Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1066

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1064 and B158DRAFT_1065 are separated by 1 nucleotidesB158DRAFT_1065 and B158DRAFT_1066 are separated by 57 nucleotidesB158DRAFT_1066 and B158DRAFT_1067 are separated by 40 nucleotidesB158DRAFT_1067 and B158DRAFT_1068 are separated by 32 nucleotides B158DRAFT_1064: B158DRAFT_1064 - DNA polymerase III, epsilon subunit, Proteobacterial, at 1,104,533 to 1,105,234 _1064 B158DRAFT_1065: B158DRAFT_1065 - Enoyl-CoA hydratase/carnithine racemase, at 1,105,236 to 1,105,976 _1065 B158DRAFT_1066: B158DRAFT_1066 - anion transporter, at 1,106,034 to 1,107,428 _1066 B158DRAFT_1067: B158DRAFT_1067 - hypothetical protein, at 1,107,469 to 1,107,729 _1067 B158DRAFT_1068: B158DRAFT_1068 - D-alanyl-D-alanine carboxypeptidase, at 1,107,762 to 1,108,472 _1068 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 1105.054 kb on - strand, within B158DRAFT_1064at 1105.055 kb on + strand, within B158DRAFT_1064at 1105.063 kb on - strand, within B158DRAFT_1064at 1105.063 kb on - strand, within B158DRAFT_1064at 1105.064 kb on - strand, within B158DRAFT_1064at 1105.133 kb on - strand, within B158DRAFT_1064at 1105.229 kb on + strandat 1105.229 kb on + strandat 1105.237 kb on - strandat 1105.292 kb on - strandat 1105.399 kb on - strand, within B158DRAFT_1065at 1105.399 kb on - strand, within B158DRAFT_1065at 1105.399 kb on - strand, within B158DRAFT_1065at 1105.502 kb on - strand, within B158DRAFT_1065at 1105.504 kb on - strand, within B158DRAFT_1065at 1105.504 kb on - strand, within B158DRAFT_1065at 1105.627 kb on + strand, within B158DRAFT_1065at 1105.627 kb on + strand, within B158DRAFT_1065at 1105.635 kb on - strand, within B158DRAFT_1065at 1105.639 kb on + strand, within B158DRAFT_1065at 1105.642 kb on - strand, within B158DRAFT_1065at 1105.680 kb on + strand, within B158DRAFT_1065at 1105.685 kb on + strand, within B158DRAFT_1065at 1105.688 kb on - strand, within B158DRAFT_1065at 1105.688 kb on - strand, within B158DRAFT_1065at 1105.751 kb on - strand, within B158DRAFT_1065at 1105.807 kb on - strand, within B158DRAFT_1065at 1106.031 kb on - strandat 1106.031 kb on - strandat 1106.077 kb on + strandat 1106.125 kb on - strandat 1106.125 kb on - strandat 1106.125 kb on - strandat 1106.186 kb on - strand, within B158DRAFT_1066at 1106.254 kb on + strand, within B158DRAFT_1066at 1106.402 kb on + strand, within B158DRAFT_1066at 1106.402 kb on + strand, within B158DRAFT_1066at 1106.402 kb on + strand, within B158DRAFT_1066at 1106.402 kb on + strand, within B158DRAFT_1066at 1106.402 kb on + strand, within B158DRAFT_1066at 1106.402 kb on + strand, within B158DRAFT_1066at 1106.402 kb on + strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.410 kb on - strand, within B158DRAFT_1066at 1106.490 kb on + strand, within B158DRAFT_1066at 1106.490 kb on + strand, within B158DRAFT_1066at 1106.490 kb on + strand, within B158DRAFT_1066at 1106.490 kb on + strand, within B158DRAFT_1066at 1106.498 kb on - strand, within B158DRAFT_1066at 1106.498 kb on - strand, within B158DRAFT_1066at 1106.498 kb on - strand, within B158DRAFT_1066at 1106.498 kb on - strand, within B158DRAFT_1066at 1106.498 kb on - strand, within B158DRAFT_1066at 1106.498 kb on - strand, within B158DRAFT_1066at 1106.498 kb on - strand, within B158DRAFT_1066at 1106.539 kb on + strand, within B158DRAFT_1066at 1106.547 kb on - strand, within B158DRAFT_1066at 1106.581 kb on - strand, within B158DRAFT_1066at 1106.586 kb on - strand, within B158DRAFT_1066at 1106.632 kb on + strand, within B158DRAFT_1066at 1106.641 kb on + strand, within B158DRAFT_1066at 1106.641 kb on + strand, within B158DRAFT_1066at 1106.641 kb on + strand, within B158DRAFT_1066at 1106.641 kb on + strand, within B158DRAFT_1066at 1106.641 kb on + strand, within B158DRAFT_1066at 1106.649 kb on - strand, within B158DRAFT_1066at 1106.649 kb on - strand, within B158DRAFT_1066at 1106.649 kb on - strand, within B158DRAFT_1066at 1106.649 kb on - strand, within B158DRAFT_1066at 1106.671 kb on - strand, within B158DRAFT_1066at 1106.706 kb on + strand, within B158DRAFT_1066at 1106.706 kb on + strand, within B158DRAFT_1066at 1106.706 kb on + strand, within B158DRAFT_1066at 1106.714 kb on - strand, within B158DRAFT_1066at 1106.731 kb on - strand, within B158DRAFT_1066at 1106.735 kb on + strand, within B158DRAFT_1066at 1106.743 kb on - strand, within B158DRAFT_1066at 1106.753 kb on - strand, within B158DRAFT_1066at 1106.753 kb on - strand, within B158DRAFT_1066at 1106.753 kb on - strand, within B158DRAFT_1066at 1106.787 kb on - strand, within B158DRAFT_1066at 1106.860 kb on + strand, within B158DRAFT_1066at 1106.908 kb on - strand, within B158DRAFT_1066at 1106.909 kb on - strand, within B158DRAFT_1066at 1106.949 kb on + strand, within B158DRAFT_1066at 1106.959 kb on + strand, within B158DRAFT_1066at 1106.963 kb on + strand, within B158DRAFT_1066at 1106.991 kb on + strand, within B158DRAFT_1066at 1107.059 kb on + strand, within B158DRAFT_1066at 1107.149 kb on + strand, within B158DRAFT_1066at 1107.149 kb on + strand, within B158DRAFT_1066at 1107.149 kb on + strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.157 kb on - strand, within B158DRAFT_1066at 1107.186 kb on + strand, within B158DRAFT_1066at 1107.256 kb on - strand, within B158DRAFT_1066at 1107.311 kb on - strandat 1107.334 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.344 kb on + strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.352 kb on - strandat 1107.354 kb on + strandat 1107.364 kb on + strandat 1107.364 kb on + strandat 1107.367 kb on - strandat 1107.391 kb on - strandat 1107.411 kb on - strandat 1107.417 kb on - strandat 1107.468 kb on - strandat 1107.610 kb on - strand, within B158DRAFT_1067at 1107.615 kb on + strand, within B158DRAFT_1067at 1107.621 kb on + strand, within B158DRAFT_1067at 1107.631 kb on + strand, within B158DRAFT_1067at 1107.712 kb on + strandat 1107.714 kb on - strandat 1107.736 kb on - strandat 1107.762 kb on + strandat 1107.770 kb on - strandat 1107.777 kb on - strandat 1107.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,105,054 - B158DRAFT_1064 0.74 +8.7
1,105,055 + B158DRAFT_1064 0.74 +8.0
1,105,063 - B158DRAFT_1064 0.75 +8.8
1,105,063 - B158DRAFT_1064 0.75 +8.6
1,105,064 - B158DRAFT_1064 0.76 +8.4
1,105,133 - B158DRAFT_1064 0.85 +8.3
1,105,229 + -1.9
1,105,229 + -0.1
1,105,237 - -1.0
1,105,292 - -1.0
1,105,399 - B158DRAFT_1065 0.22 -0.2
1,105,399 - B158DRAFT_1065 0.22 -1.6
1,105,399 - B158DRAFT_1065 0.22 -1.9
1,105,502 - B158DRAFT_1065 0.36 -2.5
1,105,504 - B158DRAFT_1065 0.36 -0.4
1,105,504 - B158DRAFT_1065 0.36 -0.9
1,105,627 + B158DRAFT_1065 0.53 -0.2
1,105,627 + B158DRAFT_1065 0.53 -1.8
1,105,635 - B158DRAFT_1065 0.54 -0.4
1,105,639 + B158DRAFT_1065 0.54 +1.1
1,105,642 - B158DRAFT_1065 0.55 -1.9
1,105,680 + B158DRAFT_1065 0.60 -2.7
1,105,685 + B158DRAFT_1065 0.61 -1.4
1,105,688 - B158DRAFT_1065 0.61 -1.7
1,105,688 - B158DRAFT_1065 0.61 -1.5
1,105,751 - B158DRAFT_1065 0.70 -0.9
1,105,807 - B158DRAFT_1065 0.77 -0.8
1,106,031 - -0.6
1,106,031 - -1.1
1,106,077 + +1.0
1,106,125 - -0.4
1,106,125 - -0.8
1,106,125 - -0.5
1,106,186 - B158DRAFT_1066 0.11 +0.2
1,106,254 + B158DRAFT_1066 0.16 -0.2
1,106,402 + B158DRAFT_1066 0.26 -1.0
1,106,402 + B158DRAFT_1066 0.26 -1.1
1,106,402 + B158DRAFT_1066 0.26 -0.6
1,106,402 + B158DRAFT_1066 0.26 -0.4
1,106,402 + B158DRAFT_1066 0.26 -0.6
1,106,402 + B158DRAFT_1066 0.26 +0.2
1,106,402 + B158DRAFT_1066 0.26 +0.5
1,106,410 - B158DRAFT_1066 0.27 -1.2
1,106,410 - B158DRAFT_1066 0.27 -1.6
1,106,410 - B158DRAFT_1066 0.27 -1.3
1,106,410 - B158DRAFT_1066 0.27 +1.1
1,106,410 - B158DRAFT_1066 0.27 -1.3
1,106,410 - B158DRAFT_1066 0.27 +0.8
1,106,410 - B158DRAFT_1066 0.27 -1.1
1,106,410 - B158DRAFT_1066 0.27 -1.2
1,106,410 - B158DRAFT_1066 0.27 +2.2
1,106,490 + B158DRAFT_1066 0.33 +0.3
1,106,490 + B158DRAFT_1066 0.33 -1.6
1,106,490 + B158DRAFT_1066 0.33 -1.0
1,106,490 + B158DRAFT_1066 0.33 +0.4
1,106,498 - B158DRAFT_1066 0.33 +0.0
1,106,498 - B158DRAFT_1066 0.33 -2.3
1,106,498 - B158DRAFT_1066 0.33 -0.2
1,106,498 - B158DRAFT_1066 0.33 -0.8
1,106,498 - B158DRAFT_1066 0.33 -0.5
1,106,498 - B158DRAFT_1066 0.33 -1.1
1,106,498 - B158DRAFT_1066 0.33 -1.6
1,106,539 + B158DRAFT_1066 0.36 -1.5
1,106,547 - B158DRAFT_1066 0.37 -1.6
1,106,581 - B158DRAFT_1066 0.39 -0.4
1,106,586 - B158DRAFT_1066 0.40 -0.6
1,106,632 + B158DRAFT_1066 0.43 -1.4
1,106,641 + B158DRAFT_1066 0.44 +1.2
1,106,641 + B158DRAFT_1066 0.44 +0.9
1,106,641 + B158DRAFT_1066 0.44 +0.5
1,106,641 + B158DRAFT_1066 0.44 -0.3
1,106,641 + B158DRAFT_1066 0.44 -1.0
1,106,649 - B158DRAFT_1066 0.44 +1.1
1,106,649 - B158DRAFT_1066 0.44 -1.4
1,106,649 - B158DRAFT_1066 0.44 +0.7
1,106,649 - B158DRAFT_1066 0.44 -1.3
1,106,671 - B158DRAFT_1066 0.46 -2.2
1,106,706 + B158DRAFT_1066 0.48 -1.9
1,106,706 + B158DRAFT_1066 0.48 -2.0
1,106,706 + B158DRAFT_1066 0.48 -1.3
1,106,714 - B158DRAFT_1066 0.49 -1.1
1,106,731 - B158DRAFT_1066 0.50 +1.3
1,106,735 + B158DRAFT_1066 0.50 -2.6
1,106,743 - B158DRAFT_1066 0.51 -0.5
1,106,753 - B158DRAFT_1066 0.52 +0.4
1,106,753 - B158DRAFT_1066 0.52 -1.6
1,106,753 - B158DRAFT_1066 0.52 -2.3
1,106,787 - B158DRAFT_1066 0.54 -3.1
1,106,860 + B158DRAFT_1066 0.59 +1.6
1,106,908 - B158DRAFT_1066 0.63 +0.4
1,106,909 - B158DRAFT_1066 0.63 -2.1
1,106,949 + B158DRAFT_1066 0.66 +0.5
1,106,959 + B158DRAFT_1066 0.66 +0.5
1,106,963 + B158DRAFT_1066 0.67 +1.0
1,106,991 + B158DRAFT_1066 0.69 +0.5
1,107,059 + B158DRAFT_1066 0.73 -0.2
1,107,149 + B158DRAFT_1066 0.80 -2.4
1,107,149 + B158DRAFT_1066 0.80 -1.1
1,107,149 + B158DRAFT_1066 0.80 -1.5
1,107,157 - B158DRAFT_1066 0.81 +0.3
1,107,157 - B158DRAFT_1066 0.81 -1.1
1,107,157 - B158DRAFT_1066 0.81 -2.5
1,107,157 - B158DRAFT_1066 0.81 -1.3
1,107,157 - B158DRAFT_1066 0.81 -0.7
1,107,157 - B158DRAFT_1066 0.81 +1.3
1,107,157 - B158DRAFT_1066 0.81 -0.6
1,107,157 - B158DRAFT_1066 0.81 -0.9
1,107,157 - B158DRAFT_1066 0.81 +0.8
1,107,157 - B158DRAFT_1066 0.81 -2.3
1,107,186 + B158DRAFT_1066 0.83 -1.1
1,107,256 - B158DRAFT_1066 0.88 -0.4
1,107,311 - -1.2
1,107,334 + +0.8
1,107,344 + -1.4
1,107,344 + +0.6
1,107,344 + -2.7
1,107,344 + -0.7
1,107,344 + -0.1
1,107,352 - +0.3
1,107,352 - -0.1
1,107,352 - -0.7
1,107,352 - -0.0
1,107,352 - -1.4
1,107,352 - -0.5
1,107,352 - +0.4
1,107,352 - +0.1
1,107,354 + -0.4
1,107,364 + -1.7
1,107,364 + -1.1
1,107,367 - +1.0
1,107,391 - +1.5
1,107,411 - +1.7
1,107,417 - -1.8
1,107,468 - +1.3
1,107,610 - B158DRAFT_1067 0.54 +0.3
1,107,615 + B158DRAFT_1067 0.56 +0.6
1,107,621 + B158DRAFT_1067 0.58 +0.1
1,107,631 + B158DRAFT_1067 0.62 -2.0
1,107,712 + +1.7
1,107,714 - +0.1
1,107,736 - -0.1
1,107,762 + -0.9
1,107,770 - -0.4
1,107,777 - +0.4
1,107,814 - +1.8

Or see this region's nucleotide sequence