Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1417

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1414 and B158DRAFT_1415 are separated by 58 nucleotidesB158DRAFT_1415 and B158DRAFT_1416 are separated by 104 nucleotidesB158DRAFT_1416 and B158DRAFT_1417 are separated by 7 nucleotidesB158DRAFT_1417 and B158DRAFT_1418 are separated by 66 nucleotides B158DRAFT_1414: B158DRAFT_1414 - asparaginyl-tRNA synthetase (EC 6.1.1.22), at 1,461,147 to 1,462,544 _1414 B158DRAFT_1415: B158DRAFT_1415 - Predicted Fe-S protein, at 1,462,603 to 1,462,878 _1415 B158DRAFT_1416: B158DRAFT_1416 - GAF domain-containing protein, at 1,462,983 to 1,463,498 _1416 B158DRAFT_1417: B158DRAFT_1417 - Predicted dioxygenase of extradiol dioxygenase family, at 1,463,506 to 1,463,931 _1417 B158DRAFT_1418: B158DRAFT_1418 - Tryptophan 2,3-dioxygenase (vermilion), at 1,463,998 to 1,465,077 _1418 Position (kb) 1463 1464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1462.742 kb on - strand, within B158DRAFT_1415at 1462.754 kb on - strand, within B158DRAFT_1415at 1462.754 kb on - strand, within B158DRAFT_1415at 1462.754 kb on - strand, within B158DRAFT_1415at 1462.782 kb on - strand, within B158DRAFT_1415at 1462.782 kb on - strand, within B158DRAFT_1415at 1462.782 kb on - strand, within B158DRAFT_1415at 1462.782 kb on - strand, within B158DRAFT_1415at 1462.782 kb on - strand, within B158DRAFT_1415at 1462.782 kb on - strand, within B158DRAFT_1415at 1462.782 kb on - strand, within B158DRAFT_1415at 1462.949 kb on + strandat 1462.987 kb on - strandat 1463.031 kb on + strandat 1463.152 kb on + strand, within B158DRAFT_1416at 1463.152 kb on + strand, within B158DRAFT_1416at 1463.152 kb on + strand, within B158DRAFT_1416at 1463.157 kb on + strand, within B158DRAFT_1416at 1463.160 kb on - strand, within B158DRAFT_1416at 1463.160 kb on - strand, within B158DRAFT_1416at 1463.166 kb on - strand, within B158DRAFT_1416at 1463.168 kb on + strand, within B158DRAFT_1416at 1463.168 kb on + strand, within B158DRAFT_1416at 1463.168 kb on + strand, within B158DRAFT_1416at 1463.168 kb on + strand, within B158DRAFT_1416at 1463.168 kb on + strand, within B158DRAFT_1416at 1463.168 kb on + strand, within B158DRAFT_1416at 1463.176 kb on - strand, within B158DRAFT_1416at 1463.176 kb on - strand, within B158DRAFT_1416at 1463.176 kb on - strand, within B158DRAFT_1416at 1463.176 kb on - strand, within B158DRAFT_1416at 1463.176 kb on - strand, within B158DRAFT_1416at 1463.199 kb on - strand, within B158DRAFT_1416at 1463.208 kb on + strand, within B158DRAFT_1416at 1463.216 kb on - strand, within B158DRAFT_1416at 1463.253 kb on - strand, within B158DRAFT_1416at 1463.345 kb on + strand, within B158DRAFT_1416at 1463.353 kb on - strand, within B158DRAFT_1416at 1463.367 kb on - strand, within B158DRAFT_1416at 1463.389 kb on - strand, within B158DRAFT_1416at 1463.399 kb on - strand, within B158DRAFT_1416at 1463.409 kb on - strand, within B158DRAFT_1416at 1463.432 kb on + strand, within B158DRAFT_1416at 1463.518 kb on - strandat 1463.546 kb on + strandat 1463.546 kb on + strandat 1463.546 kb on + strandat 1463.546 kb on + strandat 1463.554 kb on - strand, within B158DRAFT_1417at 1463.554 kb on - strand, within B158DRAFT_1417at 1463.556 kb on + strand, within B158DRAFT_1417at 1463.564 kb on - strand, within B158DRAFT_1417at 1463.573 kb on - strand, within B158DRAFT_1417at 1463.577 kb on + strand, within B158DRAFT_1417at 1463.604 kb on - strand, within B158DRAFT_1417at 1463.604 kb on - strand, within B158DRAFT_1417at 1463.610 kb on + strand, within B158DRAFT_1417at 1463.610 kb on + strand, within B158DRAFT_1417at 1463.618 kb on - strand, within B158DRAFT_1417at 1463.618 kb on - strand, within B158DRAFT_1417at 1463.664 kb on + strand, within B158DRAFT_1417at 1463.664 kb on + strand, within B158DRAFT_1417at 1463.672 kb on + strand, within B158DRAFT_1417at 1463.672 kb on - strand, within B158DRAFT_1417at 1463.672 kb on - strand, within B158DRAFT_1417at 1463.690 kb on - strand, within B158DRAFT_1417at 1463.690 kb on - strand, within B158DRAFT_1417at 1463.740 kb on + strand, within B158DRAFT_1417at 1463.748 kb on - strand, within B158DRAFT_1417at 1463.748 kb on - strand, within B158DRAFT_1417at 1463.748 kb on - strand, within B158DRAFT_1417at 1463.749 kb on + strand, within B158DRAFT_1417at 1463.763 kb on + strand, within B158DRAFT_1417at 1463.763 kb on + strand, within B158DRAFT_1417at 1463.777 kb on + strand, within B158DRAFT_1417at 1463.777 kb on + strand, within B158DRAFT_1417at 1463.785 kb on + strand, within B158DRAFT_1417at 1463.785 kb on - strand, within B158DRAFT_1417at 1463.785 kb on - strand, within B158DRAFT_1417at 1463.793 kb on - strand, within B158DRAFT_1417at 1463.820 kb on - strand, within B158DRAFT_1417at 1463.830 kb on + strand, within B158DRAFT_1417at 1463.830 kb on + strand, within B158DRAFT_1417at 1463.838 kb on - strand, within B158DRAFT_1417at 1463.842 kb on + strand, within B158DRAFT_1417at 1463.850 kb on - strand, within B158DRAFT_1417at 1463.906 kb on + strandat 1463.914 kb on - strandat 1463.955 kb on + strandat 1463.985 kb on - strandat 1464.100 kb on + strandat 1464.100 kb on + strandat 1464.108 kb on - strand, within B158DRAFT_1418at 1464.108 kb on - strand, within B158DRAFT_1418at 1464.108 kb on - strand, within B158DRAFT_1418at 1464.108 kb on - strand, within B158DRAFT_1418at 1464.124 kb on + strand, within B158DRAFT_1418at 1464.132 kb on + strand, within B158DRAFT_1418at 1464.132 kb on - strand, within B158DRAFT_1418at 1464.132 kb on - strand, within B158DRAFT_1418at 1464.154 kb on - strand, within B158DRAFT_1418at 1464.175 kb on + strand, within B158DRAFT_1418at 1464.185 kb on - strand, within B158DRAFT_1418at 1464.211 kb on - strand, within B158DRAFT_1418at 1464.213 kb on - strand, within B158DRAFT_1418at 1464.221 kb on + strand, within B158DRAFT_1418at 1464.242 kb on + strand, within B158DRAFT_1418at 1464.245 kb on - strand, within B158DRAFT_1418at 1464.254 kb on + strand, within B158DRAFT_1418at 1464.262 kb on - strand, within B158DRAFT_1418at 1464.262 kb on - strand, within B158DRAFT_1418at 1464.264 kb on - strand, within B158DRAFT_1418at 1464.270 kb on + strand, within B158DRAFT_1418at 1464.283 kb on - strand, within B158DRAFT_1418at 1464.301 kb on + strand, within B158DRAFT_1418at 1464.338 kb on + strand, within B158DRAFT_1418at 1464.338 kb on + strand, within B158DRAFT_1418at 1464.346 kb on - strand, within B158DRAFT_1418at 1464.346 kb on - strand, within B158DRAFT_1418at 1464.376 kb on + strand, within B158DRAFT_1418at 1464.489 kb on - strand, within B158DRAFT_1418at 1464.535 kb on - strand, within B158DRAFT_1418at 1464.539 kb on + strand, within B158DRAFT_1418at 1464.580 kb on + strand, within B158DRAFT_1418at 1464.677 kb on + strand, within B158DRAFT_1418at 1464.856 kb on - strand, within B158DRAFT_1418at 1464.915 kb on + strand, within B158DRAFT_1418at 1464.921 kb on + strand, within B158DRAFT_1418

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,462,742 - B158DRAFT_1415 0.50 +0.7
1,462,754 - B158DRAFT_1415 0.55 -0.8
1,462,754 - B158DRAFT_1415 0.55 -0.5
1,462,754 - B158DRAFT_1415 0.55 -1.7
1,462,782 - B158DRAFT_1415 0.65 -0.2
1,462,782 - B158DRAFT_1415 0.65 +0.4
1,462,782 - B158DRAFT_1415 0.65 +1.7
1,462,782 - B158DRAFT_1415 0.65 -0.2
1,462,782 - B158DRAFT_1415 0.65 -0.7
1,462,782 - B158DRAFT_1415 0.65 +2.3
1,462,782 - B158DRAFT_1415 0.65 -0.6
1,462,949 + +0.4
1,462,987 - -0.9
1,463,031 + -0.0
1,463,152 + B158DRAFT_1416 0.33 +1.9
1,463,152 + B158DRAFT_1416 0.33 -1.1
1,463,152 + B158DRAFT_1416 0.33 +0.2
1,463,157 + B158DRAFT_1416 0.34 -3.3
1,463,160 - B158DRAFT_1416 0.34 -1.7
1,463,160 - B158DRAFT_1416 0.34 -1.0
1,463,166 - B158DRAFT_1416 0.35 -0.5
1,463,168 + B158DRAFT_1416 0.36 +1.1
1,463,168 + B158DRAFT_1416 0.36 +1.1
1,463,168 + B158DRAFT_1416 0.36 -0.8
1,463,168 + B158DRAFT_1416 0.36 -1.4
1,463,168 + B158DRAFT_1416 0.36 -0.5
1,463,168 + B158DRAFT_1416 0.36 -0.1
1,463,176 - B158DRAFT_1416 0.37 -2.6
1,463,176 - B158DRAFT_1416 0.37 +0.5
1,463,176 - B158DRAFT_1416 0.37 -0.8
1,463,176 - B158DRAFT_1416 0.37 -1.0
1,463,176 - B158DRAFT_1416 0.37 -0.3
1,463,199 - B158DRAFT_1416 0.42 -0.2
1,463,208 + B158DRAFT_1416 0.44 -0.3
1,463,216 - B158DRAFT_1416 0.45 -1.3
1,463,253 - B158DRAFT_1416 0.52 -1.7
1,463,345 + B158DRAFT_1416 0.70 +1.9
1,463,353 - B158DRAFT_1416 0.72 -0.7
1,463,367 - B158DRAFT_1416 0.74 +0.4
1,463,389 - B158DRAFT_1416 0.79 +1.1
1,463,399 - B158DRAFT_1416 0.81 +1.1
1,463,409 - B158DRAFT_1416 0.83 +2.8
1,463,432 + B158DRAFT_1416 0.87 -0.4
1,463,518 - -0.3
1,463,546 + -0.4
1,463,546 + -0.8
1,463,546 + -0.7
1,463,546 + -2.5
1,463,554 - B158DRAFT_1417 0.11 -1.1
1,463,554 - B158DRAFT_1417 0.11 -0.1
1,463,556 + B158DRAFT_1417 0.12 +0.3
1,463,564 - B158DRAFT_1417 0.14 -0.7
1,463,573 - B158DRAFT_1417 0.16 -0.6
1,463,577 + B158DRAFT_1417 0.17 -1.1
1,463,604 - B158DRAFT_1417 0.23 +4.2
1,463,604 - B158DRAFT_1417 0.23 -0.6
1,463,610 + B158DRAFT_1417 0.24 +0.8
1,463,610 + B158DRAFT_1417 0.24 +0.6
1,463,618 - B158DRAFT_1417 0.26 -0.9
1,463,618 - B158DRAFT_1417 0.26 -0.7
1,463,664 + B158DRAFT_1417 0.37 -0.9
1,463,664 + B158DRAFT_1417 0.37 +0.6
1,463,672 + B158DRAFT_1417 0.39 -1.6
1,463,672 - B158DRAFT_1417 0.39 -0.4
1,463,672 - B158DRAFT_1417 0.39 -1.8
1,463,690 - B158DRAFT_1417 0.43 +2.7
1,463,690 - B158DRAFT_1417 0.43 -0.9
1,463,740 + B158DRAFT_1417 0.55 +0.3
1,463,748 - B158DRAFT_1417 0.57 -1.6
1,463,748 - B158DRAFT_1417 0.57 +1.3
1,463,748 - B158DRAFT_1417 0.57 -1.3
1,463,749 + B158DRAFT_1417 0.57 -0.2
1,463,763 + B158DRAFT_1417 0.60 +0.4
1,463,763 + B158DRAFT_1417 0.60 -1.7
1,463,777 + B158DRAFT_1417 0.64 +0.0
1,463,777 + B158DRAFT_1417 0.64 -1.0
1,463,785 + B158DRAFT_1417 0.65 -0.1
1,463,785 - B158DRAFT_1417 0.65 -0.3
1,463,785 - B158DRAFT_1417 0.65 -1.6
1,463,793 - B158DRAFT_1417 0.67 -0.4
1,463,820 - B158DRAFT_1417 0.74 -1.1
1,463,830 + B158DRAFT_1417 0.76 +0.3
1,463,830 + B158DRAFT_1417 0.76 -0.4
1,463,838 - B158DRAFT_1417 0.78 +0.2
1,463,842 + B158DRAFT_1417 0.79 +1.7
1,463,850 - B158DRAFT_1417 0.81 +0.0
1,463,906 + -0.4
1,463,914 - -1.9
1,463,955 + -0.4
1,463,985 - -0.2
1,464,100 + -1.3
1,464,100 + +1.8
1,464,108 - B158DRAFT_1418 0.10 -0.1
1,464,108 - B158DRAFT_1418 0.10 -1.3
1,464,108 - B158DRAFT_1418 0.10 +6.4
1,464,108 - B158DRAFT_1418 0.10 -0.5
1,464,124 + B158DRAFT_1418 0.12 -0.3
1,464,132 + B158DRAFT_1418 0.12 -1.2
1,464,132 - B158DRAFT_1418 0.12 -0.7
1,464,132 - B158DRAFT_1418 0.12 -1.0
1,464,154 - B158DRAFT_1418 0.14 -0.5
1,464,175 + B158DRAFT_1418 0.16 -0.2
1,464,185 - B158DRAFT_1418 0.17 -1.1
1,464,211 - B158DRAFT_1418 0.20 +3.0
1,464,213 - B158DRAFT_1418 0.20 +2.7
1,464,221 + B158DRAFT_1418 0.21 -1.0
1,464,242 + B158DRAFT_1418 0.23 +1.2
1,464,245 - B158DRAFT_1418 0.23 -0.5
1,464,254 + B158DRAFT_1418 0.24 +0.2
1,464,262 - B158DRAFT_1418 0.24 -0.8
1,464,262 - B158DRAFT_1418 0.24 -1.8
1,464,264 - B158DRAFT_1418 0.25 -3.1
1,464,270 + B158DRAFT_1418 0.25 -0.9
1,464,283 - B158DRAFT_1418 0.26 -0.6
1,464,301 + B158DRAFT_1418 0.28 -0.8
1,464,338 + B158DRAFT_1418 0.31 -0.9
1,464,338 + B158DRAFT_1418 0.31 -0.6
1,464,346 - B158DRAFT_1418 0.32 +0.4
1,464,346 - B158DRAFT_1418 0.32 -2.0
1,464,376 + B158DRAFT_1418 0.35 -0.6
1,464,489 - B158DRAFT_1418 0.45 +0.9
1,464,535 - B158DRAFT_1418 0.50 -1.5
1,464,539 + B158DRAFT_1418 0.50 -0.2
1,464,580 + B158DRAFT_1418 0.54 +0.3
1,464,677 + B158DRAFT_1418 0.63 -1.4
1,464,856 - B158DRAFT_1418 0.79 +0.3
1,464,915 + B158DRAFT_1418 0.85 -0.6
1,464,921 + B158DRAFT_1418 0.85 +1.4

Or see this region's nucleotide sequence