Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0213 and B158DRAFT_0214 overlap by 4 nucleotides B158DRAFT_0214 and B158DRAFT_0215 are separated by 8 nucleotides B158DRAFT_0215 and B158DRAFT_0216 are separated by 111 nucleotides
B158DRAFT_0213: B158DRAFT_0213 - hypothetical protein, at 218,969 to 220,672
_0213
B158DRAFT_0214: B158DRAFT_0214 - hypothetical protein, at 220,669 to 220,944
_0214
B158DRAFT_0215: B158DRAFT_0215 - hypothetical protein, at 220,953 to 221,252
_0215
B158DRAFT_0216: B158DRAFT_0216 - hypothetical protein, at 221,364 to 222,065
_0216
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 219.721 kb on - strand, within B158DRAFT_0213 at 219.802 kb on + strand, within B158DRAFT_0213 at 219.853 kb on - strand, within B158DRAFT_0213 at 219.880 kb on - strand, within B158DRAFT_0213 at 220.056 kb on - strand, within B158DRAFT_0213 at 220.268 kb on - strand, within B158DRAFT_0213 at 220.379 kb on + strand, within B158DRAFT_0213 at 220.410 kb on + strand, within B158DRAFT_0213 at 220.418 kb on - strand, within B158DRAFT_0213 at 220.425 kb on - strand, within B158DRAFT_0213 at 220.541 kb on + strand at 220.548 kb on + strand at 220.549 kb on - strand at 220.579 kb on - strand at 220.814 kb on - strand, within B158DRAFT_0214 at 220.851 kb on - strand, within B158DRAFT_0214 at 220.851 kb on - strand, within B158DRAFT_0214 at 220.853 kb on + strand, within B158DRAFT_0214 at 220.991 kb on - strand, within B158DRAFT_0215 at 221.049 kb on - strand, within B158DRAFT_0215 at 221.049 kb on - strand, within B158DRAFT_0215 at 221.134 kb on + strand, within B158DRAFT_0215 at 221.180 kb on + strand, within B158DRAFT_0215 at 221.285 kb on - strand at 221.315 kb on + strand at 221.414 kb on - strand at 221.467 kb on - strand, within B158DRAFT_0216 at 221.561 kb on - strand, within B158DRAFT_0216 at 221.608 kb on + strand, within B158DRAFT_0216 at 221.718 kb on - strand, within B158DRAFT_0216 at 221.789 kb on - strand, within B158DRAFT_0216 at 221.822 kb on + strand, within B158DRAFT_0216 at 221.830 kb on - strand, within B158DRAFT_0216 at 221.830 kb on - strand, within B158DRAFT_0216 at 221.832 kb on - strand, within B158DRAFT_0216
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 219,721 - B158DRAFT_0213 0.44 -2.0 219,802 + B158DRAFT_0213 0.49 -0.9 219,853 - B158DRAFT_0213 0.52 +1.5 219,880 - B158DRAFT_0213 0.53 -0.4 220,056 - B158DRAFT_0213 0.64 -0.0 220,268 - B158DRAFT_0213 0.76 -2.2 220,379 + B158DRAFT_0213 0.83 +0.2 220,410 + B158DRAFT_0213 0.85 +4.8 220,418 - B158DRAFT_0213 0.85 +0.1 220,425 - B158DRAFT_0213 0.85 -1.0 220,541 + -0.3 220,548 + -0.4 220,549 - +2.0 220,579 - -1.8 220,814 - B158DRAFT_0214 0.53 -0.5 220,851 - B158DRAFT_0214 0.66 -1.3 220,851 - B158DRAFT_0214 0.66 -1.8 220,853 + B158DRAFT_0214 0.67 +0.0 220,991 - B158DRAFT_0215 0.13 +0.3 221,049 - B158DRAFT_0215 0.32 +2.1 221,049 - B158DRAFT_0215 0.32 -0.2 221,134 + B158DRAFT_0215 0.60 +0.4 221,180 + B158DRAFT_0215 0.76 -1.1 221,285 - +0.4 221,315 + -0.5 221,414 - -1.0 221,467 - B158DRAFT_0216 0.15 -1.8 221,561 - B158DRAFT_0216 0.28 +0.4 221,608 + B158DRAFT_0216 0.35 -2.9 221,718 - B158DRAFT_0216 0.50 +2.0 221,789 - B158DRAFT_0216 0.61 -1.1 221,822 + B158DRAFT_0216 0.65 +0.2 221,830 - B158DRAFT_0216 0.66 +0.5 221,830 - B158DRAFT_0216 0.66 -0.1 221,832 - B158DRAFT_0216 0.67 +3.1
Or see this region's nucleotide sequence