Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0369 and B158DRAFT_0370 are separated by 20 nucleotides B158DRAFT_0370 and B158DRAFT_0371 overlap by 4 nucleotides B158DRAFT_0371 and B158DRAFT_0372 are separated by 30 nucleotides B158DRAFT_0372 and B158DRAFT_0373 are separated by 14 nucleotides
B158DRAFT_0369: B158DRAFT_0369 - LSU ribosomal protein L34P, at 374,630 to 374,764
_0369
B158DRAFT_0370: B158DRAFT_0370 - ribonuclease P protein component, eubacterial, at 374,785 to 375,168
_0370
B158DRAFT_0371: B158DRAFT_0371 - conserved hypothetical protein YidD, at 375,165 to 375,389
_0371
B158DRAFT_0372: B158DRAFT_0372 - membrane protein insertase, YidC/Oxa1 family, N-terminal domain, at 375,420 to 377,027
_0372
B158DRAFT_0373: B158DRAFT_0373 - tRNA modification GTPase TrmE, at 377,042 to 378,400
_0373
Position (kb) 375
376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 374.428 kb on + strand at 374.428 kb on + strand at 374.434 kb on + strand at 374.436 kb on - strand at 374.441 kb on - strand at 375.287 kb on + strand, within B158DRAFT_0371 at 377.042 kb on - strand at 377.046 kb on + strand at 377.247 kb on - strand, within B158DRAFT_0373 at 377.264 kb on + strand, within B158DRAFT_0373 at 377.264 kb on + strand, within B158DRAFT_0373 at 377.272 kb on - strand, within B158DRAFT_0373 at 377.272 kb on - strand, within B158DRAFT_0373 at 377.281 kb on - strand, within B158DRAFT_0373 at 377.327 kb on - strand, within B158DRAFT_0373 at 377.340 kb on - strand, within B158DRAFT_0373 at 377.350 kb on - strand, within B158DRAFT_0373 at 377.413 kb on + strand, within B158DRAFT_0373 at 377.453 kb on - strand, within B158DRAFT_0373 at 377.602 kb on + strand, within B158DRAFT_0373 at 377.683 kb on + strand, within B158DRAFT_0373 at 377.684 kb on + strand, within B158DRAFT_0373 at 377.685 kb on + strand, within B158DRAFT_0373 at 377.693 kb on - strand, within B158DRAFT_0373 at 377.693 kb on - strand, within B158DRAFT_0373 at 377.718 kb on - strand, within B158DRAFT_0373 at 377.724 kb on + strand, within B158DRAFT_0373 at 377.734 kb on + strand, within B158DRAFT_0373 at 377.750 kb on + strand, within B158DRAFT_0373 at 377.750 kb on + strand, within B158DRAFT_0373 at 377.758 kb on - strand, within B158DRAFT_0373 at 377.758 kb on - strand, within B158DRAFT_0373 at 377.758 kb on - strand, within B158DRAFT_0373
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 374,428 + +0.5 374,428 + -2.0 374,434 + +2.5 374,436 - -1.0 374,441 - -0.0 375,287 + B158DRAFT_0371 0.54 +2.9 377,042 - +3.9 377,046 + +3.2 377,247 - B158DRAFT_0373 0.15 +3.6 377,264 + B158DRAFT_0373 0.16 +3.6 377,264 + B158DRAFT_0373 0.16 +4.0 377,272 - B158DRAFT_0373 0.17 +3.7 377,272 - B158DRAFT_0373 0.17 +4.6 377,281 - B158DRAFT_0373 0.18 +3.5 377,327 - B158DRAFT_0373 0.21 +3.5 377,340 - B158DRAFT_0373 0.22 +2.9 377,350 - B158DRAFT_0373 0.23 +4.1 377,413 + B158DRAFT_0373 0.27 +3.7 377,453 - B158DRAFT_0373 0.30 +3.1 377,602 + B158DRAFT_0373 0.41 +3.8 377,683 + B158DRAFT_0373 0.47 +3.6 377,684 + B158DRAFT_0373 0.47 +3.1 377,685 + B158DRAFT_0373 0.47 +3.9 377,693 - B158DRAFT_0373 0.48 +5.0 377,693 - B158DRAFT_0373 0.48 +3.7 377,718 - B158DRAFT_0373 0.50 +4.2 377,724 + B158DRAFT_0373 0.50 +3.4 377,734 + B158DRAFT_0373 0.51 +2.9 377,750 + B158DRAFT_0373 0.52 +4.0 377,750 + B158DRAFT_0373 0.52 +5.5 377,758 - B158DRAFT_0373 0.53 +4.7 377,758 - B158DRAFT_0373 0.53 +3.0 377,758 - B158DRAFT_0373 0.53 +3.8
Or see this region's nucleotide sequence