Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1077 and B158DRAFT_1078 are separated by 6 nucleotides B158DRAFT_1078 and B158DRAFT_1080 are separated by 417 nucleotides
B158DRAFT_1077: B158DRAFT_1077 - Fatty-acid desaturase, at 1,115,807 to 1,116,718
_1077
B158DRAFT_1078: B158DRAFT_1078 - hypothetical protein, at 1,116,725 to 1,117,114
_1078
B158DRAFT_1080: B158DRAFT_1080 - ribosomal protein S2, bacterial type, at 1,117,532 to 1,118,266
_1080
Position (kb)
1116
1117
1118 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1115.730 kb on - strand at 1115.735 kb on - strand at 1115.751 kb on + strand at 1115.764 kb on + strand at 1115.764 kb on + strand at 1115.764 kb on + strand at 1115.772 kb on + strand at 1115.772 kb on - strand at 1115.772 kb on - strand at 1115.785 kb on + strand at 1115.845 kb on - strand at 1115.845 kb on - strand at 1115.870 kb on - strand at 1115.879 kb on - strand at 1115.880 kb on - strand at 1115.899 kb on - strand, within B158DRAFT_1077 at 1115.984 kb on - strand, within B158DRAFT_1077 at 1116.043 kb on + strand, within B158DRAFT_1077 at 1116.076 kb on + strand, within B158DRAFT_1077 at 1116.076 kb on + strand, within B158DRAFT_1077 at 1116.076 kb on + strand, within B158DRAFT_1077 at 1116.079 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.084 kb on - strand, within B158DRAFT_1077 at 1116.184 kb on + strand, within B158DRAFT_1077 at 1116.192 kb on - strand, within B158DRAFT_1077 at 1116.199 kb on - strand, within B158DRAFT_1077 at 1116.199 kb on - strand, within B158DRAFT_1077 at 1116.199 kb on - strand, within B158DRAFT_1077 at 1116.201 kb on + strand, within B158DRAFT_1077 at 1116.317 kb on + strand, within B158DRAFT_1077 at 1116.325 kb on - strand, within B158DRAFT_1077 at 1116.387 kb on - strand, within B158DRAFT_1077 at 1116.420 kb on + strand, within B158DRAFT_1077 at 1116.420 kb on + strand, within B158DRAFT_1077 at 1116.426 kb on + strand, within B158DRAFT_1077 at 1116.428 kb on - strand, within B158DRAFT_1077 at 1116.428 kb on - strand, within B158DRAFT_1077 at 1116.429 kb on - strand, within B158DRAFT_1077 at 1116.478 kb on - strand, within B158DRAFT_1077 at 1116.509 kb on + strand, within B158DRAFT_1077 at 1116.509 kb on + strand, within B158DRAFT_1077 at 1116.517 kb on - strand, within B158DRAFT_1077 at 1116.517 kb on - strand, within B158DRAFT_1077 at 1116.546 kb on - strand, within B158DRAFT_1077 at 1116.546 kb on - strand, within B158DRAFT_1077 at 1116.546 kb on - strand, within B158DRAFT_1077 at 1116.556 kb on - strand, within B158DRAFT_1077 at 1116.556 kb on - strand, within B158DRAFT_1077 at 1116.584 kb on + strand, within B158DRAFT_1077 at 1116.639 kb on + strand at 1116.639 kb on + strand at 1116.647 kb on - strand at 1116.660 kb on + strand at 1116.660 kb on + strand at 1116.665 kb on + strand at 1116.798 kb on + strand, within B158DRAFT_1078 at 1116.899 kb on + strand, within B158DRAFT_1078 at 1116.935 kb on + strand, within B158DRAFT_1078 at 1117.033 kb on + strand, within B158DRAFT_1078 at 1117.033 kb on + strand, within B158DRAFT_1078 at 1117.041 kb on - strand, within B158DRAFT_1078 at 1117.088 kb on + strand at 1117.111 kb on + strand at 1117.118 kb on + strand at 1117.149 kb on - strand at 1117.157 kb on + strand at 1117.179 kb on - strand at 1117.184 kb on - strand at 1117.219 kb on + strand at 1117.219 kb on + strand at 1117.227 kb on - strand at 1117.227 kb on - strand at 1117.258 kb on + strand at 1117.258 kb on + strand at 1117.277 kb on - strand at 1117.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,115,730 - -1.3 1,115,735 - -1.0 1,115,751 + -1.1 1,115,764 + +0.2 1,115,764 + -0.5 1,115,764 + -0.2 1,115,772 + -0.8 1,115,772 - -1.2 1,115,772 - -0.9 1,115,785 + -1.2 1,115,845 - +0.0 1,115,845 - -0.7 1,115,870 - -0.9 1,115,879 - -1.6 1,115,880 - +0.1 1,115,899 - B158DRAFT_1077 0.10 -0.2 1,115,984 - B158DRAFT_1077 0.19 +0.2 1,116,043 + B158DRAFT_1077 0.26 -1.2 1,116,076 + B158DRAFT_1077 0.29 +0.0 1,116,076 + B158DRAFT_1077 0.29 +2.3 1,116,076 + B158DRAFT_1077 0.29 -1.0 1,116,079 - B158DRAFT_1077 0.30 -0.9 1,116,084 - B158DRAFT_1077 0.30 -0.6 1,116,084 - B158DRAFT_1077 0.30 +0.5 1,116,084 - B158DRAFT_1077 0.30 +1.2 1,116,084 - B158DRAFT_1077 0.30 -0.9 1,116,084 - B158DRAFT_1077 0.30 +0.5 1,116,184 + B158DRAFT_1077 0.41 +2.0 1,116,192 - B158DRAFT_1077 0.42 +0.3 1,116,199 - B158DRAFT_1077 0.43 -0.5 1,116,199 - B158DRAFT_1077 0.43 -0.6 1,116,199 - B158DRAFT_1077 0.43 -0.9 1,116,201 + B158DRAFT_1077 0.43 -0.2 1,116,317 + B158DRAFT_1077 0.56 -0.2 1,116,325 - B158DRAFT_1077 0.57 -0.4 1,116,387 - B158DRAFT_1077 0.64 +0.8 1,116,420 + B158DRAFT_1077 0.67 -0.3 1,116,420 + B158DRAFT_1077 0.67 -0.1 1,116,426 + B158DRAFT_1077 0.68 -0.6 1,116,428 - B158DRAFT_1077 0.68 -1.4 1,116,428 - B158DRAFT_1077 0.68 +0.1 1,116,429 - B158DRAFT_1077 0.68 -0.2 1,116,478 - B158DRAFT_1077 0.74 +0.6 1,116,509 + B158DRAFT_1077 0.77 +0.9 1,116,509 + B158DRAFT_1077 0.77 +2.4 1,116,517 - B158DRAFT_1077 0.78 -1.0 1,116,517 - B158DRAFT_1077 0.78 -2.5 1,116,546 - B158DRAFT_1077 0.81 -0.8 1,116,546 - B158DRAFT_1077 0.81 -2.6 1,116,546 - B158DRAFT_1077 0.81 +0.1 1,116,556 - B158DRAFT_1077 0.82 -1.0 1,116,556 - B158DRAFT_1077 0.82 -0.8 1,116,584 + B158DRAFT_1077 0.85 -0.6 1,116,639 + +1.3 1,116,639 + -0.6 1,116,647 - -0.2 1,116,660 + -2.2 1,116,660 + -1.2 1,116,665 + -2.1 1,116,798 + B158DRAFT_1078 0.19 -1.7 1,116,899 + B158DRAFT_1078 0.45 -0.9 1,116,935 + B158DRAFT_1078 0.54 -0.2 1,117,033 + B158DRAFT_1078 0.79 +0.5 1,117,033 + B158DRAFT_1078 0.79 +0.4 1,117,041 - B158DRAFT_1078 0.81 +0.5 1,117,088 + -1.0 1,117,111 + -1.7 1,117,118 + -0.2 1,117,149 - -0.1 1,117,157 + -0.8 1,117,179 - -0.3 1,117,184 - -1.3 1,117,219 + -2.2 1,117,219 + +0.1 1,117,227 - -0.1 1,117,227 - -0.8 1,117,258 + +0.2 1,117,258 + +0.4 1,117,277 - -1.0 1,117,296 + -0.6
Or see this region's nucleotide sequence