Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0836

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0834 and B158DRAFT_0835 are separated by 15 nucleotidesB158DRAFT_0835 and B158DRAFT_0836 are separated by 108 nucleotidesB158DRAFT_0836 and B158DRAFT_0837 overlap by 1 nucleotidesB158DRAFT_0837 and B158DRAFT_0838 overlap by 11 nucleotides B158DRAFT_0834: B158DRAFT_0834 - tRNA nucleotidyltransferase/poly(A) polymerase, at 844,216 to 845,451 _0834 B158DRAFT_0835: B158DRAFT_0835 - hypothetical protein, at 845,467 to 845,937 _0835 B158DRAFT_0836: B158DRAFT_0836 - Type II secretory pathway, component ExeA (predicted ATPase), at 846,046 to 847,779 _0836 B158DRAFT_0837: B158DRAFT_0837 - hypothetical protein, at 847,779 to 848,597 _0837 B158DRAFT_0838: B158DRAFT_0838 - Predicted Zn-dependent peptidases, at 848,587 to 851,451 _0838 Position (kb) 846 847 848Strain fitness (log2 ratio) -2 -1 0 1 2 3at 845.456 kb on + strandat 845.469 kb on + strandat 845.469 kb on + strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.477 kb on - strandat 845.487 kb on - strandat 845.517 kb on - strand, within B158DRAFT_0835at 845.524 kb on + strand, within B158DRAFT_0835at 845.582 kb on + strand, within B158DRAFT_0835at 845.726 kb on - strand, within B158DRAFT_0835at 845.746 kb on + strand, within B158DRAFT_0835at 845.751 kb on + strand, within B158DRAFT_0835at 845.751 kb on + strand, within B158DRAFT_0835at 845.829 kb on - strand, within B158DRAFT_0835at 845.830 kb on - strand, within B158DRAFT_0835at 845.886 kb on - strand, within B158DRAFT_0835at 845.894 kb on - strandat 845.894 kb on - strandat 845.896 kb on - strandat 845.899 kb on - strandat 845.906 kb on - strandat 845.928 kb on - strandat 846.046 kb on - strandat 846.131 kb on + strandat 846.145 kb on + strandat 846.149 kb on - strandat 846.173 kb on - strandat 846.207 kb on + strandat 846.224 kb on + strand, within B158DRAFT_0836at 846.232 kb on - strand, within B158DRAFT_0836at 846.293 kb on + strand, within B158DRAFT_0836at 846.293 kb on + strand, within B158DRAFT_0836at 846.401 kb on + strand, within B158DRAFT_0836at 846.412 kb on + strand, within B158DRAFT_0836at 846.413 kb on + strand, within B158DRAFT_0836at 846.420 kb on - strand, within B158DRAFT_0836at 846.420 kb on - strand, within B158DRAFT_0836at 846.420 kb on - strand, within B158DRAFT_0836at 846.424 kb on + strand, within B158DRAFT_0836at 846.544 kb on + strand, within B158DRAFT_0836at 846.545 kb on + strand, within B158DRAFT_0836at 846.547 kb on + strand, within B158DRAFT_0836at 846.548 kb on - strand, within B158DRAFT_0836at 846.600 kb on - strand, within B158DRAFT_0836at 846.767 kb on + strand, within B158DRAFT_0836at 846.782 kb on - strand, within B158DRAFT_0836at 846.811 kb on - strand, within B158DRAFT_0836at 846.811 kb on - strand, within B158DRAFT_0836at 846.822 kb on + strand, within B158DRAFT_0836at 846.912 kb on - strand, within B158DRAFT_0836at 846.929 kb on + strand, within B158DRAFT_0836at 846.937 kb on - strand, within B158DRAFT_0836at 847.005 kb on - strand, within B158DRAFT_0836at 847.026 kb on + strand, within B158DRAFT_0836at 847.026 kb on + strand, within B158DRAFT_0836at 847.026 kb on + strand, within B158DRAFT_0836at 847.034 kb on - strand, within B158DRAFT_0836at 847.055 kb on + strand, within B158DRAFT_0836at 847.062 kb on + strand, within B158DRAFT_0836at 847.179 kb on - strand, within B158DRAFT_0836at 847.302 kb on + strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.483 kb on + strand, within B158DRAFT_0836at 847.491 kb on - strand, within B158DRAFT_0836at 847.491 kb on - strand, within B158DRAFT_0836at 847.865 kb on - strand, within B158DRAFT_0837at 848.000 kb on - strand, within B158DRAFT_0837at 848.084 kb on + strand, within B158DRAFT_0837at 848.220 kb on - strand, within B158DRAFT_0837at 848.318 kb on - strand, within B158DRAFT_0837at 848.330 kb on - strand, within B158DRAFT_0837at 848.404 kb on + strand, within B158DRAFT_0837at 848.411 kb on - strand, within B158DRAFT_0837at 848.416 kb on - strand, within B158DRAFT_0837at 848.479 kb on + strand, within B158DRAFT_0837at 848.479 kb on + strand, within B158DRAFT_0837at 848.487 kb on - strand, within B158DRAFT_0837at 848.568 kb on + strandat 848.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
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845,456 + +1.3
845,469 + -0.0
845,469 + -1.1
845,477 - -0.2
845,477 - +0.2
845,477 - -0.6
845,477 - -1.1
845,477 - +0.5
845,487 - -1.4
845,517 - B158DRAFT_0835 0.11 -1.5
845,524 + B158DRAFT_0835 0.12 +0.5
845,582 + B158DRAFT_0835 0.24 +0.7
845,726 - B158DRAFT_0835 0.55 -0.6
845,746 + B158DRAFT_0835 0.59 -0.5
845,751 + B158DRAFT_0835 0.60 -1.6
845,751 + B158DRAFT_0835 0.60 +0.6
845,829 - B158DRAFT_0835 0.77 +0.3
845,830 - B158DRAFT_0835 0.77 -1.6
845,886 - B158DRAFT_0835 0.89 +0.4
845,894 - -2.1
845,894 - -2.0
845,896 - +0.1
845,899 - -1.8
845,906 - -0.7
845,928 - +0.1
846,046 - -0.3
846,131 + +0.5
846,145 + -1.0
846,149 - +0.0
846,173 - -0.4
846,207 + -0.9
846,224 + B158DRAFT_0836 0.10 +1.6
846,232 - B158DRAFT_0836 0.11 -0.2
846,293 + B158DRAFT_0836 0.14 +0.1
846,293 + B158DRAFT_0836 0.14 -1.5
846,401 + B158DRAFT_0836 0.20 -0.6
846,412 + B158DRAFT_0836 0.21 -1.7
846,413 + B158DRAFT_0836 0.21 -2.6
846,420 - B158DRAFT_0836 0.22 +0.1
846,420 - B158DRAFT_0836 0.22 -1.4
846,420 - B158DRAFT_0836 0.22 -0.0
846,424 + B158DRAFT_0836 0.22 -0.3
846,544 + B158DRAFT_0836 0.29 -1.0
846,545 + B158DRAFT_0836 0.29 +0.1
846,547 + B158DRAFT_0836 0.29 -0.2
846,548 - B158DRAFT_0836 0.29 -0.1
846,600 - B158DRAFT_0836 0.32 -0.3
846,767 + B158DRAFT_0836 0.42 -1.8
846,782 - B158DRAFT_0836 0.42 +0.4
846,811 - B158DRAFT_0836 0.44 -0.9
846,811 - B158DRAFT_0836 0.44 -0.5
846,822 + B158DRAFT_0836 0.45 +0.4
846,912 - B158DRAFT_0836 0.50 -1.3
846,929 + B158DRAFT_0836 0.51 +0.2
846,937 - B158DRAFT_0836 0.51 +2.2
847,005 - B158DRAFT_0836 0.55 +0.9
847,026 + B158DRAFT_0836 0.57 -0.4
847,026 + B158DRAFT_0836 0.57 -1.4
847,026 + B158DRAFT_0836 0.57 -1.8
847,034 - B158DRAFT_0836 0.57 -0.3
847,055 + B158DRAFT_0836 0.58 -2.2
847,062 + B158DRAFT_0836 0.59 -1.4
847,179 - B158DRAFT_0836 0.65 -0.2
847,302 + B158DRAFT_0836 0.72 +0.5
847,388 - B158DRAFT_0836 0.77 -1.1
847,388 - B158DRAFT_0836 0.77 -0.6
847,388 - B158DRAFT_0836 0.77 -1.5
847,388 - B158DRAFT_0836 0.77 -1.7
847,483 + B158DRAFT_0836 0.83 +0.5
847,491 - B158DRAFT_0836 0.83 -0.7
847,491 - B158DRAFT_0836 0.83 +0.8
847,865 - B158DRAFT_0837 0.11 -0.9
848,000 - B158DRAFT_0837 0.27 -1.6
848,084 + B158DRAFT_0837 0.37 -1.3
848,220 - B158DRAFT_0837 0.54 -0.6
848,318 - B158DRAFT_0837 0.66 +3.1
848,330 - B158DRAFT_0837 0.67 +0.4
848,404 + B158DRAFT_0837 0.76 -0.3
848,411 - B158DRAFT_0837 0.77 -1.1
848,416 - B158DRAFT_0837 0.78 +0.1
848,479 + B158DRAFT_0837 0.85 +0.1
848,479 + B158DRAFT_0837 0.85 -0.3
848,487 - B158DRAFT_0837 0.86 -2.6
848,568 + -1.8
848,574 + -0.1

Or see this region's nucleotide sequence