Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0784 and B158DRAFT_0785 are separated by 11 nucleotides B158DRAFT_0785 and B158DRAFT_0786 are separated by 21 nucleotides B158DRAFT_0786 and B158DRAFT_0787 are separated by 137 nucleotides B158DRAFT_0787 and B158DRAFT_0788 are separated by 90 nucleotides
B158DRAFT_0784: B158DRAFT_0784 - transcriptional regulator, TetR family, at 788,777 to 789,370
_0784
B158DRAFT_0785: B158DRAFT_0785 - hypothetical protein, at 789,382 to 790,347
_0785
B158DRAFT_0786: B158DRAFT_0786 - orotate phosphoribosyltransferase (EC 2.4.2.10), at 790,369 to 791,016
_0786
B158DRAFT_0787: B158DRAFT_0787 - PilZ domain., at 791,154 to 791,447
_0787
B158DRAFT_0788: B158DRAFT_0788 - dimethyladenosine transferase, at 791,538 to 792,347
_0788
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 789.517 kb on - strand, within B158DRAFT_0785 at 789.527 kb on - strand, within B158DRAFT_0785 at 789.527 kb on - strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.682 kb on + strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.690 kb on - strand, within B158DRAFT_0785 at 789.746 kb on + strand, within B158DRAFT_0785 at 789.756 kb on + strand, within B158DRAFT_0785 at 789.776 kb on + strand, within B158DRAFT_0785 at 789.784 kb on - strand, within B158DRAFT_0785 at 789.789 kb on + strand, within B158DRAFT_0785 at 789.870 kb on + strand, within B158DRAFT_0785 at 789.870 kb on + strand, within B158DRAFT_0785 at 789.893 kb on + strand, within B158DRAFT_0785 at 789.901 kb on - strand, within B158DRAFT_0785 at 789.901 kb on - strand, within B158DRAFT_0785 at 790.040 kb on - strand, within B158DRAFT_0785 at 790.110 kb on - strand, within B158DRAFT_0785 at 790.126 kb on - strand, within B158DRAFT_0785 at 790.288 kb on + strand at 790.368 kb on + strand at 791.133 kb on - strand at 791.349 kb on - strand, within B158DRAFT_0787 at 791.384 kb on + strand, within B158DRAFT_0787 at 791.384 kb on + strand, within B158DRAFT_0787 at 791.384 kb on + strand, within B158DRAFT_0787 at 791.384 kb on + strand, within B158DRAFT_0787 at 791.434 kb on + strand at 791.442 kb on - strand at 791.503 kb on + strand at 791.511 kb on - strand at 791.571 kb on + strand at 791.579 kb on - strand at 791.595 kb on + strand at 791.595 kb on + strand at 791.605 kb on + strand at 791.608 kb on - strand at 791.618 kb on + strand at 791.633 kb on + strand, within B158DRAFT_0788 at 791.680 kb on + strand, within B158DRAFT_0788 at 791.703 kb on + strand, within B158DRAFT_0788 at 791.727 kb on + strand, within B158DRAFT_0788 at 791.745 kb on + strand, within B158DRAFT_0788 at 791.758 kb on - strand, within B158DRAFT_0788 at 791.763 kb on - strand, within B158DRAFT_0788 at 791.779 kb on - strand, within B158DRAFT_0788 at 791.779 kb on - strand, within B158DRAFT_0788 at 791.813 kb on - strand, within B158DRAFT_0788 at 791.832 kb on - strand, within B158DRAFT_0788 at 791.889 kb on + strand, within B158DRAFT_0788 at 791.897 kb on + strand, within B158DRAFT_0788 at 791.905 kb on - strand, within B158DRAFT_0788 at 791.915 kb on - strand, within B158DRAFT_0788 at 791.955 kb on + strand, within B158DRAFT_0788 at 791.999 kb on - strand, within B158DRAFT_0788 at 792.006 kb on + strand, within B158DRAFT_0788
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 789,517 - B158DRAFT_0785 0.14 -1.1 789,527 - B158DRAFT_0785 0.15 +0.3 789,527 - B158DRAFT_0785 0.15 -0.2 789,682 + B158DRAFT_0785 0.31 -0.5 789,682 + B158DRAFT_0785 0.31 -0.3 789,682 + B158DRAFT_0785 0.31 -0.1 789,682 + B158DRAFT_0785 0.31 +0.8 789,682 + B158DRAFT_0785 0.31 -0.0 789,682 + B158DRAFT_0785 0.31 -1.2 789,682 + B158DRAFT_0785 0.31 -0.4 789,682 + B158DRAFT_0785 0.31 -1.4 789,690 - B158DRAFT_0785 0.32 +5.0 789,690 - B158DRAFT_0785 0.32 -2.6 789,690 - B158DRAFT_0785 0.32 +1.5 789,690 - B158DRAFT_0785 0.32 -0.9 789,690 - B158DRAFT_0785 0.32 +1.1 789,690 - B158DRAFT_0785 0.32 -1.0 789,690 - B158DRAFT_0785 0.32 +1.1 789,690 - B158DRAFT_0785 0.32 +0.7 789,690 - B158DRAFT_0785 0.32 -0.3 789,690 - B158DRAFT_0785 0.32 -1.2 789,690 - B158DRAFT_0785 0.32 +0.3 789,746 + B158DRAFT_0785 0.38 -1.2 789,756 + B158DRAFT_0785 0.39 +0.1 789,776 + B158DRAFT_0785 0.41 +0.5 789,784 - B158DRAFT_0785 0.42 -0.7 789,789 + B158DRAFT_0785 0.42 -0.7 789,870 + B158DRAFT_0785 0.51 -1.6 789,870 + B158DRAFT_0785 0.51 +2.2 789,893 + B158DRAFT_0785 0.53 +1.1 789,901 - B158DRAFT_0785 0.54 -1.2 789,901 - B158DRAFT_0785 0.54 -1.3 790,040 - B158DRAFT_0785 0.68 -1.8 790,110 - B158DRAFT_0785 0.75 -0.6 790,126 - B158DRAFT_0785 0.77 -0.6 790,288 + -0.1 790,368 + -0.7 791,133 - -0.4 791,349 - B158DRAFT_0787 0.66 -1.0 791,384 + B158DRAFT_0787 0.78 -2.8 791,384 + B158DRAFT_0787 0.78 -0.4 791,384 + B158DRAFT_0787 0.78 -0.5 791,384 + B158DRAFT_0787 0.78 -0.5 791,434 + +1.0 791,442 - -2.3 791,503 + -0.7 791,511 - -1.7 791,571 + -3.0 791,579 - -0.9 791,595 + +0.5 791,595 + -0.7 791,605 + -2.9 791,608 - +1.6 791,618 + -1.0 791,633 + B158DRAFT_0788 0.12 -0.7 791,680 + B158DRAFT_0788 0.18 +0.1 791,703 + B158DRAFT_0788 0.20 -1.1 791,727 + B158DRAFT_0788 0.23 +1.9 791,745 + B158DRAFT_0788 0.26 -0.4 791,758 - B158DRAFT_0788 0.27 +0.2 791,763 - B158DRAFT_0788 0.28 -1.4 791,779 - B158DRAFT_0788 0.30 -1.6 791,779 - B158DRAFT_0788 0.30 +0.6 791,813 - B158DRAFT_0788 0.34 -0.8 791,832 - B158DRAFT_0788 0.36 +0.5 791,889 + B158DRAFT_0788 0.43 -1.1 791,897 + B158DRAFT_0788 0.44 -1.1 791,905 - B158DRAFT_0788 0.45 +1.6 791,915 - B158DRAFT_0788 0.47 +0.1 791,955 + B158DRAFT_0788 0.51 -0.1 791,999 - B158DRAFT_0788 0.57 -0.8 792,006 + B158DRAFT_0788 0.58 -1.8
Or see this region's nucleotide sequence