Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0733 and B158DRAFT_0734 are separated by 3 nucleotides B158DRAFT_0734 and B158DRAFT_0735 are separated by 9 nucleotides B158DRAFT_0735 and B158DRAFT_0736 are separated by 241 nucleotides
B158DRAFT_0733: B158DRAFT_0733 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 736,359 to 739,517
_0733
B158DRAFT_0734: B158DRAFT_0734 - RND family efflux transporter, MFP subunit, at 739,521 to 740,711
_0734
B158DRAFT_0735: B158DRAFT_0735 - transcriptional regulator, TetR family, at 740,721 to 741,293
_0735
B158DRAFT_0736: B158DRAFT_0736 - Xaa-Pro aminopeptidase, at 741,535 to 742,905
_0736
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 738.542 kb on + strand, within B158DRAFT_0733 at 738.547 kb on + strand, within B158DRAFT_0733 at 738.550 kb on - strand, within B158DRAFT_0733 at 738.550 kb on - strand, within B158DRAFT_0733 at 738.555 kb on - strand, within B158DRAFT_0733 at 738.555 kb on - strand, within B158DRAFT_0733 at 738.565 kb on + strand, within B158DRAFT_0733 at 738.570 kb on + strand, within B158DRAFT_0733 at 738.578 kb on - strand, within B158DRAFT_0733 at 738.669 kb on - strand, within B158DRAFT_0733 at 738.671 kb on - strand, within B158DRAFT_0733 at 738.691 kb on + strand, within B158DRAFT_0733 at 738.691 kb on - strand, within B158DRAFT_0733 at 738.696 kb on + strand, within B158DRAFT_0733 at 738.728 kb on - strand, within B158DRAFT_0733 at 738.752 kb on + strand, within B158DRAFT_0733 at 738.752 kb on + strand, within B158DRAFT_0733 at 738.760 kb on - strand, within B158DRAFT_0733 at 738.760 kb on - strand, within B158DRAFT_0733 at 738.760 kb on - strand, within B158DRAFT_0733 at 738.760 kb on - strand, within B158DRAFT_0733 at 738.760 kb on - strand, within B158DRAFT_0733 at 738.810 kb on + strand, within B158DRAFT_0733 at 738.810 kb on + strand, within B158DRAFT_0733 at 738.818 kb on - strand, within B158DRAFT_0733 at 738.856 kb on - strand, within B158DRAFT_0733 at 738.879 kb on - strand, within B158DRAFT_0733 at 738.952 kb on - strand, within B158DRAFT_0733 at 738.994 kb on + strand, within B158DRAFT_0733 at 739.058 kb on + strand, within B158DRAFT_0733 at 739.058 kb on + strand, within B158DRAFT_0733 at 739.123 kb on + strand, within B158DRAFT_0733 at 739.131 kb on - strand, within B158DRAFT_0733 at 739.131 kb on - strand, within B158DRAFT_0733 at 739.149 kb on - strand, within B158DRAFT_0733 at 739.151 kb on + strand, within B158DRAFT_0733 at 739.156 kb on + strand, within B158DRAFT_0733 at 739.156 kb on + strand, within B158DRAFT_0733 at 739.159 kb on - strand, within B158DRAFT_0733 at 739.169 kb on - strand, within B158DRAFT_0733 at 739.169 kb on - strand, within B158DRAFT_0733 at 739.306 kb on + strand at 739.337 kb on - strand at 739.407 kb on - strand at 739.411 kb on + strand at 739.419 kb on - strand at 739.453 kb on - strand at 739.453 kb on - strand at 739.472 kb on + strand at 739.513 kb on + strand at 739.531 kb on + strand at 739.531 kb on + strand at 739.646 kb on - strand, within B158DRAFT_0734 at 739.672 kb on - strand, within B158DRAFT_0734 at 739.715 kb on + strand, within B158DRAFT_0734 at 739.762 kb on + strand, within B158DRAFT_0734 at 739.788 kb on - strand, within B158DRAFT_0734 at 739.832 kb on + strand, within B158DRAFT_0734 at 739.878 kb on + strand, within B158DRAFT_0734 at 739.915 kb on + strand, within B158DRAFT_0734 at 739.995 kb on - strand, within B158DRAFT_0734 at 740.060 kb on + strand, within B158DRAFT_0734 at 740.060 kb on + strand, within B158DRAFT_0734 at 740.060 kb on + strand, within B158DRAFT_0734 at 740.068 kb on - strand, within B158DRAFT_0734 at 740.068 kb on - strand, within B158DRAFT_0734 at 740.068 kb on - strand, within B158DRAFT_0734 at 740.068 kb on - strand, within B158DRAFT_0734 at 740.068 kb on - strand, within B158DRAFT_0734 at 740.068 kb on - strand, within B158DRAFT_0734 at 740.068 kb on - strand, within B158DRAFT_0734 at 740.083 kb on - strand, within B158DRAFT_0734 at 740.125 kb on - strand, within B158DRAFT_0734 at 740.192 kb on + strand, within B158DRAFT_0734 at 740.193 kb on - strand, within B158DRAFT_0734 at 740.193 kb on - strand, within B158DRAFT_0734 at 740.197 kb on + strand, within B158DRAFT_0734 at 740.200 kb on - strand, within B158DRAFT_0734 at 740.205 kb on - strand, within B158DRAFT_0734 at 740.205 kb on - strand, within B158DRAFT_0734 at 740.218 kb on + strand, within B158DRAFT_0734 at 740.218 kb on + strand, within B158DRAFT_0734 at 740.218 kb on + strand, within B158DRAFT_0734 at 740.218 kb on + strand, within B158DRAFT_0734 at 740.218 kb on + strand, within B158DRAFT_0734 at 740.218 kb on + strand, within B158DRAFT_0734 at 740.218 kb on + strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.226 kb on - strand, within B158DRAFT_0734 at 740.286 kb on - strand, within B158DRAFT_0734 at 740.288 kb on + strand, within B158DRAFT_0734 at 740.288 kb on + strand, within B158DRAFT_0734 at 740.288 kb on + strand, within B158DRAFT_0734 at 740.290 kb on + strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.296 kb on - strand, within B158DRAFT_0734 at 740.308 kb on - strand, within B158DRAFT_0734 at 740.332 kb on + strand, within B158DRAFT_0734 at 740.374 kb on + strand, within B158DRAFT_0734 at 740.374 kb on + strand, within B158DRAFT_0734 at 740.461 kb on - strand, within B158DRAFT_0734 at 740.496 kb on - strand, within B158DRAFT_0734 at 740.505 kb on - strand, within B158DRAFT_0734 at 740.512 kb on + strand, within B158DRAFT_0734 at 740.512 kb on + strand, within B158DRAFT_0734 at 740.512 kb on + strand, within B158DRAFT_0734 at 740.512 kb on + strand, within B158DRAFT_0734 at 740.512 kb on + strand, within B158DRAFT_0734 at 740.512 kb on + strand, within B158DRAFT_0734 at 740.512 kb on + strand, within B158DRAFT_0734 at 740.520 kb on - strand, within B158DRAFT_0734 at 740.520 kb on - strand, within B158DRAFT_0734 at 740.520 kb on - strand, within B158DRAFT_0734 at 740.530 kb on - strand, within B158DRAFT_0734 at 740.551 kb on + strand, within B158DRAFT_0734 at 740.556 kb on + strand, within B158DRAFT_0734 at 740.559 kb on - strand, within B158DRAFT_0734 at 740.566 kb on + strand, within B158DRAFT_0734 at 740.566 kb on + strand, within B158DRAFT_0734 at 740.566 kb on + strand, within B158DRAFT_0734 at 740.566 kb on + strand, within B158DRAFT_0734 at 740.566 kb on - strand, within B158DRAFT_0734 at 740.574 kb on - strand, within B158DRAFT_0734 at 740.574 kb on - strand, within B158DRAFT_0734 at 740.574 kb on - strand, within B158DRAFT_0734 at 740.574 kb on - strand, within B158DRAFT_0734 at 740.574 kb on - strand, within B158DRAFT_0734 at 740.601 kb on + strand at 740.612 kb on + strand at 740.651 kb on + strand at 740.659 kb on - strand at 740.659 kb on - strand at 740.659 kb on - strand at 740.707 kb on - strand at 740.720 kb on + strand at 740.721 kb on - strand at 740.726 kb on + strand at 740.728 kb on + strand at 740.781 kb on - strand, within B158DRAFT_0735 at 740.916 kb on - strand, within B158DRAFT_0735 at 740.935 kb on - strand, within B158DRAFT_0735 at 740.955 kb on + strand, within B158DRAFT_0735 at 740.955 kb on + strand, within B158DRAFT_0735 at 740.955 kb on + strand, within B158DRAFT_0735 at 740.963 kb on - strand, within B158DRAFT_0735 at 740.963 kb on - strand, within B158DRAFT_0735 at 740.963 kb on - strand, within B158DRAFT_0735 at 740.982 kb on + strand, within B158DRAFT_0735 at 740.988 kb on - strand, within B158DRAFT_0735 at 741.073 kb on - strand, within B158DRAFT_0735 at 741.179 kb on - strand, within B158DRAFT_0735 at 741.202 kb on + strand, within B158DRAFT_0735 at 741.218 kb on + strand, within B158DRAFT_0735 at 741.218 kb on + strand, within B158DRAFT_0735 at 741.218 kb on + strand, within B158DRAFT_0735 at 741.218 kb on + strand, within B158DRAFT_0735 at 741.218 kb on + strand, within B158DRAFT_0735 at 741.221 kb on + strand, within B158DRAFT_0735 at 741.223 kb on + strand, within B158DRAFT_0735 at 741.223 kb on + strand, within B158DRAFT_0735 at 741.226 kb on - strand, within B158DRAFT_0735 at 741.231 kb on + strand, within B158DRAFT_0735 at 741.231 kb on - strand, within B158DRAFT_0735 at 741.236 kb on + strand at 741.245 kb on - strand at 741.283 kb on + strand at 741.291 kb on - strand at 741.291 kb on - strand at 741.291 kb on - strand at 741.341 kb on - strand at 741.362 kb on - strand at 741.398 kb on + strand at 741.398 kb on + strand at 741.406 kb on - strand at 741.518 kb on - strand at 741.583 kb on - strand at 741.620 kb on + strand at 741.620 kb on + strand at 741.620 kb on + strand at 741.620 kb on + strand at 741.625 kb on + strand at 741.628 kb on - strand at 741.628 kb on - strand at 741.628 kb on - strand at 741.641 kb on + strand at 741.642 kb on + strand at 741.642 kb on + strand at 741.649 kb on - strand at 741.649 kb on - strand at 741.649 kb on - strand at 741.649 kb on - strand at 741.649 kb on - strand at 741.649 kb on - strand at 741.649 kb on - strand at 741.649 kb on - strand at 741.672 kb on + strand, within B158DRAFT_0736 at 741.672 kb on + strand, within B158DRAFT_0736 at 741.672 kb on + strand, within B158DRAFT_0736 at 741.675 kb on - strand, within B158DRAFT_0736 at 741.677 kb on + strand, within B158DRAFT_0736 at 741.677 kb on + strand, within B158DRAFT_0736 at 741.680 kb on - strand, within B158DRAFT_0736 at 741.685 kb on - strand, within B158DRAFT_0736
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 738,542 + B158DRAFT_0733 0.69 -1.1 738,547 + B158DRAFT_0733 0.69 -2.0 738,550 - B158DRAFT_0733 0.69 -0.4 738,550 - B158DRAFT_0733 0.69 -0.8 738,555 - B158DRAFT_0733 0.70 +1.7 738,555 - B158DRAFT_0733 0.70 -1.0 738,565 + B158DRAFT_0733 0.70 +4.2 738,570 + B158DRAFT_0733 0.70 -0.4 738,578 - B158DRAFT_0733 0.70 +1.1 738,669 - B158DRAFT_0733 0.73 +0.2 738,671 - B158DRAFT_0733 0.73 +0.7 738,691 + B158DRAFT_0733 0.74 -0.9 738,691 - B158DRAFT_0733 0.74 +0.9 738,696 + B158DRAFT_0733 0.74 -0.1 738,728 - B158DRAFT_0733 0.75 -0.7 738,752 + B158DRAFT_0733 0.76 -0.0 738,752 + B158DRAFT_0733 0.76 -2.6 738,760 - B158DRAFT_0733 0.76 -1.0 738,760 - B158DRAFT_0733 0.76 +1.3 738,760 - B158DRAFT_0733 0.76 -1.0 738,760 - B158DRAFT_0733 0.76 -0.5 738,760 - B158DRAFT_0733 0.76 -2.7 738,810 + B158DRAFT_0733 0.78 -1.2 738,810 + B158DRAFT_0733 0.78 +1.7 738,818 - B158DRAFT_0733 0.78 -0.8 738,856 - B158DRAFT_0733 0.79 +1.0 738,879 - B158DRAFT_0733 0.80 +0.8 738,952 - B158DRAFT_0733 0.82 +0.9 738,994 + B158DRAFT_0733 0.83 +4.4 739,058 + B158DRAFT_0733 0.85 +2.4 739,058 + B158DRAFT_0733 0.85 +1.3 739,123 + B158DRAFT_0733 0.87 +0.8 739,131 - B158DRAFT_0733 0.88 +0.2 739,131 - B158DRAFT_0733 0.88 -0.5 739,149 - B158DRAFT_0733 0.88 -1.6 739,151 + B158DRAFT_0733 0.88 +1.5 739,156 + B158DRAFT_0733 0.89 -0.1 739,156 + B158DRAFT_0733 0.89 +0.9 739,159 - B158DRAFT_0733 0.89 -1.0 739,169 - B158DRAFT_0733 0.89 -0.8 739,169 - B158DRAFT_0733 0.89 -0.7 739,306 + -1.0 739,337 - -2.0 739,407 - +0.0 739,411 + -0.5 739,419 - -0.7 739,453 - -1.2 739,453 - +0.6 739,472 + +0.1 739,513 + -1.6 739,531 + -0.1 739,531 + +0.5 739,646 - B158DRAFT_0734 0.10 -0.1 739,672 - B158DRAFT_0734 0.13 -0.1 739,715 + B158DRAFT_0734 0.16 +0.0 739,762 + B158DRAFT_0734 0.20 +1.9 739,788 - B158DRAFT_0734 0.22 -2.0 739,832 + B158DRAFT_0734 0.26 -0.6 739,878 + B158DRAFT_0734 0.30 -0.7 739,915 + B158DRAFT_0734 0.33 +1.5 739,995 - B158DRAFT_0734 0.40 -0.9 740,060 + B158DRAFT_0734 0.45 -0.7 740,060 + B158DRAFT_0734 0.45 +0.0 740,060 + B158DRAFT_0734 0.45 -3.5 740,068 - B158DRAFT_0734 0.46 -0.8 740,068 - B158DRAFT_0734 0.46 -0.9 740,068 - B158DRAFT_0734 0.46 -0.4 740,068 - B158DRAFT_0734 0.46 +0.5 740,068 - B158DRAFT_0734 0.46 -0.6 740,068 - B158DRAFT_0734 0.46 -0.1 740,068 - B158DRAFT_0734 0.46 -0.5 740,083 - B158DRAFT_0734 0.47 -0.7 740,125 - B158DRAFT_0734 0.51 -2.5 740,192 + B158DRAFT_0734 0.56 -0.7 740,193 - B158DRAFT_0734 0.56 -0.5 740,193 - B158DRAFT_0734 0.56 +0.4 740,197 + B158DRAFT_0734 0.57 -1.5 740,200 - B158DRAFT_0734 0.57 -0.7 740,205 - B158DRAFT_0734 0.57 -0.5 740,205 - B158DRAFT_0734 0.57 -0.4 740,218 + B158DRAFT_0734 0.59 -3.2 740,218 + B158DRAFT_0734 0.59 -0.0 740,218 + B158DRAFT_0734 0.59 -1.8 740,218 + B158DRAFT_0734 0.59 -0.7 740,218 + B158DRAFT_0734 0.59 -0.9 740,218 + B158DRAFT_0734 0.59 -0.8 740,218 + B158DRAFT_0734 0.59 -0.7 740,226 - B158DRAFT_0734 0.59 -1.2 740,226 - B158DRAFT_0734 0.59 -0.9 740,226 - B158DRAFT_0734 0.59 -0.5 740,226 - B158DRAFT_0734 0.59 +0.1 740,226 - B158DRAFT_0734 0.59 -0.9 740,226 - B158DRAFT_0734 0.59 +0.7 740,226 - B158DRAFT_0734 0.59 -1.0 740,226 - B158DRAFT_0734 0.59 -0.9 740,226 - B158DRAFT_0734 0.59 -1.3 740,226 - B158DRAFT_0734 0.59 +0.4 740,226 - B158DRAFT_0734 0.59 -2.3 740,286 - B158DRAFT_0734 0.64 +1.3 740,288 + B158DRAFT_0734 0.64 -1.0 740,288 + B158DRAFT_0734 0.64 -1.2 740,288 + B158DRAFT_0734 0.64 -2.1 740,290 + B158DRAFT_0734 0.65 -2.8 740,296 - B158DRAFT_0734 0.65 -0.5 740,296 - B158DRAFT_0734 0.65 +1.0 740,296 - B158DRAFT_0734 0.65 +0.2 740,296 - B158DRAFT_0734 0.65 +0.2 740,296 - B158DRAFT_0734 0.65 +2.0 740,296 - B158DRAFT_0734 0.65 +0.7 740,296 - B158DRAFT_0734 0.65 +0.7 740,296 - B158DRAFT_0734 0.65 -2.0 740,296 - B158DRAFT_0734 0.65 -0.7 740,308 - B158DRAFT_0734 0.66 -1.2 740,332 + B158DRAFT_0734 0.68 -0.8 740,374 + B158DRAFT_0734 0.72 -0.8 740,374 + B158DRAFT_0734 0.72 -0.5 740,461 - B158DRAFT_0734 0.79 -0.9 740,496 - B158DRAFT_0734 0.82 +0.5 740,505 - B158DRAFT_0734 0.83 -1.4 740,512 + B158DRAFT_0734 0.83 -0.6 740,512 + B158DRAFT_0734 0.83 +0.7 740,512 + B158DRAFT_0734 0.83 -3.6 740,512 + B158DRAFT_0734 0.83 -1.8 740,512 + B158DRAFT_0734 0.83 -0.7 740,512 + B158DRAFT_0734 0.83 -1.8 740,512 + B158DRAFT_0734 0.83 +0.6 740,520 - B158DRAFT_0734 0.84 -0.0 740,520 - B158DRAFT_0734 0.84 -1.6 740,520 - B158DRAFT_0734 0.84 -1.0 740,530 - B158DRAFT_0734 0.85 -0.5 740,551 + B158DRAFT_0734 0.86 -1.2 740,556 + B158DRAFT_0734 0.87 +0.1 740,559 - B158DRAFT_0734 0.87 -1.6 740,566 + B158DRAFT_0734 0.88 -1.9 740,566 + B158DRAFT_0734 0.88 -1.5 740,566 + B158DRAFT_0734 0.88 +0.2 740,566 + B158DRAFT_0734 0.88 -1.3 740,566 - B158DRAFT_0734 0.88 -0.2 740,574 - B158DRAFT_0734 0.88 +0.5 740,574 - B158DRAFT_0734 0.88 -0.8 740,574 - B158DRAFT_0734 0.88 -1.8 740,574 - B158DRAFT_0734 0.88 -1.5 740,574 - B158DRAFT_0734 0.88 +1.8 740,601 + -1.3 740,612 + +0.9 740,651 + -1.3 740,659 - -0.2 740,659 - -0.3 740,659 - +0.8 740,707 - -0.9 740,720 + +0.2 740,721 - +0.1 740,726 + -1.4 740,728 + -0.6 740,781 - B158DRAFT_0735 0.10 -1.0 740,916 - B158DRAFT_0735 0.34 -2.2 740,935 - B158DRAFT_0735 0.37 +0.0 740,955 + B158DRAFT_0735 0.41 +1.4 740,955 + B158DRAFT_0735 0.41 -1.2 740,955 + B158DRAFT_0735 0.41 +1.3 740,963 - B158DRAFT_0735 0.42 -0.9 740,963 - B158DRAFT_0735 0.42 -1.2 740,963 - B158DRAFT_0735 0.42 -0.3 740,982 + B158DRAFT_0735 0.46 -0.5 740,988 - B158DRAFT_0735 0.47 -0.3 741,073 - B158DRAFT_0735 0.61 -0.9 741,179 - B158DRAFT_0735 0.80 +1.9 741,202 + B158DRAFT_0735 0.84 +0.0 741,218 + B158DRAFT_0735 0.87 -1.6 741,218 + B158DRAFT_0735 0.87 -1.8 741,218 + B158DRAFT_0735 0.87 -1.7 741,218 + B158DRAFT_0735 0.87 +0.1 741,218 + B158DRAFT_0735 0.87 +0.9 741,221 + B158DRAFT_0735 0.87 -0.7 741,223 + B158DRAFT_0735 0.88 +0.5 741,223 + B158DRAFT_0735 0.88 +0.6 741,226 - B158DRAFT_0735 0.88 -0.6 741,231 + B158DRAFT_0735 0.89 -0.7 741,231 - B158DRAFT_0735 0.89 +0.3 741,236 + +0.7 741,245 - +1.1 741,283 + -1.5 741,291 - -1.6 741,291 - +2.2 741,291 - -0.1 741,341 - -0.8 741,362 - -0.7 741,398 + -1.3 741,398 + +0.8 741,406 - +0.5 741,518 - -1.4 741,583 - +0.6 741,620 + -0.3 741,620 + -1.0 741,620 + -0.8 741,620 + -0.7 741,625 + -0.6 741,628 - -1.3 741,628 - -0.9 741,628 - -1.1 741,641 + -0.9 741,642 + -0.5 741,642 + +0.4 741,649 - -0.6 741,649 - +0.7 741,649 - -0.2 741,649 - -3.1 741,649 - -0.7 741,649 - +0.2 741,649 - +0.8 741,649 - -0.2 741,672 + B158DRAFT_0736 0.10 +0.3 741,672 + B158DRAFT_0736 0.10 -2.9 741,672 + B158DRAFT_0736 0.10 -1.0 741,675 - B158DRAFT_0736 0.10 -1.1 741,677 + B158DRAFT_0736 0.10 -1.2 741,677 + B158DRAFT_0736 0.10 -2.4 741,680 - B158DRAFT_0736 0.11 -0.5 741,685 - B158DRAFT_0736 0.11 -0.9
Or see this region's nucleotide sequence