Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1321

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1319 and B158DRAFT_1320 overlap by 1 nucleotidesB158DRAFT_1320 and B158DRAFT_1321 are separated by 10 nucleotidesB158DRAFT_1321 and B158DRAFT_1322 are separated by 13 nucleotides B158DRAFT_1319: B158DRAFT_1319 - 3-isopropylmalate dehydratase, large subunit, at 1,363,336 to 1,364,769 _1319 B158DRAFT_1320: B158DRAFT_1320 - 3-isopropylmalate dehydratase, small subunit, at 1,364,769 to 1,365,410 _1320 B158DRAFT_1321: B158DRAFT_1321 - hypothetical protein, at 1,365,421 to 1,365,828 _1321 B158DRAFT_1322: B158DRAFT_1322 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 1,365,842 to 1,366,918 _1322 Position (kb) 1365 1366Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1364.422 kb on + strand, within B158DRAFT_1319at 1364.591 kb on + strand, within B158DRAFT_1319at 1364.653 kb on - strandat 1364.668 kb on + strandat 1364.668 kb on + strandat 1364.668 kb on + strandat 1364.671 kb on - strandat 1364.676 kb on - strandat 1364.676 kb on - strandat 1364.751 kb on + strandat 1364.776 kb on - strandat 1364.786 kb on + strandat 1364.786 kb on + strandat 1364.786 kb on + strandat 1364.794 kb on - strandat 1364.794 kb on - strandat 1364.805 kb on + strandat 1364.805 kb on + strandat 1364.919 kb on - strand, within B158DRAFT_1320at 1364.936 kb on + strand, within B158DRAFT_1320at 1364.970 kb on + strand, within B158DRAFT_1320at 1365.251 kb on + strand, within B158DRAFT_1320at 1365.334 kb on + strand, within B158DRAFT_1320at 1365.334 kb on + strand, within B158DRAFT_1320at 1365.388 kb on + strandat 1365.496 kb on + strand, within B158DRAFT_1321at 1365.508 kb on + strand, within B158DRAFT_1321at 1365.516 kb on - strand, within B158DRAFT_1321at 1365.541 kb on + strand, within B158DRAFT_1321at 1365.549 kb on - strand, within B158DRAFT_1321at 1365.615 kb on + strand, within B158DRAFT_1321at 1365.615 kb on + strand, within B158DRAFT_1321at 1365.815 kb on + strandat 1365.951 kb on - strand, within B158DRAFT_1322at 1365.981 kb on + strand, within B158DRAFT_1322at 1366.000 kb on + strand, within B158DRAFT_1322at 1366.054 kb on - strand, within B158DRAFT_1322at 1366.151 kb on + strand, within B158DRAFT_1322at 1366.178 kb on + strand, within B158DRAFT_1322at 1366.220 kb on + strand, within B158DRAFT_1322at 1366.294 kb on + strand, within B158DRAFT_1322at 1366.496 kb on + strand, within B158DRAFT_1322at 1366.518 kb on - strand, within B158DRAFT_1322at 1366.539 kb on + strand, within B158DRAFT_1322at 1366.539 kb on + strand, within B158DRAFT_1322at 1366.549 kb on - strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.657 kb on + strand, within B158DRAFT_1322at 1366.663 kb on + strand, within B158DRAFT_1322at 1366.663 kb on + strand, within B158DRAFT_1322at 1366.663 kb on + strand, within B158DRAFT_1322at 1366.665 kb on - strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.679 kb on + strand, within B158DRAFT_1322at 1366.714 kb on - strand, within B158DRAFT_1322at 1366.719 kb on - strand, within B158DRAFT_1322at 1366.731 kb on + strand, within B158DRAFT_1322

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,364,422 + B158DRAFT_1319 0.76 -0.9
1,364,591 + B158DRAFT_1319 0.88 -0.1
1,364,653 - -0.4
1,364,668 + -1.7
1,364,668 + +0.0
1,364,668 + -1.7
1,364,671 - +0.9
1,364,676 - +0.2
1,364,676 - -1.0
1,364,751 + -0.3
1,364,776 - +2.3
1,364,786 + -0.3
1,364,786 + +1.5
1,364,786 + +0.9
1,364,794 - +1.3
1,364,794 - -1.1
1,364,805 + -0.3
1,364,805 + -0.2
1,364,919 - B158DRAFT_1320 0.23 +0.3
1,364,936 + B158DRAFT_1320 0.26 -0.6
1,364,970 + B158DRAFT_1320 0.31 -0.7
1,365,251 + B158DRAFT_1320 0.75 -1.9
1,365,334 + B158DRAFT_1320 0.88 +1.4
1,365,334 + B158DRAFT_1320 0.88 -0.1
1,365,388 + +1.3
1,365,496 + B158DRAFT_1321 0.18 -0.1
1,365,508 + B158DRAFT_1321 0.21 +2.4
1,365,516 - B158DRAFT_1321 0.23 -0.4
1,365,541 + B158DRAFT_1321 0.29 -0.6
1,365,549 - B158DRAFT_1321 0.31 +2.3
1,365,615 + B158DRAFT_1321 0.48 +0.9
1,365,615 + B158DRAFT_1321 0.48 +0.4
1,365,815 + +0.6
1,365,951 - B158DRAFT_1322 0.10 +2.3
1,365,981 + B158DRAFT_1322 0.13 -0.3
1,366,000 + B158DRAFT_1322 0.15 -0.7
1,366,054 - B158DRAFT_1322 0.20 +1.1
1,366,151 + B158DRAFT_1322 0.29 -0.8
1,366,178 + B158DRAFT_1322 0.31 -2.9
1,366,220 + B158DRAFT_1322 0.35 -1.3
1,366,294 + B158DRAFT_1322 0.42 -1.3
1,366,496 + B158DRAFT_1322 0.61 -0.4
1,366,518 - B158DRAFT_1322 0.63 +0.7
1,366,539 + B158DRAFT_1322 0.65 -0.6
1,366,539 + B158DRAFT_1322 0.65 +0.4
1,366,549 - B158DRAFT_1322 0.66 -0.5
1,366,657 + B158DRAFT_1322 0.76 -0.2
1,366,657 + B158DRAFT_1322 0.76 +0.4
1,366,657 + B158DRAFT_1322 0.76 +0.7
1,366,657 + B158DRAFT_1322 0.76 -0.6
1,366,663 + B158DRAFT_1322 0.76 -0.9
1,366,663 + B158DRAFT_1322 0.76 +0.4
1,366,663 + B158DRAFT_1322 0.76 -0.2
1,366,665 - B158DRAFT_1322 0.76 +2.3
1,366,679 + B158DRAFT_1322 0.78 -0.3
1,366,679 + B158DRAFT_1322 0.78 -0.5
1,366,679 + B158DRAFT_1322 0.78 -0.5
1,366,679 + B158DRAFT_1322 0.78 -1.7
1,366,714 - B158DRAFT_1322 0.81 +0.0
1,366,719 - B158DRAFT_1322 0.81 -0.6
1,366,731 + B158DRAFT_1322 0.83 -0.9

Or see this region's nucleotide sequence