Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1838

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1836 and B158DRAFT_1837 are separated by 247 nucleotidesB158DRAFT_1837 and B158DRAFT_1838 are separated by 45 nucleotidesB158DRAFT_1838 and B158DRAFT_1839 are separated by 1 nucleotides B158DRAFT_1836: B158DRAFT_1836 - isocitrate dehydrogenase, NADP-dependent, monomeric type, at 1,934,303 to 1,936,525 _1836 B158DRAFT_1837: B158DRAFT_1837 - ribosomal large subunit pseudouridine synthase E (EC 5.4.99.-), at 1,936,773 to 1,937,378 _1837 B158DRAFT_1838: B158DRAFT_1838 - ADP-ribose pyrophosphatase, at 1,937,424 to 1,937,933 _1838 B158DRAFT_1839: B158DRAFT_1839 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 1,937,935 to 1,939,038 _1839 Position (kb) 1937 1938Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1936.690 kb on + strandat 1936.767 kb on - strandat 1936.767 kb on - strandat 1936.800 kb on + strandat 1936.802 kb on + strandat 1936.858 kb on + strand, within B158DRAFT_1837at 1936.858 kb on + strand, within B158DRAFT_1837at 1936.866 kb on - strand, within B158DRAFT_1837at 1936.874 kb on + strand, within B158DRAFT_1837at 1936.879 kb on + strand, within B158DRAFT_1837at 1936.911 kb on + strand, within B158DRAFT_1837at 1936.912 kb on + strand, within B158DRAFT_1837at 1936.919 kb on - strand, within B158DRAFT_1837at 1936.920 kb on - strand, within B158DRAFT_1837at 1936.950 kb on - strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.038 kb on + strand, within B158DRAFT_1837at 1937.038 kb on + strand, within B158DRAFT_1837at 1937.041 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.080 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.166 kb on + strand, within B158DRAFT_1837at 1937.194 kb on - strand, within B158DRAFT_1837at 1937.214 kb on + strand, within B158DRAFT_1837at 1937.222 kb on - strand, within B158DRAFT_1837at 1937.222 kb on - strand, within B158DRAFT_1837at 1937.229 kb on + strand, within B158DRAFT_1837at 1937.247 kb on + strand, within B158DRAFT_1837at 1937.323 kb on - strandat 1937.327 kb on + strandat 1937.332 kb on + strandat 1937.396 kb on + strandat 1937.629 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.816 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.848 kb on + strand, within B158DRAFT_1838at 1937.848 kb on + strand, within B158DRAFT_1838at 1937.858 kb on + strand, within B158DRAFT_1838at 1937.866 kb on + strand, within B158DRAFT_1838at 1937.887 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
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1,936,690 + +0.7
1,936,767 - +0.2
1,936,767 - -1.8
1,936,800 + -0.2
1,936,802 + +0.5
1,936,858 + B158DRAFT_1837 0.14 -1.1
1,936,858 + B158DRAFT_1837 0.14 -2.1
1,936,866 - B158DRAFT_1837 0.15 +0.3
1,936,874 + B158DRAFT_1837 0.17 -0.1
1,936,879 + B158DRAFT_1837 0.17 -0.9
1,936,911 + B158DRAFT_1837 0.23 +0.7
1,936,912 + B158DRAFT_1837 0.23 +1.2
1,936,919 - B158DRAFT_1837 0.24 +0.3
1,936,920 - B158DRAFT_1837 0.24 +0.0
1,936,950 - B158DRAFT_1837 0.29 +0.2
1,936,997 + B158DRAFT_1837 0.37 -1.5
1,936,997 + B158DRAFT_1837 0.37 -1.6
1,936,997 + B158DRAFT_1837 0.37 -0.5
1,936,997 + B158DRAFT_1837 0.37 -1.5
1,936,997 + B158DRAFT_1837 0.37 -0.4
1,937,005 - B158DRAFT_1837 0.38 -1.5
1,937,005 - B158DRAFT_1837 0.38 -0.9
1,937,005 - B158DRAFT_1837 0.38 -1.0
1,937,005 - B158DRAFT_1837 0.38 -1.6
1,937,005 - B158DRAFT_1837 0.38 -0.7
1,937,005 - B158DRAFT_1837 0.38 -1.5
1,937,005 - B158DRAFT_1837 0.38 -2.5
1,937,038 + B158DRAFT_1837 0.44 -0.8
1,937,038 + B158DRAFT_1837 0.44 -1.1
1,937,041 - B158DRAFT_1837 0.44 -2.0
1,937,046 - B158DRAFT_1837 0.45 -0.6
1,937,046 - B158DRAFT_1837 0.45 -0.4
1,937,046 - B158DRAFT_1837 0.45 +1.1
1,937,046 - B158DRAFT_1837 0.45 -0.6
1,937,046 - B158DRAFT_1837 0.45 -0.5
1,937,080 + B158DRAFT_1837 0.51 -0.9
1,937,098 + B158DRAFT_1837 0.54 -0.8
1,937,098 + B158DRAFT_1837 0.54 -0.6
1,937,098 + B158DRAFT_1837 0.54 -0.2
1,937,106 - B158DRAFT_1837 0.55 +0.1
1,937,106 - B158DRAFT_1837 0.55 -2.4
1,937,106 - B158DRAFT_1837 0.55 -0.2
1,937,166 + B158DRAFT_1837 0.65 +0.6
1,937,194 - B158DRAFT_1837 0.69 -0.1
1,937,214 + B158DRAFT_1837 0.73 -0.9
1,937,222 - B158DRAFT_1837 0.74 -0.7
1,937,222 - B158DRAFT_1837 0.74 -1.2
1,937,229 + B158DRAFT_1837 0.75 -0.6
1,937,247 + B158DRAFT_1837 0.78 -0.7
1,937,323 - +3.1
1,937,327 + +3.3
1,937,332 + -1.0
1,937,396 + +0.2
1,937,629 + B158DRAFT_1838 0.40 -1.4
1,937,783 + B158DRAFT_1838 0.70 -0.6
1,937,783 + B158DRAFT_1838 0.70 +1.1
1,937,783 + B158DRAFT_1838 0.70 -0.7
1,937,783 + B158DRAFT_1838 0.70 +0.4
1,937,783 + B158DRAFT_1838 0.70 -1.2
1,937,783 + B158DRAFT_1838 0.70 +0.9
1,937,783 + B158DRAFT_1838 0.70 +0.0
1,937,783 + B158DRAFT_1838 0.70 +1.1
1,937,783 + B158DRAFT_1838 0.70 +0.8
1,937,816 + B158DRAFT_1838 0.77 -0.2
1,937,829 + B158DRAFT_1838 0.79 -1.6
1,937,829 + B158DRAFT_1838 0.79 -0.6
1,937,829 + B158DRAFT_1838 0.79 +0.4
1,937,829 + B158DRAFT_1838 0.79 +1.5
1,937,829 + B158DRAFT_1838 0.79 +1.4
1,937,829 + B158DRAFT_1838 0.79 -2.7
1,937,848 + B158DRAFT_1838 0.83 -0.1
1,937,848 + B158DRAFT_1838 0.83 -1.5
1,937,858 + B158DRAFT_1838 0.85 -0.2
1,937,866 + B158DRAFT_1838 0.87 -0.7
1,937,887 + -0.3

Or see this region's nucleotide sequence