Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1820

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1819 and B158DRAFT_1820 are separated by 6 nucleotidesB158DRAFT_1820 and B158DRAFT_1821 are separated by 550 nucleotides B158DRAFT_1819: B158DRAFT_1819 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 1,917,130 to 1,918,467 _1819 B158DRAFT_1820: B158DRAFT_1820 - periplasmic chaperone LolA, at 1,918,474 to 1,919,157 _1820 B158DRAFT_1821: B158DRAFT_1821 - DNA segregation ATPase FtsK/SpoIIIE and related proteins, at 1,919,708 to 1,922,047 _1821 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1917.488 kb on - strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.529 kb on + strand, within B158DRAFT_1819at 1917.537 kb on - strand, within B158DRAFT_1819at 1917.691 kb on - strand, within B158DRAFT_1819at 1917.738 kb on + strand, within B158DRAFT_1819at 1917.902 kb on + strand, within B158DRAFT_1819at 1918.028 kb on - strand, within B158DRAFT_1819at 1918.033 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.079 kb on - strand, within B158DRAFT_1819at 1918.079 kb on - strand, within B158DRAFT_1819at 1918.104 kb on - strand, within B158DRAFT_1819at 1918.151 kb on + strand, within B158DRAFT_1819at 1918.153 kb on - strand, within B158DRAFT_1819at 1918.197 kb on + strand, within B158DRAFT_1819at 1918.197 kb on - strand, within B158DRAFT_1819at 1918.215 kb on - strand, within B158DRAFT_1819at 1918.283 kb on + strand, within B158DRAFT_1819at 1918.369 kb on + strandat 1918.377 kb on - strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.530 kb on + strandat 1918.538 kb on - strandat 1918.538 kb on - strandat 1918.538 kb on - strandat 1919.189 kb on + strandat 1919.189 kb on + strandat 1919.189 kb on + strandat 1919.189 kb on + strandat 1919.197 kb on - strandat 1919.197 kb on - strandat 1919.207 kb on - strandat 1919.237 kb on + strandat 1919.263 kb on + strandat 1919.263 kb on + strandat 1919.271 kb on - strandat 1919.271 kb on - strandat 1919.403 kb on + strandat 1919.419 kb on + strandat 1919.440 kb on + strandat 1919.448 kb on - strandat 1919.474 kb on + strandat 1919.482 kb on - strandat 1919.646 kb on + strandat 1919.719 kb on - strandat 1919.738 kb on - strandat 1919.738 kb on - strandat 1919.748 kb on + strandat 1919.752 kb on - strandat 1919.754 kb on - strandat 1919.795 kb on + strandat 1919.813 kb on + strandat 1919.859 kb on + strandat 1919.867 kb on - strandat 1919.915 kb on + strandat 1919.923 kb on - strandat 1919.923 kb on - strandat 1919.953 kb on - strand, within B158DRAFT_1821at 1919.980 kb on - strand, within B158DRAFT_1821at 1920.077 kb on - strand, within B158DRAFT_1821at 1920.080 kb on + strand, within B158DRAFT_1821at 1920.083 kb on - strand, within B158DRAFT_1821at 1920.096 kb on + strand, within B158DRAFT_1821at 1920.098 kb on + strand, within B158DRAFT_1821at 1920.106 kb on - strand, within B158DRAFT_1821at 1920.106 kb on - strand, within B158DRAFT_1821at 1920.135 kb on - strand, within B158DRAFT_1821at 1920.142 kb on + strand, within B158DRAFT_1821at 1920.153 kb on + strand, within B158DRAFT_1821

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
remove
1,917,488 - B158DRAFT_1819 0.27 -0.4
1,917,528 + B158DRAFT_1819 0.30 -0.9
1,917,528 + B158DRAFT_1819 0.30 -0.3
1,917,529 + B158DRAFT_1819 0.30 +4.9
1,917,537 - B158DRAFT_1819 0.30 +0.2
1,917,691 - B158DRAFT_1819 0.42 +0.1
1,917,738 + B158DRAFT_1819 0.45 +0.6
1,917,902 + B158DRAFT_1819 0.58 -1.0
1,918,028 - B158DRAFT_1819 0.67 +0.8
1,918,033 + B158DRAFT_1819 0.67 +0.8
1,918,071 + B158DRAFT_1819 0.70 -0.5
1,918,071 + B158DRAFT_1819 0.70 -1.0
1,918,071 + B158DRAFT_1819 0.70 +0.3
1,918,071 + B158DRAFT_1819 0.70 -1.0
1,918,079 - B158DRAFT_1819 0.71 -0.1
1,918,079 - B158DRAFT_1819 0.71 -0.9
1,918,104 - B158DRAFT_1819 0.73 -0.3
1,918,151 + B158DRAFT_1819 0.76 +0.8
1,918,153 - B158DRAFT_1819 0.76 +0.1
1,918,197 + B158DRAFT_1819 0.80 +0.8
1,918,197 - B158DRAFT_1819 0.80 +2.1
1,918,215 - B158DRAFT_1819 0.81 -0.3
1,918,283 + B158DRAFT_1819 0.86 -0.6
1,918,369 + -0.1
1,918,377 - +0.3
1,918,530 + -0.4
1,918,530 + -0.1
1,918,530 + -2.1
1,918,530 + -2.3
1,918,530 + +0.2
1,918,530 + -1.0
1,918,530 + -0.7
1,918,530 + -0.5
1,918,538 - +0.7
1,918,538 - -0.9
1,918,538 - +1.1
1,919,189 + +1.1
1,919,189 + -1.7
1,919,189 + +0.2
1,919,189 + +0.6
1,919,197 - +1.0
1,919,197 - +0.8
1,919,207 - -0.5
1,919,237 + -3.1
1,919,263 + -1.5
1,919,263 + -1.3
1,919,271 - -1.3
1,919,271 - +2.0
1,919,403 + -0.1
1,919,419 + +0.0
1,919,440 + -0.4
1,919,448 - +0.6
1,919,474 + -0.4
1,919,482 - +0.1
1,919,646 + -0.5
1,919,719 - +0.3
1,919,738 - +0.0
1,919,738 - +0.2
1,919,748 + +0.5
1,919,752 - +0.1
1,919,754 - +0.3
1,919,795 + +1.9
1,919,813 + +1.5
1,919,859 + -1.6
1,919,867 - +3.2
1,919,915 + +2.7
1,919,923 - -0.6
1,919,923 - +1.3
1,919,953 - B158DRAFT_1821 0.10 +0.5
1,919,980 - B158DRAFT_1821 0.12 -0.1
1,920,077 - B158DRAFT_1821 0.16 +1.3
1,920,080 + B158DRAFT_1821 0.16 +1.3
1,920,083 - B158DRAFT_1821 0.16 -1.1
1,920,096 + B158DRAFT_1821 0.17 +1.3
1,920,098 + B158DRAFT_1821 0.17 -1.1
1,920,106 - B158DRAFT_1821 0.17 -1.6
1,920,106 - B158DRAFT_1821 0.17 +0.4
1,920,135 - B158DRAFT_1821 0.18 +0.3
1,920,142 + B158DRAFT_1821 0.19 -0.1
1,920,153 + B158DRAFT_1821 0.19 +0.5

Or see this region's nucleotide sequence