Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2078

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2076 and B158DRAFT_2077 are separated by 75 nucleotidesB158DRAFT_2077 and B158DRAFT_2078 overlap by 4 nucleotidesB158DRAFT_2078 and B158DRAFT_2079 are separated by 4 nucleotidesB158DRAFT_2079 and B158DRAFT_2080 are separated by 26 nucleotides B158DRAFT_2076: B158DRAFT_2076 - Mg2+ transporter (mgtE), at 215,960 to 217,339 _2076 B158DRAFT_2077: B158DRAFT_2077 - Predicted P-loop-containing kinase, at 217,415 to 218,266 _2077 B158DRAFT_2078: B158DRAFT_2078 - PTS IIA-like nitrogen-regulatory protein PtsN, at 218,263 to 218,811 _2078 B158DRAFT_2079: B158DRAFT_2079 - ribosomal subunit interface protein, at 218,816 to 219,103 _2079 B158DRAFT_2080: B158DRAFT_2080 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 219,130 to 220,602 _2080 Position (kb) 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.481 kb on + strandat 217.484 kb on - strandat 217.484 kb on - strandat 217.502 kb on - strand, within B158DRAFT_2077at 217.504 kb on - strand, within B158DRAFT_2077at 217.523 kb on + strand, within B158DRAFT_2077at 217.539 kb on - strand, within B158DRAFT_2077at 217.548 kb on - strand, within B158DRAFT_2077at 217.596 kb on + strand, within B158DRAFT_2077at 217.604 kb on - strand, within B158DRAFT_2077at 217.606 kb on + strand, within B158DRAFT_2077at 217.610 kb on + strand, within B158DRAFT_2077at 217.610 kb on + strand, within B158DRAFT_2077at 217.618 kb on - strand, within B158DRAFT_2077at 217.624 kb on + strand, within B158DRAFT_2077at 217.632 kb on - strand, within B158DRAFT_2077at 217.663 kb on - strand, within B158DRAFT_2077at 217.701 kb on + strand, within B158DRAFT_2077at 217.701 kb on + strand, within B158DRAFT_2077at 217.701 kb on + strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.709 kb on - strand, within B158DRAFT_2077at 217.756 kb on + strand, within B158DRAFT_2077at 217.806 kb on + strand, within B158DRAFT_2077at 217.806 kb on + strand, within B158DRAFT_2077at 217.806 kb on + strand, within B158DRAFT_2077at 217.806 kb on + strand, within B158DRAFT_2077at 217.806 kb on + strand, within B158DRAFT_2077at 217.814 kb on - strand, within B158DRAFT_2077at 217.814 kb on - strand, within B158DRAFT_2077at 217.852 kb on + strand, within B158DRAFT_2077at 217.852 kb on + strand, within B158DRAFT_2077at 217.852 kb on + strand, within B158DRAFT_2077at 217.852 kb on + strand, within B158DRAFT_2077at 217.860 kb on - strand, within B158DRAFT_2077at 217.860 kb on - strand, within B158DRAFT_2077at 217.868 kb on + strand, within B158DRAFT_2077at 217.868 kb on - strand, within B158DRAFT_2077at 217.878 kb on + strand, within B158DRAFT_2077at 218.022 kb on + strand, within B158DRAFT_2077at 218.022 kb on + strand, within B158DRAFT_2077at 218.022 kb on + strand, within B158DRAFT_2077at 218.030 kb on - strand, within B158DRAFT_2077at 218.030 kb on - strand, within B158DRAFT_2077at 218.030 kb on - strand, within B158DRAFT_2077at 218.098 kb on + strand, within B158DRAFT_2077at 218.113 kb on - strand, within B158DRAFT_2077at 218.131 kb on + strand, within B158DRAFT_2077at 218.131 kb on + strand, within B158DRAFT_2077at 218.139 kb on - strand, within B158DRAFT_2077at 218.228 kb on + strandat 218.236 kb on - strandat 218.330 kb on - strand, within B158DRAFT_2078at 218.340 kb on - strand, within B158DRAFT_2078at 218.346 kb on - strand, within B158DRAFT_2078at 218.347 kb on - strand, within B158DRAFT_2078at 218.388 kb on + strand, within B158DRAFT_2078at 218.406 kb on - strand, within B158DRAFT_2078at 218.473 kb on - strand, within B158DRAFT_2078at 218.475 kb on + strand, within B158DRAFT_2078at 218.518 kb on + strand, within B158DRAFT_2078at 218.518 kb on + strand, within B158DRAFT_2078at 218.532 kb on + strand, within B158DRAFT_2078at 218.532 kb on + strand, within B158DRAFT_2078at 218.532 kb on + strand, within B158DRAFT_2078at 218.573 kb on - strand, within B158DRAFT_2078at 218.584 kb on + strand, within B158DRAFT_2078at 218.586 kb on + strand, within B158DRAFT_2078at 218.589 kb on + strand, within B158DRAFT_2078at 218.589 kb on + strand, within B158DRAFT_2078at 218.604 kb on - strand, within B158DRAFT_2078at 218.604 kb on - strand, within B158DRAFT_2078at 218.619 kb on - strand, within B158DRAFT_2078at 218.653 kb on - strand, within B158DRAFT_2078at 218.789 kb on - strandat 218.814 kb on + strandat 218.814 kb on + strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.822 kb on - strandat 218.891 kb on + strand, within B158DRAFT_2079at 218.938 kb on + strand, within B158DRAFT_2079at 219.103 kb on - strandat 219.154 kb on - strandat 219.264 kb on - strandat 219.264 kb on - strandat 219.292 kb on - strand, within B158DRAFT_2080at 219.587 kb on - strand, within B158DRAFT_2080at 219.587 kb on - strand, within B158DRAFT_2080at 219.587 kb on - strand, within B158DRAFT_2080at 219.605 kb on - strand, within B158DRAFT_2080at 219.640 kb on - strand, within B158DRAFT_2080at 219.689 kb on + strand, within B158DRAFT_2080at 219.697 kb on - strand, within B158DRAFT_2080at 219.697 kb on - strand, within B158DRAFT_2080at 219.739 kb on - strand, within B158DRAFT_2080at 219.795 kb on - strand, within B158DRAFT_2080at 219.797 kb on + strand, within B158DRAFT_2080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
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217,481 + -1.3
217,484 - +0.8
217,484 - -0.9
217,502 - B158DRAFT_2077 0.10 -2.9
217,504 - B158DRAFT_2077 0.10 +0.9
217,523 + B158DRAFT_2077 0.13 +0.4
217,539 - B158DRAFT_2077 0.15 +1.5
217,548 - B158DRAFT_2077 0.16 -0.0
217,596 + B158DRAFT_2077 0.21 +1.7
217,604 - B158DRAFT_2077 0.22 +0.4
217,606 + B158DRAFT_2077 0.22 -1.0
217,610 + B158DRAFT_2077 0.23 +1.1
217,610 + B158DRAFT_2077 0.23 -1.6
217,618 - B158DRAFT_2077 0.24 +0.5
217,624 + B158DRAFT_2077 0.25 +0.6
217,632 - B158DRAFT_2077 0.25 -1.7
217,663 - B158DRAFT_2077 0.29 +0.2
217,701 + B158DRAFT_2077 0.34 -0.6
217,701 + B158DRAFT_2077 0.34 +0.3
217,701 + B158DRAFT_2077 0.34 +0.2
217,709 - B158DRAFT_2077 0.35 +0.9
217,709 - B158DRAFT_2077 0.35 -0.8
217,709 - B158DRAFT_2077 0.35 -1.1
217,709 - B158DRAFT_2077 0.35 -0.2
217,709 - B158DRAFT_2077 0.35 -0.6
217,709 - B158DRAFT_2077 0.35 -1.4
217,709 - B158DRAFT_2077 0.35 -1.9
217,709 - B158DRAFT_2077 0.35 -0.7
217,709 - B158DRAFT_2077 0.35 -2.9
217,756 + B158DRAFT_2077 0.40 +0.4
217,806 + B158DRAFT_2077 0.46 +0.9
217,806 + B158DRAFT_2077 0.46 +0.8
217,806 + B158DRAFT_2077 0.46 +2.5
217,806 + B158DRAFT_2077 0.46 +0.1
217,806 + B158DRAFT_2077 0.46 +0.2
217,814 - B158DRAFT_2077 0.47 -1.4
217,814 - B158DRAFT_2077 0.47 +1.8
217,852 + B158DRAFT_2077 0.51 +2.1
217,852 + B158DRAFT_2077 0.51 -0.2
217,852 + B158DRAFT_2077 0.51 +0.6
217,852 + B158DRAFT_2077 0.51 -1.3
217,860 - B158DRAFT_2077 0.52 -0.8
217,860 - B158DRAFT_2077 0.52 +0.1
217,868 + B158DRAFT_2077 0.53 -0.0
217,868 - B158DRAFT_2077 0.53 +2.1
217,878 + B158DRAFT_2077 0.54 +0.3
218,022 + B158DRAFT_2077 0.71 -0.2
218,022 + B158DRAFT_2077 0.71 -0.7
218,022 + B158DRAFT_2077 0.71 +2.5
218,030 - B158DRAFT_2077 0.72 +0.5
218,030 - B158DRAFT_2077 0.72 -1.6
218,030 - B158DRAFT_2077 0.72 -1.1
218,098 + B158DRAFT_2077 0.80 -1.5
218,113 - B158DRAFT_2077 0.82 -1.6
218,131 + B158DRAFT_2077 0.84 -0.5
218,131 + B158DRAFT_2077 0.84 +0.2
218,139 - B158DRAFT_2077 0.85 +1.8
218,228 + +1.1
218,236 - -0.9
218,330 - B158DRAFT_2078 0.12 -2.4
218,340 - B158DRAFT_2078 0.14 +0.6
218,346 - B158DRAFT_2078 0.15 -0.7
218,347 - B158DRAFT_2078 0.15 -2.4
218,388 + B158DRAFT_2078 0.23 +1.8
218,406 - B158DRAFT_2078 0.26 +0.1
218,473 - B158DRAFT_2078 0.38 +0.5
218,475 + B158DRAFT_2078 0.39 +1.0
218,518 + B158DRAFT_2078 0.46 -2.6
218,518 + B158DRAFT_2078 0.46 +1.3
218,532 + B158DRAFT_2078 0.49 -0.4
218,532 + B158DRAFT_2078 0.49 -1.2
218,532 + B158DRAFT_2078 0.49 -1.0
218,573 - B158DRAFT_2078 0.56 +0.5
218,584 + B158DRAFT_2078 0.58 +0.1
218,586 + B158DRAFT_2078 0.59 +1.8
218,589 + B158DRAFT_2078 0.59 -1.3
218,589 + B158DRAFT_2078 0.59 -1.6
218,604 - B158DRAFT_2078 0.62 -1.6
218,604 - B158DRAFT_2078 0.62 -0.2
218,619 - B158DRAFT_2078 0.65 -0.1
218,653 - B158DRAFT_2078 0.71 +0.4
218,789 - +2.2
218,814 + +2.0
218,814 + +1.4
218,822 - +1.1
218,822 - +1.4
218,822 - +0.2
218,822 - +0.1
218,822 - +0.1
218,822 - +1.1
218,891 + B158DRAFT_2079 0.26 -1.3
218,938 + B158DRAFT_2079 0.42 -2.6
219,103 - -0.9
219,154 - +0.3
219,264 - -1.5
219,264 - -0.8
219,292 - B158DRAFT_2080 0.11 -0.9
219,587 - B158DRAFT_2080 0.31 -0.2
219,587 - B158DRAFT_2080 0.31 +1.1
219,587 - B158DRAFT_2080 0.31 -2.0
219,605 - B158DRAFT_2080 0.32 +1.3
219,640 - B158DRAFT_2080 0.35 +0.2
219,689 + B158DRAFT_2080 0.38 -1.1
219,697 - B158DRAFT_2080 0.38 -0.6
219,697 - B158DRAFT_2080 0.38 -3.1
219,739 - B158DRAFT_2080 0.41 -0.3
219,795 - B158DRAFT_2080 0.45 -1.0
219,797 + B158DRAFT_2080 0.45 -0.3

Or see this region's nucleotide sequence