Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1345 and B158DRAFT_1346 are separated by 60 nucleotides B158DRAFT_1346 and B158DRAFT_1347 are separated by 43 nucleotides
B158DRAFT_1345: B158DRAFT_1345 - aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent, at 1,388,535 to 1,391,123
_1345
B158DRAFT_1346: B158DRAFT_1346 - 2-methylaconitate cis-trans isomerase, at 1,391,184 to 1,392,398
_1346
B158DRAFT_1347: B158DRAFT_1347 - hypothetical protein, at 1,392,442 to 1,393,545
_1347
Position (kb) 1391
1392
1393 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1390.453 kb on - strand, within B158DRAFT_1345 at 1390.568 kb on + strand, within B158DRAFT_1345 at 1390.568 kb on + strand, within B158DRAFT_1345 at 1390.576 kb on - strand, within B158DRAFT_1345 at 1390.764 kb on + strand, within B158DRAFT_1345 at 1390.764 kb on + strand, within B158DRAFT_1345 at 1391.210 kb on - strand at 1391.217 kb on + strand at 1391.222 kb on + strand at 1391.306 kb on + strand, within B158DRAFT_1346 at 1391.353 kb on + strand, within B158DRAFT_1346 at 1391.361 kb on - strand, within B158DRAFT_1346 at 1391.777 kb on + strand, within B158DRAFT_1346 at 1391.890 kb on + strand, within B158DRAFT_1346 at 1392.112 kb on + strand, within B158DRAFT_1346 at 1392.587 kb on - strand, within B158DRAFT_1347 at 1392.594 kb on + strand, within B158DRAFT_1347 at 1392.660 kb on - strand, within B158DRAFT_1347 at 1392.726 kb on + strand, within B158DRAFT_1347 at 1392.920 kb on + strand, within B158DRAFT_1347 at 1392.948 kb on - strand, within B158DRAFT_1347 at 1393.063 kb on - strand, within B158DRAFT_1347 at 1393.153 kb on - strand, within B158DRAFT_1347 at 1393.153 kb on - strand, within B158DRAFT_1347 at 1393.155 kb on + strand, within B158DRAFT_1347 at 1393.155 kb on + strand, within B158DRAFT_1347 at 1393.155 kb on + strand, within B158DRAFT_1347 at 1393.160 kb on + strand, within B158DRAFT_1347 at 1393.168 kb on - strand, within B158DRAFT_1347 at 1393.168 kb on - strand, within B158DRAFT_1347 at 1393.382 kb on + strand, within B158DRAFT_1347
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,390,453 - B158DRAFT_1345 0.74 +2.9 1,390,568 + B158DRAFT_1345 0.79 +3.0 1,390,568 + B158DRAFT_1345 0.79 +1.7 1,390,576 - B158DRAFT_1345 0.79 +1.5 1,390,764 + B158DRAFT_1345 0.86 +2.9 1,390,764 + B158DRAFT_1345 0.86 +2.1 1,391,210 - +2.3 1,391,217 + +2.3 1,391,222 + -2.0 1,391,306 + B158DRAFT_1346 0.10 +2.0 1,391,353 + B158DRAFT_1346 0.14 +1.3 1,391,361 - B158DRAFT_1346 0.15 +2.9 1,391,777 + B158DRAFT_1346 0.49 +1.2 1,391,890 + B158DRAFT_1346 0.58 +1.5 1,392,112 + B158DRAFT_1346 0.76 +1.5 1,392,587 - B158DRAFT_1347 0.13 -0.7 1,392,594 + B158DRAFT_1347 0.14 -0.1 1,392,660 - B158DRAFT_1347 0.20 -1.6 1,392,726 + B158DRAFT_1347 0.26 +0.3 1,392,920 + B158DRAFT_1347 0.43 +0.8 1,392,948 - B158DRAFT_1347 0.46 +2.7 1,393,063 - B158DRAFT_1347 0.56 -0.9 1,393,153 - B158DRAFT_1347 0.64 -0.9 1,393,153 - B158DRAFT_1347 0.64 -2.1 1,393,155 + B158DRAFT_1347 0.65 -1.5 1,393,155 + B158DRAFT_1347 0.65 -2.3 1,393,155 + B158DRAFT_1347 0.65 -0.9 1,393,160 + B158DRAFT_1347 0.65 +0.5 1,393,168 - B158DRAFT_1347 0.66 +0.2 1,393,168 - B158DRAFT_1347 0.66 -2.3 1,393,382 + B158DRAFT_1347 0.85 -0.1
Or see this region's nucleotide sequence