Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0555 and B158DRAFT_0556 are separated by 31 nucleotides B158DRAFT_0556 and B158DRAFT_0557 are separated by 9 nucleotides B158DRAFT_0557 and B158DRAFT_0558 are separated by 202 nucleotides B158DRAFT_0558 and B158DRAFT_0559 are separated by 11 nucleotides
B158DRAFT_0555: B158DRAFT_0555 - prolipoprotein diacylglyceryl transferase, at 560,450 to 561,238
_0555
B158DRAFT_0556: B158DRAFT_0556 - thymidylate synthase (EC 2.1.1.45), at 561,270 to 562,064
_0556
B158DRAFT_0557: B158DRAFT_0557 - Dihydrofolate reductase, at 562,074 to 562,586
_0557
B158DRAFT_0558: B158DRAFT_0558 - sortase, marine proteobacterial type, at 562,789 to 563,358
_0558
B158DRAFT_0559: B158DRAFT_0559 - marine proteobacterial sortase target protein, at 563,370 to 565,430
_0559
Position (kb) 562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 561.251 kb on + strand at 561.251 kb on + strand at 561.268 kb on + strand at 562.606 kb on - strand at 562.608 kb on + strand at 562.616 kb on - strand at 562.700 kb on + strand at 562.816 kb on + strand at 562.816 kb on + strand at 562.841 kb on - strand at 562.858 kb on - strand, within B158DRAFT_0558 at 562.883 kb on + strand, within B158DRAFT_0558 at 562.891 kb on - strand, within B158DRAFT_0558 at 562.891 kb on - strand, within B158DRAFT_0558 at 562.891 kb on - strand, within B158DRAFT_0558 at 562.953 kb on + strand, within B158DRAFT_0558 at 562.958 kb on + strand, within B158DRAFT_0558 at 562.958 kb on + strand, within B158DRAFT_0558 at 562.961 kb on - strand, within B158DRAFT_0558 at 562.961 kb on - strand, within B158DRAFT_0558 at 562.988 kb on + strand, within B158DRAFT_0558 at 562.988 kb on + strand, within B158DRAFT_0558 at 562.996 kb on - strand, within B158DRAFT_0558 at 563.141 kb on - strand, within B158DRAFT_0558 at 563.176 kb on + strand, within B158DRAFT_0558 at 563.183 kb on + strand, within B158DRAFT_0558 at 563.184 kb on - strand, within B158DRAFT_0558 at 563.188 kb on + strand, within B158DRAFT_0558 at 563.188 kb on + strand, within B158DRAFT_0558 at 563.196 kb on - strand, within B158DRAFT_0558 at 563.197 kb on - strand, within B158DRAFT_0558 at 563.198 kb on - strand, within B158DRAFT_0558 at 563.214 kb on + strand, within B158DRAFT_0558 at 563.226 kb on + strand, within B158DRAFT_0558 at 563.258 kb on + strand, within B158DRAFT_0558 at 563.258 kb on + strand, within B158DRAFT_0558 at 563.258 kb on + strand, within B158DRAFT_0558 at 563.266 kb on - strand, within B158DRAFT_0558 at 563.266 kb on - strand, within B158DRAFT_0558 at 563.270 kb on + strand, within B158DRAFT_0558 at 563.270 kb on + strand, within B158DRAFT_0558 at 563.304 kb on + strand at 563.304 kb on + strand at 563.311 kb on + strand at 563.311 kb on + strand at 563.319 kb on - strand at 563.319 kb on - strand at 563.324 kb on - strand at 563.381 kb on - strand at 563.441 kb on - strand at 563.467 kb on + strand at 563.472 kb on + strand at 563.475 kb on - strand at 563.475 kb on - strand at 563.482 kb on - strand at 563.487 kb on - strand at 563.515 kb on + strand at 563.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 561,251 + +0.2 561,251 + -0.9 561,268 + +3.5 562,606 - -0.4 562,608 + -1.2 562,616 - -0.9 562,700 + -0.9 562,816 + -1.1 562,816 + -1.5 562,841 - -2.5 562,858 - B158DRAFT_0558 0.12 -2.3 562,883 + B158DRAFT_0558 0.16 -0.5 562,891 - B158DRAFT_0558 0.18 -0.3 562,891 - B158DRAFT_0558 0.18 -1.1 562,891 - B158DRAFT_0558 0.18 +0.5 562,953 + B158DRAFT_0558 0.29 +1.9 562,958 + B158DRAFT_0558 0.30 -0.6 562,958 + B158DRAFT_0558 0.30 -1.6 562,961 - B158DRAFT_0558 0.30 -1.0 562,961 - B158DRAFT_0558 0.30 -0.1 562,988 + B158DRAFT_0558 0.35 -0.7 562,988 + B158DRAFT_0558 0.35 -1.5 562,996 - B158DRAFT_0558 0.36 -0.3 563,141 - B158DRAFT_0558 0.62 -1.8 563,176 + B158DRAFT_0558 0.68 -1.8 563,183 + B158DRAFT_0558 0.69 -1.8 563,184 - B158DRAFT_0558 0.69 -1.0 563,188 + B158DRAFT_0558 0.70 -0.2 563,188 + B158DRAFT_0558 0.70 -0.9 563,196 - B158DRAFT_0558 0.71 -0.3 563,197 - B158DRAFT_0558 0.72 +1.6 563,198 - B158DRAFT_0558 0.72 -1.0 563,214 + B158DRAFT_0558 0.75 -1.7 563,226 + B158DRAFT_0558 0.77 -0.9 563,258 + B158DRAFT_0558 0.82 +0.5 563,258 + B158DRAFT_0558 0.82 +0.9 563,258 + B158DRAFT_0558 0.82 +1.7 563,266 - B158DRAFT_0558 0.84 -0.7 563,266 - B158DRAFT_0558 0.84 -1.7 563,270 + B158DRAFT_0558 0.84 -0.5 563,270 + B158DRAFT_0558 0.84 -2.2 563,304 + -1.1 563,304 + -0.9 563,311 + -0.4 563,311 + +0.0 563,319 - -1.8 563,319 - -0.6 563,324 - +0.7 563,381 - -0.4 563,441 - -1.6 563,467 + -2.0 563,472 + -1.5 563,475 - +1.2 563,475 - -2.2 563,482 - +2.5 563,487 - -1.5 563,515 + -2.9 563,572 + -0.4
Or see this region's nucleotide sequence