Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0183 and B158DRAFT_0184 are separated by 20 nucleotides B158DRAFT_0184 and B158DRAFT_0185 are separated by 14 nucleotides B158DRAFT_0185 and B158DRAFT_0186 are separated by 42 nucleotides B158DRAFT_0186 and B158DRAFT_0187 are separated by 6 nucleotides B158DRAFT_0187 and B158DRAFT_0188 are separated by 36 nucleotides
B158DRAFT_0183: B158DRAFT_0183 - Chemotaxis protein histidine kinase and related kinases, at 183,029 to 189,703
_0183
B158DRAFT_0184: B158DRAFT_0184 - Methylase of chemotaxis methyl-accepting proteins, at 189,724 to 190,599
_0184
B158DRAFT_0185: B158DRAFT_0185 - Methyl-accepting chemotaxis protein, at 190,614 to 192,956
_0185
B158DRAFT_0186: B158DRAFT_0186 - Chemotaxis signal transduction protein, at 192,999 to 193,547
_0186
B158DRAFT_0187: B158DRAFT_0187 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 193,554 to 193,919
_0187
B158DRAFT_0188: B158DRAFT_0188 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 193,956 to 194,354
_0188
Position (kb) 190
191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 189.724 kb on + strand at 189.773 kb on + strand at 190.164 kb on - strand, within B158DRAFT_0184 at 190.205 kb on + strand, within B158DRAFT_0184 at 190.205 kb on + strand, within B158DRAFT_0184 at 190.205 kb on + strand, within B158DRAFT_0184 at 190.205 kb on + strand, within B158DRAFT_0184 at 190.213 kb on - strand, within B158DRAFT_0184 at 190.213 kb on - strand, within B158DRAFT_0184 at 190.213 kb on - strand, within B158DRAFT_0184 at 190.213 kb on - strand, within B158DRAFT_0184 at 190.251 kb on - strand, within B158DRAFT_0184 at 190.452 kb on + strand, within B158DRAFT_0184 at 190.452 kb on - strand, within B158DRAFT_0184 at 190.820 kb on - strand at 190.874 kb on + strand, within B158DRAFT_0185 at 190.935 kb on + strand, within B158DRAFT_0185 at 191.002 kb on - strand, within B158DRAFT_0185 at 191.056 kb on + strand, within B158DRAFT_0185 at 191.341 kb on + strand, within B158DRAFT_0185 at 191.341 kb on + strand, within B158DRAFT_0185 at 191.577 kb on - strand, within B158DRAFT_0185 at 191.762 kb on + strand, within B158DRAFT_0185 at 191.762 kb on + strand, within B158DRAFT_0185 at 191.813 kb on - strand, within B158DRAFT_0185 at 191.935 kb on - strand, within B158DRAFT_0185 at 191.980 kb on - strand, within B158DRAFT_0185 at 191.980 kb on - strand, within B158DRAFT_0185 at 192.041 kb on - strand, within B158DRAFT_0185 at 192.093 kb on + strand, within B158DRAFT_0185 at 192.101 kb on - strand, within B158DRAFT_0185 at 192.135 kb on + strand, within B158DRAFT_0185 at 192.150 kb on - strand, within B158DRAFT_0185 at 192.196 kb on - strand, within B158DRAFT_0185 at 192.219 kb on + strand, within B158DRAFT_0185 at 192.219 kb on + strand, within B158DRAFT_0185 at 192.219 kb on + strand, within B158DRAFT_0185 at 192.227 kb on - strand, within B158DRAFT_0185 at 192.227 kb on - strand, within B158DRAFT_0185 at 192.269 kb on + strand, within B158DRAFT_0185 at 192.277 kb on + strand, within B158DRAFT_0185 at 192.304 kb on - strand, within B158DRAFT_0185 at 192.393 kb on - strand, within B158DRAFT_0185 at 192.548 kb on - strand, within B158DRAFT_0185 at 192.572 kb on - strand, within B158DRAFT_0185 at 192.608 kb on - strand, within B158DRAFT_0185 at 192.960 kb on - strand at 193.083 kb on + strand, within B158DRAFT_0186 at 193.085 kb on + strand, within B158DRAFT_0186 at 193.129 kb on + strand, within B158DRAFT_0186 at 193.129 kb on + strand, within B158DRAFT_0186 at 193.136 kb on - strand, within B158DRAFT_0186 at 193.137 kb on - strand, within B158DRAFT_0186 at 193.195 kb on - strand, within B158DRAFT_0186 at 193.195 kb on - strand, within B158DRAFT_0186 at 193.198 kb on + strand, within B158DRAFT_0186 at 193.206 kb on - strand, within B158DRAFT_0186 at 193.269 kb on - strand, within B158DRAFT_0186 at 193.316 kb on + strand, within B158DRAFT_0186 at 193.324 kb on - strand, within B158DRAFT_0186 at 193.431 kb on + strand, within B158DRAFT_0186 at 193.537 kb on + strand at 193.545 kb on + strand at 193.593 kb on + strand, within B158DRAFT_0187 at 193.786 kb on - strand, within B158DRAFT_0187 at 193.803 kb on + strand, within B158DRAFT_0187
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 189,724 + +1.7 189,773 + +1.8 190,164 - B158DRAFT_0184 0.50 -2.0 190,205 + B158DRAFT_0184 0.55 +0.4 190,205 + B158DRAFT_0184 0.55 +0.9 190,205 + B158DRAFT_0184 0.55 +0.3 190,205 + B158DRAFT_0184 0.55 +1.2 190,213 - B158DRAFT_0184 0.56 -2.3 190,213 - B158DRAFT_0184 0.56 +1.0 190,213 - B158DRAFT_0184 0.56 -1.0 190,213 - B158DRAFT_0184 0.56 -1.5 190,251 - B158DRAFT_0184 0.60 +1.4 190,452 + B158DRAFT_0184 0.83 +0.4 190,452 - B158DRAFT_0184 0.83 +3.0 190,820 - -0.0 190,874 + B158DRAFT_0185 0.11 +0.3 190,935 + B158DRAFT_0185 0.14 +0.8 191,002 - B158DRAFT_0185 0.17 +0.3 191,056 + B158DRAFT_0185 0.19 -0.8 191,341 + B158DRAFT_0185 0.31 +0.2 191,341 + B158DRAFT_0185 0.31 +0.1 191,577 - B158DRAFT_0185 0.41 -0.6 191,762 + B158DRAFT_0185 0.49 +0.0 191,762 + B158DRAFT_0185 0.49 -0.5 191,813 - B158DRAFT_0185 0.51 -0.1 191,935 - B158DRAFT_0185 0.56 +1.2 191,980 - B158DRAFT_0185 0.58 -0.5 191,980 - B158DRAFT_0185 0.58 -0.3 192,041 - B158DRAFT_0185 0.61 -0.0 192,093 + B158DRAFT_0185 0.63 +1.3 192,101 - B158DRAFT_0185 0.63 -0.6 192,135 + B158DRAFT_0185 0.65 +1.9 192,150 - B158DRAFT_0185 0.66 -1.2 192,196 - B158DRAFT_0185 0.68 -0.5 192,219 + B158DRAFT_0185 0.69 +1.8 192,219 + B158DRAFT_0185 0.69 -2.0 192,219 + B158DRAFT_0185 0.69 +1.1 192,227 - B158DRAFT_0185 0.69 -0.0 192,227 - B158DRAFT_0185 0.69 +1.3 192,269 + B158DRAFT_0185 0.71 +1.0 192,277 + B158DRAFT_0185 0.71 -1.0 192,304 - B158DRAFT_0185 0.72 +0.4 192,393 - B158DRAFT_0185 0.76 -0.6 192,548 - B158DRAFT_0185 0.83 -0.4 192,572 - B158DRAFT_0185 0.84 -2.1 192,608 - B158DRAFT_0185 0.85 -0.7 192,960 - -1.2 193,083 + B158DRAFT_0186 0.15 +1.5 193,085 + B158DRAFT_0186 0.16 -0.9 193,129 + B158DRAFT_0186 0.24 +0.6 193,129 + B158DRAFT_0186 0.24 +0.8 193,136 - B158DRAFT_0186 0.25 +1.1 193,137 - B158DRAFT_0186 0.25 +0.2 193,195 - B158DRAFT_0186 0.36 -0.6 193,195 - B158DRAFT_0186 0.36 +0.5 193,198 + B158DRAFT_0186 0.36 +0.4 193,206 - B158DRAFT_0186 0.38 -0.4 193,269 - B158DRAFT_0186 0.49 -0.6 193,316 + B158DRAFT_0186 0.58 +0.6 193,324 - B158DRAFT_0186 0.59 +0.5 193,431 + B158DRAFT_0186 0.79 +0.4 193,537 + +0.4 193,545 + +2.4 193,593 + B158DRAFT_0187 0.11 +0.0 193,786 - B158DRAFT_0187 0.63 +0.9 193,803 + B158DRAFT_0187 0.68 +0.2
Or see this region's nucleotide sequence