Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0077 and B158DRAFT_0078 overlap by 4 nucleotides B158DRAFT_0078 and B158DRAFT_0079 are separated by 35 nucleotides B158DRAFT_0079 and B158DRAFT_0080 are separated by 27 nucleotides B158DRAFT_0080 and B158DRAFT_0081 are separated by 43 nucleotides
B158DRAFT_0077: B158DRAFT_0077 - Uncharacterized conserved protein, at 72,604 to 72,873
_0077
B158DRAFT_0078: B158DRAFT_0078 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 72,870 to 73,769
_0078
B158DRAFT_0079: B158DRAFT_0079 - D-alanyl-D-alanine carboxypeptidase, at 73,805 to 74,974
_0079
B158DRAFT_0080: B158DRAFT_0080 - rare lipoprotein A, at 75,002 to 75,904
_0080
B158DRAFT_0081: B158DRAFT_0081 - lytic murein transglycosylase B, at 75,948 to 76,982
_0081
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 72.921 kb on - strand at 72.933 kb on - strand at 73.065 kb on - strand, within B158DRAFT_0078 at 73.085 kb on + strand, within B158DRAFT_0078 at 73.107 kb on + strand, within B158DRAFT_0078 at 73.107 kb on + strand, within B158DRAFT_0078 at 73.107 kb on + strand, within B158DRAFT_0078 at 73.107 kb on + strand, within B158DRAFT_0078 at 73.206 kb on + strand, within B158DRAFT_0078 at 73.223 kb on + strand, within B158DRAFT_0078 at 73.234 kb on + strand, within B158DRAFT_0078 at 73.248 kb on - strand, within B158DRAFT_0078 at 73.269 kb on + strand, within B158DRAFT_0078 at 73.305 kb on - strand, within B158DRAFT_0078 at 73.319 kb on - strand, within B158DRAFT_0078 at 73.389 kb on + strand, within B158DRAFT_0078 at 73.399 kb on + strand, within B158DRAFT_0078 at 73.471 kb on + strand, within B158DRAFT_0078 at 73.486 kb on - strand, within B158DRAFT_0078 at 73.535 kb on - strand, within B158DRAFT_0078 at 73.535 kb on - strand, within B158DRAFT_0078 at 73.535 kb on - strand, within B158DRAFT_0078 at 73.566 kb on - strand, within B158DRAFT_0078 at 73.580 kb on - strand, within B158DRAFT_0078 at 73.580 kb on - strand, within B158DRAFT_0078 at 73.639 kb on - strand, within B158DRAFT_0078 at 73.644 kb on - strand, within B158DRAFT_0078 at 73.671 kb on - strand, within B158DRAFT_0078 at 73.735 kb on + strand at 73.759 kb on + strand at 73.759 kb on + strand at 73.767 kb on - strand at 73.767 kb on - strand at 73.767 kb on - strand at 73.767 kb on - strand at 73.863 kb on + strand at 73.871 kb on - strand at 73.871 kb on - strand at 74.101 kb on - strand, within B158DRAFT_0079 at 75.305 kb on - strand, within B158DRAFT_0080 at 75.398 kb on - strand, within B158DRAFT_0080 at 75.462 kb on + strand, within B158DRAFT_0080
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 72,921 - -1.9 72,933 - -1.4 73,065 - B158DRAFT_0078 0.22 -2.0 73,085 + B158DRAFT_0078 0.24 -1.4 73,107 + B158DRAFT_0078 0.26 -2.4 73,107 + B158DRAFT_0078 0.26 -1.8 73,107 + B158DRAFT_0078 0.26 -0.8 73,107 + B158DRAFT_0078 0.26 -0.7 73,206 + B158DRAFT_0078 0.37 -1.2 73,223 + B158DRAFT_0078 0.39 +0.6 73,234 + B158DRAFT_0078 0.40 +1.2 73,248 - B158DRAFT_0078 0.42 -0.3 73,269 + B158DRAFT_0078 0.44 -0.6 73,305 - B158DRAFT_0078 0.48 -2.7 73,319 - B158DRAFT_0078 0.50 +0.8 73,389 + B158DRAFT_0078 0.58 -1.3 73,399 + B158DRAFT_0078 0.59 +0.6 73,471 + B158DRAFT_0078 0.67 -0.9 73,486 - B158DRAFT_0078 0.68 +1.3 73,535 - B158DRAFT_0078 0.74 +0.3 73,535 - B158DRAFT_0078 0.74 -0.3 73,535 - B158DRAFT_0078 0.74 +0.1 73,566 - B158DRAFT_0078 0.77 +1.2 73,580 - B158DRAFT_0078 0.79 -0.8 73,580 - B158DRAFT_0078 0.79 -1.1 73,639 - B158DRAFT_0078 0.85 -0.1 73,644 - B158DRAFT_0078 0.86 +0.2 73,671 - B158DRAFT_0078 0.89 -0.2 73,735 + +0.1 73,759 + -1.3 73,759 + +0.0 73,767 - +1.1 73,767 - -1.2 73,767 - +1.1 73,767 - +1.3 73,863 + +2.1 73,871 - +4.0 73,871 - +2.5 74,101 - B158DRAFT_0079 0.25 +1.1 75,305 - B158DRAFT_0080 0.34 +3.3 75,398 - B158DRAFT_0080 0.44 +2.2 75,462 + B158DRAFT_0080 0.51 -0.3
Or see this region's nucleotide sequence