Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1618

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1616 and B158DRAFT_1617 are separated by 16 nucleotidesB158DRAFT_1617 and B158DRAFT_1618 are separated by 256 nucleotidesB158DRAFT_1618 and B158DRAFT_1619 are separated by 44 nucleotides B158DRAFT_1616: B158DRAFT_1616 - copper-(or silver)-translocating P-type ATPase, at 1,675,449 to 1,677,701 _1616 B158DRAFT_1617: B158DRAFT_1617 - hypothetical protein, at 1,677,718 to 1,678,080 _1617 B158DRAFT_1618: B158DRAFT_1618 - sodium/proton antiporter, NhaD family (TC 2.A.62), at 1,678,337 to 1,679,740 _1618 B158DRAFT_1619: B158DRAFT_1619 - choline/carnitine/betaine transport, at 1,679,785 to 1,681,398 _1619 Position (kb) 1678 1679 1680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1677.339 kb on + strand, within B158DRAFT_1616at 1677.340 kb on - strand, within B158DRAFT_1616at 1677.383 kb on + strand, within B158DRAFT_1616at 1677.446 kb on - strand, within B158DRAFT_1616at 1677.446 kb on - strand, within B158DRAFT_1616at 1677.457 kb on + strand, within B158DRAFT_1616at 1677.457 kb on + strand, within B158DRAFT_1616at 1677.465 kb on - strand, within B158DRAFT_1616at 1677.470 kb on - strand, within B158DRAFT_1616at 1677.477 kb on - strandat 1677.490 kb on + strandat 1677.517 kb on + strandat 1677.519 kb on - strandat 1677.573 kb on + strandat 1677.581 kb on - strandat 1677.581 kb on - strandat 1677.581 kb on - strandat 1677.581 kb on - strandat 1677.602 kb on + strandat 1677.605 kb on - strandat 1677.648 kb on - strandat 1677.651 kb on + strandat 1677.651 kb on + strandat 1677.651 kb on + strandat 1677.656 kb on + strandat 1677.659 kb on - strandat 1677.695 kb on + strandat 1677.703 kb on - strandat 1677.746 kb on + strandat 1677.746 kb on + strandat 1677.754 kb on - strandat 1677.754 kb on - strandat 1677.754 kb on - strandat 1677.754 kb on - strandat 1677.802 kb on - strand, within B158DRAFT_1617at 1677.814 kb on + strand, within B158DRAFT_1617at 1677.814 kb on + strand, within B158DRAFT_1617at 1677.856 kb on - strand, within B158DRAFT_1617at 1677.870 kb on - strand, within B158DRAFT_1617at 1677.870 kb on - strand, within B158DRAFT_1617at 1678.053 kb on + strandat 1678.053 kb on + strandat 1678.114 kb on + strandat 1678.120 kb on + strandat 1678.127 kb on + strandat 1678.128 kb on - strandat 1678.128 kb on - strandat 1678.154 kb on + strandat 1678.201 kb on + strandat 1678.209 kb on - strandat 1678.221 kb on - strandat 1678.277 kb on + strandat 1678.285 kb on - strandat 1678.293 kb on + strandat 1678.322 kb on + strandat 1678.480 kb on - strand, within B158DRAFT_1618at 1678.516 kb on + strand, within B158DRAFT_1618at 1678.547 kb on + strand, within B158DRAFT_1618at 1678.547 kb on + strand, within B158DRAFT_1618at 1678.555 kb on - strand, within B158DRAFT_1618at 1678.555 kb on - strand, within B158DRAFT_1618at 1678.555 kb on - strand, within B158DRAFT_1618at 1678.674 kb on + strand, within B158DRAFT_1618at 1678.713 kb on - strand, within B158DRAFT_1618at 1678.739 kb on + strand, within B158DRAFT_1618at 1678.754 kb on + strand, within B158DRAFT_1618at 1678.767 kb on - strand, within B158DRAFT_1618at 1678.767 kb on - strand, within B158DRAFT_1618at 1678.770 kb on + strand, within B158DRAFT_1618at 1678.808 kb on + strand, within B158DRAFT_1618at 1678.808 kb on + strand, within B158DRAFT_1618at 1678.808 kb on + strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.816 kb on - strand, within B158DRAFT_1618at 1678.818 kb on - strand, within B158DRAFT_1618at 1678.818 kb on - strand, within B158DRAFT_1618at 1678.820 kb on + strand, within B158DRAFT_1618at 1678.877 kb on + strand, within B158DRAFT_1618at 1678.885 kb on - strand, within B158DRAFT_1618at 1678.885 kb on - strand, within B158DRAFT_1618at 1678.895 kb on - strand, within B158DRAFT_1618at 1679.002 kb on + strand, within B158DRAFT_1618at 1679.071 kb on + strand, within B158DRAFT_1618at 1679.079 kb on + strand, within B158DRAFT_1618at 1679.087 kb on - strand, within B158DRAFT_1618at 1679.089 kb on + strand, within B158DRAFT_1618at 1679.089 kb on + strand, within B158DRAFT_1618at 1679.089 kb on + strand, within B158DRAFT_1618at 1679.097 kb on - strand, within B158DRAFT_1618at 1679.097 kb on - strand, within B158DRAFT_1618at 1679.111 kb on - strand, within B158DRAFT_1618at 1679.214 kb on + strand, within B158DRAFT_1618at 1679.283 kb on + strand, within B158DRAFT_1618at 1679.307 kb on - strand, within B158DRAFT_1618at 1679.325 kb on + strand, within B158DRAFT_1618at 1679.325 kb on + strand, within B158DRAFT_1618at 1679.333 kb on - strand, within B158DRAFT_1618at 1679.335 kb on + strand, within B158DRAFT_1618at 1679.343 kb on - strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.367 kb on + strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.375 kb on - strand, within B158DRAFT_1618at 1679.423 kb on + strand, within B158DRAFT_1618at 1679.487 kb on - strand, within B158DRAFT_1618at 1679.511 kb on + strand, within B158DRAFT_1618at 1679.516 kb on + strand, within B158DRAFT_1618at 1679.524 kb on - strand, within B158DRAFT_1618at 1679.576 kb on + strand, within B158DRAFT_1618at 1679.576 kb on + strand, within B158DRAFT_1618at 1679.630 kb on + strandat 1679.695 kb on - strandat 1679.695 kb on - strandat 1679.695 kb on - strandat 1679.827 kb on - strandat 1679.856 kb on - strandat 1679.872 kb on + strandat 1679.880 kb on - strandat 1679.935 kb on + strandat 1679.943 kb on - strandat 1679.977 kb on - strand, within B158DRAFT_1619at 1679.996 kb on + strand, within B158DRAFT_1619at 1680.004 kb on - strand, within B158DRAFT_1619at 1680.015 kb on + strand, within B158DRAFT_1619at 1680.015 kb on + strand, within B158DRAFT_1619at 1680.023 kb on - strand, within B158DRAFT_1619at 1680.099 kb on + strand, within B158DRAFT_1619at 1680.169 kb on - strand, within B158DRAFT_1619at 1680.192 kb on - strand, within B158DRAFT_1619at 1680.195 kb on + strand, within B158DRAFT_1619at 1680.195 kb on + strand, within B158DRAFT_1619at 1680.203 kb on - strand, within B158DRAFT_1619at 1680.231 kb on - strand, within B158DRAFT_1619at 1680.238 kb on + strand, within B158DRAFT_1619at 1680.241 kb on - strand, within B158DRAFT_1619at 1680.253 kb on + strand, within B158DRAFT_1619at 1680.253 kb on + strand, within B158DRAFT_1619at 1680.253 kb on + strand, within B158DRAFT_1619at 1680.261 kb on - strand, within B158DRAFT_1619at 1680.261 kb on - strand, within B158DRAFT_1619at 1680.261 kb on - strand, within B158DRAFT_1619at 1680.282 kb on + strand, within B158DRAFT_1619at 1680.290 kb on - strand, within B158DRAFT_1619at 1680.298 kb on - strand, within B158DRAFT_1619at 1680.329 kb on - strand, within B158DRAFT_1619at 1680.357 kb on + strand, within B158DRAFT_1619at 1680.371 kb on + strand, within B158DRAFT_1619at 1680.379 kb on - strand, within B158DRAFT_1619at 1680.380 kb on + strand, within B158DRAFT_1619at 1680.387 kb on - strand, within B158DRAFT_1619at 1680.387 kb on - strand, within B158DRAFT_1619at 1680.388 kb on - strand, within B158DRAFT_1619at 1680.389 kb on + strand, within B158DRAFT_1619at 1680.512 kb on + strand, within B158DRAFT_1619at 1680.527 kb on + strand, within B158DRAFT_1619at 1680.540 kb on + strand, within B158DRAFT_1619at 1680.548 kb on - strand, within B158DRAFT_1619at 1680.548 kb on - strand, within B158DRAFT_1619at 1680.548 kb on - strand, within B158DRAFT_1619at 1680.552 kb on + strand, within B158DRAFT_1619at 1680.560 kb on - strand, within B158DRAFT_1619at 1680.560 kb on - strand, within B158DRAFT_1619at 1680.588 kb on + strand, within B158DRAFT_1619at 1680.594 kb on + strand, within B158DRAFT_1619at 1680.609 kb on - strand, within B158DRAFT_1619at 1680.668 kb on + strand, within B158DRAFT_1619

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
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1,677,339 + B158DRAFT_1616 0.84 -0.2
1,677,340 - B158DRAFT_1616 0.84 -1.5
1,677,383 + B158DRAFT_1616 0.86 -0.6
1,677,446 - B158DRAFT_1616 0.89 -0.1
1,677,446 - B158DRAFT_1616 0.89 +0.5
1,677,457 + B158DRAFT_1616 0.89 +1.3
1,677,457 + B158DRAFT_1616 0.89 +0.3
1,677,465 - B158DRAFT_1616 0.89 +0.1
1,677,470 - B158DRAFT_1616 0.90 -0.4
1,677,477 - -0.6
1,677,490 + -0.9
1,677,517 + -0.0
1,677,519 - -0.0
1,677,573 + -1.0
1,677,581 - +0.4
1,677,581 - +2.4
1,677,581 - -1.8
1,677,581 - -1.0
1,677,602 + -0.5
1,677,605 - +1.4
1,677,648 - -0.5
1,677,651 + -0.0
1,677,651 + -0.6
1,677,651 + +2.6
1,677,656 + -1.4
1,677,659 - +0.8
1,677,695 + -1.6
1,677,703 - +1.1
1,677,746 + -1.5
1,677,746 + -1.0
1,677,754 - +1.1
1,677,754 - -1.7
1,677,754 - +0.4
1,677,754 - +0.4
1,677,802 - B158DRAFT_1617 0.23 +0.4
1,677,814 + B158DRAFT_1617 0.26 +0.1
1,677,814 + B158DRAFT_1617 0.26 +0.7
1,677,856 - B158DRAFT_1617 0.38 +1.6
1,677,870 - B158DRAFT_1617 0.42 +0.2
1,677,870 - B158DRAFT_1617 0.42 -0.8
1,678,053 + +1.3
1,678,053 + -1.1
1,678,114 + +0.4
1,678,120 + +0.4
1,678,127 + +0.5
1,678,128 - -0.9
1,678,128 - -1.4
1,678,154 + -0.9
1,678,201 + -0.1
1,678,209 - -0.1
1,678,221 - +0.1
1,678,277 + -1.1
1,678,285 - +1.1
1,678,293 + +0.1
1,678,322 + +0.6
1,678,480 - B158DRAFT_1618 0.10 -0.2
1,678,516 + B158DRAFT_1618 0.13 +1.5
1,678,547 + B158DRAFT_1618 0.15 +0.5
1,678,547 + B158DRAFT_1618 0.15 -0.4
1,678,555 - B158DRAFT_1618 0.16 -2.5
1,678,555 - B158DRAFT_1618 0.16 -0.7
1,678,555 - B158DRAFT_1618 0.16 -1.0
1,678,674 + B158DRAFT_1618 0.24 -0.3
1,678,713 - B158DRAFT_1618 0.27 -1.2
1,678,739 + B158DRAFT_1618 0.29 -0.4
1,678,754 + B158DRAFT_1618 0.30 -0.3
1,678,767 - B158DRAFT_1618 0.31 -0.4
1,678,767 - B158DRAFT_1618 0.31 +1.1
1,678,770 + B158DRAFT_1618 0.31 +0.9
1,678,808 + B158DRAFT_1618 0.34 +1.0
1,678,808 + B158DRAFT_1618 0.34 +2.1
1,678,808 + B158DRAFT_1618 0.34 +0.0
1,678,816 - B158DRAFT_1618 0.34 -1.7
1,678,816 - B158DRAFT_1618 0.34 +0.7
1,678,816 - B158DRAFT_1618 0.34 -1.1
1,678,816 - B158DRAFT_1618 0.34 -1.8
1,678,818 - B158DRAFT_1618 0.34 -0.0
1,678,818 - B158DRAFT_1618 0.34 +0.1
1,678,820 + B158DRAFT_1618 0.34 +0.9
1,678,877 + B158DRAFT_1618 0.38 -0.5
1,678,885 - B158DRAFT_1618 0.39 -1.1
1,678,885 - B158DRAFT_1618 0.39 +1.3
1,678,895 - B158DRAFT_1618 0.40 +0.4
1,679,002 + B158DRAFT_1618 0.47 +1.0
1,679,071 + B158DRAFT_1618 0.52 -0.2
1,679,079 + B158DRAFT_1618 0.53 +0.9
1,679,087 - B158DRAFT_1618 0.53 -0.3
1,679,089 + B158DRAFT_1618 0.54 +2.4
1,679,089 + B158DRAFT_1618 0.54 -1.7
1,679,089 + B158DRAFT_1618 0.54 +0.4
1,679,097 - B158DRAFT_1618 0.54 -0.2
1,679,097 - B158DRAFT_1618 0.54 -0.2
1,679,111 - B158DRAFT_1618 0.55 +0.8
1,679,214 + B158DRAFT_1618 0.62 +0.3
1,679,283 + B158DRAFT_1618 0.67 -1.0
1,679,307 - B158DRAFT_1618 0.69 +1.6
1,679,325 + B158DRAFT_1618 0.70 -1.4
1,679,325 + B158DRAFT_1618 0.70 +0.5
1,679,333 - B158DRAFT_1618 0.71 +0.2
1,679,335 + B158DRAFT_1618 0.71 +0.3
1,679,343 - B158DRAFT_1618 0.72 -0.8
1,679,367 + B158DRAFT_1618 0.73 -0.6
1,679,367 + B158DRAFT_1618 0.73 +1.0
1,679,367 + B158DRAFT_1618 0.73 +0.8
1,679,367 + B158DRAFT_1618 0.73 +0.9
1,679,375 - B158DRAFT_1618 0.74 +0.9
1,679,375 - B158DRAFT_1618 0.74 +3.0
1,679,375 - B158DRAFT_1618 0.74 +1.2
1,679,375 - B158DRAFT_1618 0.74 -0.6
1,679,375 - B158DRAFT_1618 0.74 +0.2
1,679,423 + B158DRAFT_1618 0.77 -1.3
1,679,487 - B158DRAFT_1618 0.82 +2.7
1,679,511 + B158DRAFT_1618 0.84 -0.5
1,679,516 + B158DRAFT_1618 0.84 +0.2
1,679,524 - B158DRAFT_1618 0.85 -2.8
1,679,576 + B158DRAFT_1618 0.88 +0.1
1,679,576 + B158DRAFT_1618 0.88 +1.6
1,679,630 + +0.2
1,679,695 - -0.9
1,679,695 - -1.4
1,679,695 - +1.7
1,679,827 - -1.4
1,679,856 - -1.1
1,679,872 + -1.5
1,679,880 - +0.7
1,679,935 + +0.7
1,679,943 - -0.7
1,679,977 - B158DRAFT_1619 0.12 +0.1
1,679,996 + B158DRAFT_1619 0.13 -0.2
1,680,004 - B158DRAFT_1619 0.14 +1.4
1,680,015 + B158DRAFT_1619 0.14 -0.9
1,680,015 + B158DRAFT_1619 0.14 +1.1
1,680,023 - B158DRAFT_1619 0.15 -0.3
1,680,099 + B158DRAFT_1619 0.19 -0.1
1,680,169 - B158DRAFT_1619 0.24 -1.7
1,680,192 - B158DRAFT_1619 0.25 -0.3
1,680,195 + B158DRAFT_1619 0.25 -0.6
1,680,195 + B158DRAFT_1619 0.25 -0.9
1,680,203 - B158DRAFT_1619 0.26 +0.1
1,680,231 - B158DRAFT_1619 0.28 +0.3
1,680,238 + B158DRAFT_1619 0.28 -0.5
1,680,241 - B158DRAFT_1619 0.28 -1.5
1,680,253 + B158DRAFT_1619 0.29 -0.6
1,680,253 + B158DRAFT_1619 0.29 -1.6
1,680,253 + B158DRAFT_1619 0.29 +1.5
1,680,261 - B158DRAFT_1619 0.29 +0.6
1,680,261 - B158DRAFT_1619 0.29 -0.2
1,680,261 - B158DRAFT_1619 0.29 +0.8
1,680,282 + B158DRAFT_1619 0.31 +0.4
1,680,290 - B158DRAFT_1619 0.31 -3.3
1,680,298 - B158DRAFT_1619 0.32 +0.5
1,680,329 - B158DRAFT_1619 0.34 +1.2
1,680,357 + B158DRAFT_1619 0.35 +1.0
1,680,371 + B158DRAFT_1619 0.36 -1.6
1,680,379 - B158DRAFT_1619 0.37 -0.3
1,680,380 + B158DRAFT_1619 0.37 +0.1
1,680,387 - B158DRAFT_1619 0.37 -2.3
1,680,387 - B158DRAFT_1619 0.37 -0.6
1,680,388 - B158DRAFT_1619 0.37 -1.6
1,680,389 + B158DRAFT_1619 0.37 +0.3
1,680,512 + B158DRAFT_1619 0.45 +0.2
1,680,527 + B158DRAFT_1619 0.46 +1.3
1,680,540 + B158DRAFT_1619 0.47 -0.2
1,680,548 - B158DRAFT_1619 0.47 +1.7
1,680,548 - B158DRAFT_1619 0.47 +0.1
1,680,548 - B158DRAFT_1619 0.47 -1.1
1,680,552 + B158DRAFT_1619 0.48 +0.2
1,680,560 - B158DRAFT_1619 0.48 +0.4
1,680,560 - B158DRAFT_1619 0.48 -0.9
1,680,588 + B158DRAFT_1619 0.50 +1.1
1,680,594 + B158DRAFT_1619 0.50 -0.0
1,680,609 - B158DRAFT_1619 0.51 -0.7
1,680,668 + B158DRAFT_1619 0.55 -1.3

Or see this region's nucleotide sequence