Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0482 and B158DRAFT_0483 are separated by 252 nucleotides B158DRAFT_0483 and B158DRAFT_0484 are separated by 34 nucleotides B158DRAFT_0484 and B158DRAFT_0485 are separated by 79 nucleotides B158DRAFT_0485 and B158DRAFT_0486 are separated by 0 nucleotides
B158DRAFT_0482: B158DRAFT_0482 - hypothetical protein, at 484,500 to 485,147
_0482
B158DRAFT_0483: B158DRAFT_0483 - hypothetical protein, at 485,400 to 485,768
_0483
B158DRAFT_0484: B158DRAFT_0484 - Protein of unknown function (DUF3478)., at 485,803 to 486,171
_0484
B158DRAFT_0485: B158DRAFT_0485 - Periplasmic protease, at 486,251 to 486,607
_0485
B158DRAFT_0486: B158DRAFT_0486 - iron-sulfur cluster binding protein, putative, at 486,608 to 487,756
_0486
Position (kb) 485
486
487 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 484.825 kb on + strand, within B158DRAFT_0482 at 484.902 kb on + strand, within B158DRAFT_0482 at 485.012 kb on - strand, within B158DRAFT_0482 at 485.013 kb on - strand, within B158DRAFT_0482 at 485.038 kb on - strand, within B158DRAFT_0482 at 485.134 kb on + strand at 485.217 kb on + strand at 485.305 kb on - strand at 485.394 kb on + strand at 485.495 kb on - strand, within B158DRAFT_0483 at 485.526 kb on - strand, within B158DRAFT_0483 at 485.533 kb on + strand, within B158DRAFT_0483 at 485.536 kb on - strand, within B158DRAFT_0483 at 485.572 kb on - strand, within B158DRAFT_0483 at 485.599 kb on - strand, within B158DRAFT_0483 at 485.693 kb on - strand, within B158DRAFT_0483 at 485.801 kb on - strand at 486.018 kb on + strand, within B158DRAFT_0484 at 486.018 kb on + strand, within B158DRAFT_0484 at 486.018 kb on + strand, within B158DRAFT_0484 at 486.026 kb on - strand, within B158DRAFT_0484 at 486.386 kb on + strand, within B158DRAFT_0485 at 486.386 kb on + strand, within B158DRAFT_0485 at 486.431 kb on - strand, within B158DRAFT_0485 at 486.443 kb on - strand, within B158DRAFT_0485 at 486.477 kb on + strand, within B158DRAFT_0485 at 486.499 kb on - strand, within B158DRAFT_0485 at 486.558 kb on - strand, within B158DRAFT_0485 at 486.762 kb on + strand, within B158DRAFT_0486 at 486.855 kb on + strand, within B158DRAFT_0486 at 486.889 kb on - strand, within B158DRAFT_0486 at 486.889 kb on - strand, within B158DRAFT_0486 at 486.897 kb on - strand, within B158DRAFT_0486 at 486.902 kb on - strand, within B158DRAFT_0486 at 486.926 kb on - strand, within B158DRAFT_0486 at 486.926 kb on - strand, within B158DRAFT_0486 at 486.984 kb on + strand, within B158DRAFT_0486 at 487.044 kb on - strand, within B158DRAFT_0486 at 487.141 kb on + strand, within B158DRAFT_0486 at 487.141 kb on + strand, within B158DRAFT_0486 at 487.149 kb on - strand, within B158DRAFT_0486
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 484,825 + B158DRAFT_0482 0.50 -0.4 484,902 + B158DRAFT_0482 0.62 +0.1 485,012 - B158DRAFT_0482 0.79 -0.7 485,013 - B158DRAFT_0482 0.79 -1.4 485,038 - B158DRAFT_0482 0.83 -2.4 485,134 + -1.0 485,217 + -2.2 485,305 - +0.3 485,394 + -1.4 485,495 - B158DRAFT_0483 0.26 -1.6 485,526 - B158DRAFT_0483 0.34 -0.9 485,533 + B158DRAFT_0483 0.36 -0.9 485,536 - B158DRAFT_0483 0.37 -1.1 485,572 - B158DRAFT_0483 0.47 +2.1 485,599 - B158DRAFT_0483 0.54 -0.4 485,693 - B158DRAFT_0483 0.79 +3.2 485,801 - -1.0 486,018 + B158DRAFT_0484 0.58 -0.5 486,018 + B158DRAFT_0484 0.58 +0.1 486,018 + B158DRAFT_0484 0.58 -1.4 486,026 - B158DRAFT_0484 0.60 -0.8 486,386 + B158DRAFT_0485 0.38 -0.0 486,386 + B158DRAFT_0485 0.38 -1.5 486,431 - B158DRAFT_0485 0.50 -0.6 486,443 - B158DRAFT_0485 0.54 +0.4 486,477 + B158DRAFT_0485 0.63 -1.3 486,499 - B158DRAFT_0485 0.69 -1.3 486,558 - B158DRAFT_0485 0.86 +0.8 486,762 + B158DRAFT_0486 0.13 +0.4 486,855 + B158DRAFT_0486 0.21 -1.3 486,889 - B158DRAFT_0486 0.24 +0.3 486,889 - B158DRAFT_0486 0.24 +0.0 486,897 - B158DRAFT_0486 0.25 +0.6 486,902 - B158DRAFT_0486 0.26 +0.1 486,926 - B158DRAFT_0486 0.28 -2.6 486,926 - B158DRAFT_0486 0.28 +0.2 486,984 + B158DRAFT_0486 0.33 -0.9 487,044 - B158DRAFT_0486 0.38 -0.0 487,141 + B158DRAFT_0486 0.46 -1.2 487,141 + B158DRAFT_0486 0.46 -1.4 487,149 - B158DRAFT_0486 0.47 -0.3
Or see this region's nucleotide sequence