Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1319 and B158DRAFT_1320 overlap by 1 nucleotides B158DRAFT_1320 and B158DRAFT_1321 are separated by 10 nucleotides B158DRAFT_1321 and B158DRAFT_1322 are separated by 13 nucleotides
B158DRAFT_1319: B158DRAFT_1319 - 3-isopropylmalate dehydratase, large subunit, at 1,363,336 to 1,364,769
_1319
B158DRAFT_1320: B158DRAFT_1320 - 3-isopropylmalate dehydratase, small subunit, at 1,364,769 to 1,365,410
_1320
B158DRAFT_1321: B158DRAFT_1321 - hypothetical protein, at 1,365,421 to 1,365,828
_1321
B158DRAFT_1322: B158DRAFT_1322 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 1,365,842 to 1,366,918
_1322
Position (kb)
1365
1366 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1364.422 kb on + strand, within B158DRAFT_1319 at 1364.591 kb on + strand, within B158DRAFT_1319 at 1364.653 kb on - strand at 1364.668 kb on + strand at 1364.668 kb on + strand at 1364.668 kb on + strand at 1364.671 kb on - strand at 1364.676 kb on - strand at 1364.676 kb on - strand at 1364.751 kb on + strand at 1364.776 kb on - strand at 1364.786 kb on + strand at 1364.786 kb on + strand at 1364.786 kb on + strand at 1364.794 kb on - strand at 1364.794 kb on - strand at 1364.805 kb on + strand at 1364.805 kb on + strand at 1364.919 kb on - strand, within B158DRAFT_1320 at 1364.936 kb on + strand, within B158DRAFT_1320 at 1364.970 kb on + strand, within B158DRAFT_1320 at 1365.251 kb on + strand, within B158DRAFT_1320 at 1365.334 kb on + strand, within B158DRAFT_1320 at 1365.334 kb on + strand, within B158DRAFT_1320 at 1365.388 kb on + strand at 1365.496 kb on + strand, within B158DRAFT_1321 at 1365.508 kb on + strand, within B158DRAFT_1321 at 1365.516 kb on - strand, within B158DRAFT_1321 at 1365.541 kb on + strand, within B158DRAFT_1321 at 1365.549 kb on - strand, within B158DRAFT_1321 at 1365.615 kb on + strand, within B158DRAFT_1321 at 1365.615 kb on + strand, within B158DRAFT_1321 at 1365.815 kb on + strand at 1365.951 kb on - strand, within B158DRAFT_1322 at 1365.981 kb on + strand, within B158DRAFT_1322 at 1366.000 kb on + strand, within B158DRAFT_1322 at 1366.054 kb on - strand, within B158DRAFT_1322 at 1366.151 kb on + strand, within B158DRAFT_1322 at 1366.178 kb on + strand, within B158DRAFT_1322 at 1366.220 kb on + strand, within B158DRAFT_1322 at 1366.294 kb on + strand, within B158DRAFT_1322 at 1366.496 kb on + strand, within B158DRAFT_1322 at 1366.518 kb on - strand, within B158DRAFT_1322 at 1366.539 kb on + strand, within B158DRAFT_1322 at 1366.539 kb on + strand, within B158DRAFT_1322 at 1366.549 kb on - strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.663 kb on + strand, within B158DRAFT_1322 at 1366.663 kb on + strand, within B158DRAFT_1322 at 1366.663 kb on + strand, within B158DRAFT_1322 at 1366.665 kb on - strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.714 kb on - strand, within B158DRAFT_1322 at 1366.719 kb on - strand, within B158DRAFT_1322 at 1366.731 kb on + strand, within B158DRAFT_1322
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,364,422 + B158DRAFT_1319 0.76 -0.9 1,364,591 + B158DRAFT_1319 0.88 -0.1 1,364,653 - -0.4 1,364,668 + -1.7 1,364,668 + +0.0 1,364,668 + -1.7 1,364,671 - +0.9 1,364,676 - +0.2 1,364,676 - -1.0 1,364,751 + -0.3 1,364,776 - +2.3 1,364,786 + -0.3 1,364,786 + +1.5 1,364,786 + +0.9 1,364,794 - +1.3 1,364,794 - -1.1 1,364,805 + -0.3 1,364,805 + -0.2 1,364,919 - B158DRAFT_1320 0.23 +0.3 1,364,936 + B158DRAFT_1320 0.26 -0.6 1,364,970 + B158DRAFT_1320 0.31 -0.7 1,365,251 + B158DRAFT_1320 0.75 -1.9 1,365,334 + B158DRAFT_1320 0.88 +1.4 1,365,334 + B158DRAFT_1320 0.88 -0.1 1,365,388 + +1.3 1,365,496 + B158DRAFT_1321 0.18 -0.1 1,365,508 + B158DRAFT_1321 0.21 +2.4 1,365,516 - B158DRAFT_1321 0.23 -0.4 1,365,541 + B158DRAFT_1321 0.29 -0.6 1,365,549 - B158DRAFT_1321 0.31 +2.3 1,365,615 + B158DRAFT_1321 0.48 +0.9 1,365,615 + B158DRAFT_1321 0.48 +0.4 1,365,815 + +0.6 1,365,951 - B158DRAFT_1322 0.10 +2.3 1,365,981 + B158DRAFT_1322 0.13 -0.3 1,366,000 + B158DRAFT_1322 0.15 -0.7 1,366,054 - B158DRAFT_1322 0.20 +1.1 1,366,151 + B158DRAFT_1322 0.29 -0.8 1,366,178 + B158DRAFT_1322 0.31 -2.9 1,366,220 + B158DRAFT_1322 0.35 -1.3 1,366,294 + B158DRAFT_1322 0.42 -1.3 1,366,496 + B158DRAFT_1322 0.61 -0.4 1,366,518 - B158DRAFT_1322 0.63 +0.7 1,366,539 + B158DRAFT_1322 0.65 -0.6 1,366,539 + B158DRAFT_1322 0.65 +0.4 1,366,549 - B158DRAFT_1322 0.66 -0.5 1,366,657 + B158DRAFT_1322 0.76 -0.2 1,366,657 + B158DRAFT_1322 0.76 +0.4 1,366,657 + B158DRAFT_1322 0.76 +0.7 1,366,657 + B158DRAFT_1322 0.76 -0.6 1,366,663 + B158DRAFT_1322 0.76 -0.9 1,366,663 + B158DRAFT_1322 0.76 +0.4 1,366,663 + B158DRAFT_1322 0.76 -0.2 1,366,665 - B158DRAFT_1322 0.76 +2.3 1,366,679 + B158DRAFT_1322 0.78 -0.3 1,366,679 + B158DRAFT_1322 0.78 -0.5 1,366,679 + B158DRAFT_1322 0.78 -0.5 1,366,679 + B158DRAFT_1322 0.78 -1.7 1,366,714 - B158DRAFT_1322 0.81 +0.0 1,366,719 - B158DRAFT_1322 0.81 -0.6 1,366,731 + B158DRAFT_1322 0.83 -0.9
Or see this region's nucleotide sequence