Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1245 and B158DRAFT_1246 are separated by 106 nucleotides B158DRAFT_1246 and B158DRAFT_1247 are separated by 189 nucleotides
B158DRAFT_1245: B158DRAFT_1245 - Outer membrane cobalamin receptor protein, at 1,284,328 to 1,286,283
_1245
B158DRAFT_1246: B158DRAFT_1246 - hypothetical protein, at 1,286,390 to 1,286,695
_1246
B158DRAFT_1247: B158DRAFT_1247 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10), at 1,286,885 to 1,288,306
_1247
Position (kb)
1286
1287 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1285.413 kb on - strand, within B158DRAFT_1245 at 1285.427 kb on + strand, within B158DRAFT_1245 at 1285.434 kb on - strand, within B158DRAFT_1245 at 1285.474 kb on + strand, within B158DRAFT_1245 at 1285.474 kb on + strand, within B158DRAFT_1245 at 1285.474 kb on + strand, within B158DRAFT_1245 at 1285.482 kb on - strand, within B158DRAFT_1245 at 1285.482 kb on - strand, within B158DRAFT_1245 at 1285.482 kb on - strand, within B158DRAFT_1245 at 1285.482 kb on - strand, within B158DRAFT_1245 at 1285.509 kb on + strand, within B158DRAFT_1245 at 1285.509 kb on + strand, within B158DRAFT_1245 at 1285.517 kb on - strand, within B158DRAFT_1245 at 1285.635 kb on + strand, within B158DRAFT_1245 at 1285.636 kb on - strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.638 kb on + strand, within B158DRAFT_1245 at 1285.640 kb on + strand, within B158DRAFT_1245 at 1285.646 kb on - strand, within B158DRAFT_1245 at 1285.648 kb on - strand, within B158DRAFT_1245 at 1285.653 kb on - strand, within B158DRAFT_1245 at 1285.693 kb on + strand, within B158DRAFT_1245 at 1285.723 kb on - strand, within B158DRAFT_1245 at 1285.745 kb on + strand, within B158DRAFT_1245 at 1285.745 kb on + strand, within B158DRAFT_1245 at 1285.745 kb on + strand, within B158DRAFT_1245 at 1285.745 kb on + strand, within B158DRAFT_1245 at 1285.752 kb on + strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.753 kb on - strand, within B158DRAFT_1245 at 1285.832 kb on + strand, within B158DRAFT_1245 at 1285.840 kb on - strand, within B158DRAFT_1245 at 1285.842 kb on + strand, within B158DRAFT_1245 at 1285.842 kb on - strand, within B158DRAFT_1245 at 1285.842 kb on - strand, within B158DRAFT_1245 at 1285.844 kb on + strand, within B158DRAFT_1245 at 1285.850 kb on - strand, within B158DRAFT_1245 at 1285.850 kb on - strand, within B158DRAFT_1245 at 1285.850 kb on - strand, within B158DRAFT_1245 at 1285.892 kb on + strand, within B158DRAFT_1245 at 1285.892 kb on - strand, within B158DRAFT_1245 at 1285.892 kb on - strand, within B158DRAFT_1245 at 1285.956 kb on + strand, within B158DRAFT_1245 at 1285.956 kb on + strand, within B158DRAFT_1245 at 1285.963 kb on - strand, within B158DRAFT_1245 at 1285.964 kb on - strand, within B158DRAFT_1245 at 1285.964 kb on - strand, within B158DRAFT_1245 at 1285.987 kb on - strand, within B158DRAFT_1245 at 1285.987 kb on - strand, within B158DRAFT_1245 at 1286.062 kb on + strand, within B158DRAFT_1245 at 1286.062 kb on + strand, within B158DRAFT_1245 at 1286.070 kb on - strand, within B158DRAFT_1245 at 1286.126 kb on - strand at 1286.328 kb on - strand at 1286.338 kb on + strand at 1286.345 kb on + strand at 1286.345 kb on + strand at 1286.347 kb on - strand at 1286.372 kb on - strand at 1286.380 kb on - strand at 1286.409 kb on + strand at 1286.419 kb on + strand at 1286.425 kb on - strand, within B158DRAFT_1246 at 1286.427 kb on - strand, within B158DRAFT_1246 at 1286.427 kb on - strand, within B158DRAFT_1246 at 1286.435 kb on - strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.578 kb on + strand, within B158DRAFT_1246 at 1286.579 kb on + strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.586 kb on - strand, within B158DRAFT_1246 at 1286.598 kb on + strand, within B158DRAFT_1246 at 1286.653 kb on + strand, within B158DRAFT_1246 at 1286.679 kb on + strand at 1286.684 kb on + strand at 1286.687 kb on - strand at 1286.711 kb on + strand at 1286.802 kb on + strand at 1286.811 kb on + strand at 1286.811 kb on + strand at 1286.812 kb on - strand at 1286.816 kb on + strand at 1286.817 kb on - strand at 1286.817 kb on - strand at 1286.817 kb on - strand at 1286.834 kb on - strand at 1286.901 kb on - strand at 1286.906 kb on - strand at 1287.026 kb on + strand at 1287.161 kb on + strand, within B158DRAFT_1247 at 1287.161 kb on + strand, within B158DRAFT_1247 at 1287.169 kb on - strand, within B158DRAFT_1247 at 1287.169 kb on - strand, within B158DRAFT_1247 at 1287.169 kb on - strand, within B158DRAFT_1247 at 1287.169 kb on - strand, within B158DRAFT_1247 at 1287.179 kb on - strand, within B158DRAFT_1247 at 1287.225 kb on + strand, within B158DRAFT_1247 at 1287.227 kb on + strand, within B158DRAFT_1247 at 1287.233 kb on - strand, within B158DRAFT_1247 at 1287.233 kb on - strand, within B158DRAFT_1247 at 1287.233 kb on - strand, within B158DRAFT_1247 at 1287.268 kb on - strand, within B158DRAFT_1247 at 1287.299 kb on + strand, within B158DRAFT_1247 at 1287.314 kb on - strand, within B158DRAFT_1247 at 1287.429 kb on - strand, within B158DRAFT_1247 at 1287.429 kb on - strand, within B158DRAFT_1247 at 1287.445 kb on + strand, within B158DRAFT_1247 at 1287.498 kb on - strand, within B158DRAFT_1247 at 1287.589 kb on - strand, within B158DRAFT_1247 at 1287.599 kb on - strand, within B158DRAFT_1247 at 1287.648 kb on - strand, within B158DRAFT_1247 at 1287.648 kb on - strand, within B158DRAFT_1247
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,285,413 - B158DRAFT_1245 0.55 -1.2 1,285,427 + B158DRAFT_1245 0.56 -0.4 1,285,434 - B158DRAFT_1245 0.57 -1.6 1,285,474 + B158DRAFT_1245 0.59 +0.5 1,285,474 + B158DRAFT_1245 0.59 +0.2 1,285,474 + B158DRAFT_1245 0.59 -1.2 1,285,482 - B158DRAFT_1245 0.59 -1.5 1,285,482 - B158DRAFT_1245 0.59 +0.4 1,285,482 - B158DRAFT_1245 0.59 -0.2 1,285,482 - B158DRAFT_1245 0.59 -0.2 1,285,509 + B158DRAFT_1245 0.60 +0.8 1,285,509 + B158DRAFT_1245 0.60 -0.5 1,285,517 - B158DRAFT_1245 0.61 -1.5 1,285,635 + B158DRAFT_1245 0.67 -1.6 1,285,636 - B158DRAFT_1245 0.67 +1.4 1,285,638 + B158DRAFT_1245 0.67 -1.3 1,285,638 + B158DRAFT_1245 0.67 -1.8 1,285,638 + B158DRAFT_1245 0.67 -0.9 1,285,638 + B158DRAFT_1245 0.67 -0.7 1,285,638 + B158DRAFT_1245 0.67 -0.4 1,285,638 + B158DRAFT_1245 0.67 -0.5 1,285,638 + B158DRAFT_1245 0.67 -0.9 1,285,638 + B158DRAFT_1245 0.67 +0.3 1,285,640 + B158DRAFT_1245 0.67 -0.2 1,285,646 - B158DRAFT_1245 0.67 -0.5 1,285,648 - B158DRAFT_1245 0.67 +0.6 1,285,653 - B158DRAFT_1245 0.68 +1.2 1,285,693 + B158DRAFT_1245 0.70 -0.4 1,285,723 - B158DRAFT_1245 0.71 -0.8 1,285,745 + B158DRAFT_1245 0.72 +0.6 1,285,745 + B158DRAFT_1245 0.72 -1.0 1,285,745 + B158DRAFT_1245 0.72 +0.1 1,285,745 + B158DRAFT_1245 0.72 -1.2 1,285,752 + B158DRAFT_1245 0.73 -1.0 1,285,753 - B158DRAFT_1245 0.73 +1.3 1,285,753 - B158DRAFT_1245 0.73 +1.0 1,285,753 - B158DRAFT_1245 0.73 -1.3 1,285,753 - B158DRAFT_1245 0.73 -0.4 1,285,753 - B158DRAFT_1245 0.73 -1.0 1,285,753 - B158DRAFT_1245 0.73 +1.2 1,285,753 - B158DRAFT_1245 0.73 -1.7 1,285,753 - B158DRAFT_1245 0.73 +1.0 1,285,832 + B158DRAFT_1245 0.77 -0.2 1,285,840 - B158DRAFT_1245 0.77 -1.0 1,285,842 + B158DRAFT_1245 0.77 +1.5 1,285,842 - B158DRAFT_1245 0.77 +0.4 1,285,842 - B158DRAFT_1245 0.77 -1.9 1,285,844 + B158DRAFT_1245 0.78 -0.1 1,285,850 - B158DRAFT_1245 0.78 -1.4 1,285,850 - B158DRAFT_1245 0.78 -1.9 1,285,850 - B158DRAFT_1245 0.78 -2.6 1,285,892 + B158DRAFT_1245 0.80 -0.9 1,285,892 - B158DRAFT_1245 0.80 -0.4 1,285,892 - B158DRAFT_1245 0.80 -0.9 1,285,956 + B158DRAFT_1245 0.83 +0.6 1,285,956 + B158DRAFT_1245 0.83 -0.5 1,285,963 - B158DRAFT_1245 0.84 -0.7 1,285,964 - B158DRAFT_1245 0.84 -0.1 1,285,964 - B158DRAFT_1245 0.84 -0.7 1,285,987 - B158DRAFT_1245 0.85 -1.3 1,285,987 - B158DRAFT_1245 0.85 +0.3 1,286,062 + B158DRAFT_1245 0.89 +0.2 1,286,062 + B158DRAFT_1245 0.89 -0.9 1,286,070 - B158DRAFT_1245 0.89 -0.4 1,286,126 - -0.2 1,286,328 - -0.7 1,286,338 + -1.6 1,286,345 + -0.7 1,286,345 + -0.8 1,286,347 - +0.1 1,286,372 - -1.5 1,286,380 - -0.7 1,286,409 + -0.1 1,286,419 + -0.1 1,286,425 - B158DRAFT_1246 0.11 -0.4 1,286,427 - B158DRAFT_1246 0.12 -1.1 1,286,427 - B158DRAFT_1246 0.12 -0.6 1,286,435 - B158DRAFT_1246 0.15 +0.4 1,286,578 + B158DRAFT_1246 0.61 -0.0 1,286,578 + B158DRAFT_1246 0.61 +1.2 1,286,578 + B158DRAFT_1246 0.61 -0.3 1,286,578 + B158DRAFT_1246 0.61 -1.1 1,286,578 + B158DRAFT_1246 0.61 +0.4 1,286,578 + B158DRAFT_1246 0.61 -0.8 1,286,578 + B158DRAFT_1246 0.61 -0.0 1,286,578 + B158DRAFT_1246 0.61 +1.0 1,286,578 + B158DRAFT_1246 0.61 +1.3 1,286,578 + B158DRAFT_1246 0.61 +2.2 1,286,578 + B158DRAFT_1246 0.61 +2.1 1,286,578 + B158DRAFT_1246 0.61 -1.1 1,286,578 + B158DRAFT_1246 0.61 -0.8 1,286,579 + B158DRAFT_1246 0.62 -0.5 1,286,586 - B158DRAFT_1246 0.64 +0.2 1,286,586 - B158DRAFT_1246 0.64 -0.2 1,286,586 - B158DRAFT_1246 0.64 +0.2 1,286,586 - B158DRAFT_1246 0.64 -1.7 1,286,586 - B158DRAFT_1246 0.64 -1.3 1,286,586 - B158DRAFT_1246 0.64 -1.0 1,286,586 - B158DRAFT_1246 0.64 +0.7 1,286,586 - B158DRAFT_1246 0.64 -0.4 1,286,586 - B158DRAFT_1246 0.64 +1.3 1,286,586 - B158DRAFT_1246 0.64 +0.5 1,286,586 - B158DRAFT_1246 0.64 -1.6 1,286,586 - B158DRAFT_1246 0.64 -0.6 1,286,586 - B158DRAFT_1246 0.64 -1.3 1,286,586 - B158DRAFT_1246 0.64 +0.4 1,286,586 - B158DRAFT_1246 0.64 -0.8 1,286,586 - B158DRAFT_1246 0.64 -0.2 1,286,586 - B158DRAFT_1246 0.64 -0.9 1,286,586 - B158DRAFT_1246 0.64 -0.7 1,286,586 - B158DRAFT_1246 0.64 +0.1 1,286,586 - B158DRAFT_1246 0.64 +0.1 1,286,598 + B158DRAFT_1246 0.68 -1.6 1,286,653 + B158DRAFT_1246 0.86 -0.9 1,286,679 + -1.8 1,286,684 + -1.0 1,286,687 - -0.2 1,286,711 + -0.0 1,286,802 + +0.4 1,286,811 + +1.5 1,286,811 + -0.2 1,286,812 - +1.0 1,286,816 + +0.8 1,286,817 - +1.0 1,286,817 - +0.8 1,286,817 - +1.7 1,286,834 - +0.6 1,286,901 - +0.2 1,286,906 - +1.1 1,287,026 + +0.7 1,287,161 + B158DRAFT_1247 0.19 +1.6 1,287,161 + B158DRAFT_1247 0.19 +0.1 1,287,169 - B158DRAFT_1247 0.20 +0.6 1,287,169 - B158DRAFT_1247 0.20 +0.2 1,287,169 - B158DRAFT_1247 0.20 +0.6 1,287,169 - B158DRAFT_1247 0.20 -1.2 1,287,179 - B158DRAFT_1247 0.21 +0.3 1,287,225 + B158DRAFT_1247 0.24 +0.4 1,287,227 + B158DRAFT_1247 0.24 +0.2 1,287,233 - B158DRAFT_1247 0.24 +3.7 1,287,233 - B158DRAFT_1247 0.24 +1.6 1,287,233 - B158DRAFT_1247 0.24 +0.5 1,287,268 - B158DRAFT_1247 0.27 +0.5 1,287,299 + B158DRAFT_1247 0.29 +0.9 1,287,314 - B158DRAFT_1247 0.30 +0.9 1,287,429 - B158DRAFT_1247 0.38 +0.9 1,287,429 - B158DRAFT_1247 0.38 +1.4 1,287,445 + B158DRAFT_1247 0.39 +0.1 1,287,498 - B158DRAFT_1247 0.43 -0.1 1,287,589 - B158DRAFT_1247 0.50 +0.7 1,287,599 - B158DRAFT_1247 0.50 +0.5 1,287,648 - B158DRAFT_1247 0.54 -0.1 1,287,648 - B158DRAFT_1247 0.54 +1.1
Or see this region's nucleotide sequence