158DRAFT_1419at 1466.314 kb on + strand, within B158DRAFT_1419at 1466.316 kb on + strand, within B158DRAFT_1419at 1466.316 kb on + strand, within B158DRAFT_1419at 1466.316 kb on + strand, within B158DRAFT_1419at 1466.324 kb on - strand, within B158DRAFT_1419at 1466.324 kb on - strand, within B158DRAFT_1419at 1466.499 kb on - strandat 1466.549 kb on + strandat 1466.598 kb on - strandat 1466.600 kb on + strandat 1466.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,466,252 - B158DRAFT_1419 0.78 +2.8
1,466,314 + B158DRAFT_1419 0.82 +3.5
1,466,316 + B158DRAFT_1419 0.82 +3.0
1,466,316 + B158DRAFT_1419 0.82 +3.1
1,466,316 + B158DRAFT_1419 0.82 +3.2
1,466,324 - B158DRAFT_1419 0.83 +3.1
1,466,324 - B158DRAFT_1419 0.83 +2.6
1,466,499 - +4.1
1,466,549 + +2.5
1,466,598 - +2.4
1,466,600 + +3.0
1,466,610 - +2.7

Or see this region's nucleotide sequence