Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1102 and B158DRAFT_1103 are separated by 311 nucleotides B158DRAFT_1103 and B158DRAFT_1104 are separated by 190 nucleotides
B158DRAFT_1102: B158DRAFT_1102 - hypothetical protein, at 1,140,978 to 1,141,652
_1102
B158DRAFT_1103: B158DRAFT_1103 - hypothetical protein, at 1,141,964 to 1,142,275
_1103
B158DRAFT_1104: B158DRAFT_1104 - Putative intracellular protease/amidase, at 1,142,466 to 1,143,143
_1104
Position (kb)
1141
1142
1143 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1140.966 kb on - strand at 1140.969 kb on + strand at 1141.112 kb on - strand, within B158DRAFT_1102 at 1141.180 kb on + strand, within B158DRAFT_1102 at 1141.180 kb on + strand, within B158DRAFT_1102 at 1141.220 kb on + strand, within B158DRAFT_1102 at 1141.260 kb on + strand, within B158DRAFT_1102 at 1141.423 kb on - strand, within B158DRAFT_1102 at 1141.500 kb on + strand, within B158DRAFT_1102 at 1141.510 kb on + strand, within B158DRAFT_1102 at 1141.532 kb on + strand, within B158DRAFT_1102 at 1141.532 kb on + strand, within B158DRAFT_1102 at 1141.532 kb on + strand, within B158DRAFT_1102 at 1141.540 kb on - strand, within B158DRAFT_1102 at 1141.540 kb on - strand, within B158DRAFT_1102 at 1141.540 kb on - strand, within B158DRAFT_1102 at 1141.540 kb on - strand, within B158DRAFT_1102 at 1141.540 kb on - strand, within B158DRAFT_1102 at 1141.840 kb on + strand at 1141.848 kb on - strand at 1141.850 kb on + strand at 1141.899 kb on + strand at 1142.007 kb on + strand, within B158DRAFT_1103 at 1142.024 kb on - strand, within B158DRAFT_1103 at 1142.043 kb on + strand, within B158DRAFT_1103 at 1142.051 kb on - strand, within B158DRAFT_1103 at 1142.053 kb on + strand, within B158DRAFT_1103 at 1142.178 kb on - strand, within B158DRAFT_1103 at 1142.187 kb on + strand, within B158DRAFT_1103 at 1142.193 kb on - strand, within B158DRAFT_1103 at 1142.203 kb on + strand, within B158DRAFT_1103 at 1142.244 kb on - strand at 1142.244 kb on - strand at 1142.244 kb on - strand at 1142.311 kb on + strand at 1142.311 kb on + strand at 1142.319 kb on - strand at 1142.319 kb on - strand at 1142.319 kb on - strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.322 kb on + strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.330 kb on - strand at 1142.390 kb on - strand at 1142.420 kb on + strand at 1142.428 kb on - strand at 1142.448 kb on + strand at 1142.456 kb on - strand at 1142.456 kb on - strand at 1142.526 kb on + strand at 1142.541 kb on - strand, within B158DRAFT_1104 at 1142.595 kb on + strand, within B158DRAFT_1104 at 1142.615 kb on + strand, within B158DRAFT_1104 at 1142.623 kb on - strand, within B158DRAFT_1104 at 1142.799 kb on + strand, within B158DRAFT_1104 at 1142.807 kb on - strand, within B158DRAFT_1104 at 1142.817 kb on - strand, within B158DRAFT_1104 at 1142.817 kb on - strand, within B158DRAFT_1104 at 1142.885 kb on - strand, within B158DRAFT_1104 at 1142.890 kb on - strand, within B158DRAFT_1104 at 1142.947 kb on + strand, within B158DRAFT_1104 at 1142.955 kb on - strand, within B158DRAFT_1104 at 1142.964 kb on - strand, within B158DRAFT_1104 at 1143.034 kb on - strand, within B158DRAFT_1104 at 1143.084 kb on + strand at 1143.091 kb on + strand at 1143.125 kb on + strand at 1143.133 kb on - strand at 1143.133 kb on - strand at 1143.181 kb on + strand at 1143.181 kb on + strand at 1143.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,140,966 - +0.9 1,140,969 + -0.6 1,141,112 - B158DRAFT_1102 0.20 +1.2 1,141,180 + B158DRAFT_1102 0.30 +1.6 1,141,180 + B158DRAFT_1102 0.30 -1.2 1,141,220 + B158DRAFT_1102 0.36 +0.3 1,141,260 + B158DRAFT_1102 0.42 -0.8 1,141,423 - B158DRAFT_1102 0.66 -1.3 1,141,500 + B158DRAFT_1102 0.77 -0.7 1,141,510 + B158DRAFT_1102 0.79 -1.0 1,141,532 + B158DRAFT_1102 0.82 +0.6 1,141,532 + B158DRAFT_1102 0.82 +0.2 1,141,532 + B158DRAFT_1102 0.82 -1.3 1,141,540 - B158DRAFT_1102 0.83 +0.4 1,141,540 - B158DRAFT_1102 0.83 -1.2 1,141,540 - B158DRAFT_1102 0.83 +3.0 1,141,540 - B158DRAFT_1102 0.83 -1.1 1,141,540 - B158DRAFT_1102 0.83 +0.3 1,141,840 + -0.8 1,141,848 - -0.7 1,141,850 + -1.0 1,141,899 + -0.9 1,142,007 + B158DRAFT_1103 0.14 -0.8 1,142,024 - B158DRAFT_1103 0.19 +0.3 1,142,043 + B158DRAFT_1103 0.25 +2.5 1,142,051 - B158DRAFT_1103 0.28 -0.3 1,142,053 + B158DRAFT_1103 0.29 +1.0 1,142,178 - B158DRAFT_1103 0.69 -1.0 1,142,187 + B158DRAFT_1103 0.71 -0.8 1,142,193 - B158DRAFT_1103 0.73 -0.9 1,142,203 + B158DRAFT_1103 0.77 -1.6 1,142,244 - +0.2 1,142,244 - -0.8 1,142,244 - -0.6 1,142,311 + -1.2 1,142,311 + -0.2 1,142,319 - -0.5 1,142,319 - -0.6 1,142,319 - -2.0 1,142,322 + -1.2 1,142,322 + -1.9 1,142,322 + -0.3 1,142,322 + -1.1 1,142,322 + -0.3 1,142,322 + -1.4 1,142,322 + +1.3 1,142,322 + -0.7 1,142,322 + -0.8 1,142,322 + -0.5 1,142,322 + +0.5 1,142,322 + -0.9 1,142,322 + -1.7 1,142,322 + -1.8 1,142,330 - +1.4 1,142,330 - -1.0 1,142,330 - -2.4 1,142,330 - +1.0 1,142,330 - -0.6 1,142,330 - -0.6 1,142,330 - -1.2 1,142,330 - -0.7 1,142,330 - +0.2 1,142,390 - +0.4 1,142,420 + -0.9 1,142,428 - -1.3 1,142,448 + -1.0 1,142,456 - -1.0 1,142,456 - -1.7 1,142,526 + -0.8 1,142,541 - B158DRAFT_1104 0.11 +0.4 1,142,595 + B158DRAFT_1104 0.19 -2.3 1,142,615 + B158DRAFT_1104 0.22 +0.7 1,142,623 - B158DRAFT_1104 0.23 -0.5 1,142,799 + B158DRAFT_1104 0.49 +0.5 1,142,807 - B158DRAFT_1104 0.50 +0.2 1,142,817 - B158DRAFT_1104 0.52 -1.0 1,142,817 - B158DRAFT_1104 0.52 -1.0 1,142,885 - B158DRAFT_1104 0.62 -0.8 1,142,890 - B158DRAFT_1104 0.63 +0.3 1,142,947 + B158DRAFT_1104 0.71 +1.3 1,142,955 - B158DRAFT_1104 0.72 -0.2 1,142,964 - B158DRAFT_1104 0.73 +0.5 1,143,034 - B158DRAFT_1104 0.84 -0.6 1,143,084 + -0.3 1,143,091 + +0.4 1,143,125 + +0.7 1,143,133 - +0.1 1,143,133 - -0.4 1,143,181 + +0.2 1,143,181 + -0.8 1,143,181 + -1.0
Or see this region's nucleotide sequence