Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0763

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0762 and B158DRAFT_0763 are separated by 96 nucleotidesB158DRAFT_0763 and B158DRAFT_0764 are separated by 12 nucleotides B158DRAFT_0762: B158DRAFT_0762 - type IV pilus secretin (or competence protein) PilQ, at 768,016 to 770,106 _0762 B158DRAFT_0763: B158DRAFT_0763 - shikimate kinase (EC 2.7.1.71), at 770,203 to 770,727 _0763 B158DRAFT_0764: B158DRAFT_0764 - 3-dehydroquinate synthase (EC 4.2.3.4), at 770,740 to 771,822 _0764 Position (kb) 770 771Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 769.225 kb on + strand, within B158DRAFT_0762at 769.225 kb on + strand, within B158DRAFT_0762at 769.233 kb on + strand, within B158DRAFT_0762at 769.260 kb on + strand, within B158DRAFT_0762at 769.289 kb on - strand, within B158DRAFT_0762at 769.344 kb on + strand, within B158DRAFT_0762at 769.374 kb on + strand, within B158DRAFT_0762at 769.382 kb on - strand, within B158DRAFT_0762at 769.474 kb on + strand, within B158DRAFT_0762at 769.554 kb on - strand, within B158DRAFT_0762at 769.600 kb on + strand, within B158DRAFT_0762at 769.637 kb on + strand, within B158DRAFT_0762at 769.637 kb on + strand, within B158DRAFT_0762at 769.704 kb on + strand, within B158DRAFT_0762at 769.789 kb on + strand, within B158DRAFT_0762at 769.827 kb on + strand, within B158DRAFT_0762at 769.996 kb on + strandat 770.002 kb on - strandat 770.003 kb on - strandat 770.143 kb on - strandat 770.439 kb on - strand, within B158DRAFT_0763at 770.834 kb on + strandat 770.851 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.888 kb on + strand, within B158DRAFT_0764at 770.891 kb on - strand, within B158DRAFT_0764at 770.896 kb on - strand, within B158DRAFT_0764at 770.896 kb on - strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.898 kb on + strand, within B158DRAFT_0764at 770.906 kb on - strand, within B158DRAFT_0764at 770.906 kb on - strand, within B158DRAFT_0764at 770.929 kb on - strand, within B158DRAFT_0764at 770.948 kb on + strand, within B158DRAFT_0764at 770.951 kb on - strand, within B158DRAFT_0764at 770.953 kb on + strand, within B158DRAFT_0764at 770.966 kb on + strand, within B158DRAFT_0764at 770.974 kb on - strand, within B158DRAFT_0764at 770.978 kb on + strand, within B158DRAFT_0764at 771.018 kb on - strand, within B158DRAFT_0764at 771.132 kb on + strand, within B158DRAFT_0764at 771.138 kb on + strand, within B158DRAFT_0764at 771.140 kb on - strand, within B158DRAFT_0764at 771.220 kb on - strand, within B158DRAFT_0764at 771.250 kb on - strand, within B158DRAFT_0764at 771.291 kb on + strand, within B158DRAFT_0764at 771.291 kb on + strand, within B158DRAFT_0764at 771.472 kb on + strand, within B158DRAFT_0764at 771.671 kb on - strand, within B158DRAFT_0764at 771.674 kb on - strand, within B158DRAFT_0764at 771.676 kb on + strand, within B158DRAFT_0764at 771.684 kb on - strand, within B158DRAFT_0764

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
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769,225 + B158DRAFT_0762 0.58 +1.4
769,225 + B158DRAFT_0762 0.58 -0.1
769,233 + B158DRAFT_0762 0.58 -1.9
769,260 + B158DRAFT_0762 0.59 -0.4
769,289 - B158DRAFT_0762 0.61 +0.9
769,344 + B158DRAFT_0762 0.64 -1.1
769,374 + B158DRAFT_0762 0.65 +0.4
769,382 - B158DRAFT_0762 0.65 +0.7
769,474 + B158DRAFT_0762 0.70 +0.6
769,554 - B158DRAFT_0762 0.74 +1.8
769,600 + B158DRAFT_0762 0.76 +0.4
769,637 + B158DRAFT_0762 0.78 -1.3
769,637 + B158DRAFT_0762 0.78 -0.3
769,704 + B158DRAFT_0762 0.81 -1.1
769,789 + B158DRAFT_0762 0.85 +1.0
769,827 + B158DRAFT_0762 0.87 -1.1
769,996 + -1.3
770,002 - +1.4
770,003 - -0.4
770,143 - +2.9
770,439 - B158DRAFT_0763 0.45 +4.0
770,834 + -2.3
770,851 + B158DRAFT_0764 0.10 -0.8
770,888 + B158DRAFT_0764 0.14 +0.8
770,888 + B158DRAFT_0764 0.14 +0.6
770,888 + B158DRAFT_0764 0.14 +2.7
770,888 + B158DRAFT_0764 0.14 +0.6
770,891 - B158DRAFT_0764 0.14 +0.8
770,896 - B158DRAFT_0764 0.14 +0.6
770,896 - B158DRAFT_0764 0.14 +1.4
770,898 + B158DRAFT_0764 0.15 +0.5
770,898 + B158DRAFT_0764 0.15 +0.3
770,898 + B158DRAFT_0764 0.15 -0.6
770,898 + B158DRAFT_0764 0.15 +0.4
770,906 - B158DRAFT_0764 0.15 -1.0
770,906 - B158DRAFT_0764 0.15 +1.7
770,929 - B158DRAFT_0764 0.17 +2.0
770,948 + B158DRAFT_0764 0.19 +0.5
770,951 - B158DRAFT_0764 0.19 -0.4
770,953 + B158DRAFT_0764 0.20 +1.0
770,966 + B158DRAFT_0764 0.21 -0.1
770,974 - B158DRAFT_0764 0.22 -0.7
770,978 + B158DRAFT_0764 0.22 +0.6
771,018 - B158DRAFT_0764 0.26 -1.6
771,132 + B158DRAFT_0764 0.36 -0.4
771,138 + B158DRAFT_0764 0.37 +0.7
771,140 - B158DRAFT_0764 0.37 -0.3
771,220 - B158DRAFT_0764 0.44 -0.7
771,250 - B158DRAFT_0764 0.47 -0.4
771,291 + B158DRAFT_0764 0.51 +4.0
771,291 + B158DRAFT_0764 0.51 -0.3
771,472 + B158DRAFT_0764 0.68 -0.5
771,671 - B158DRAFT_0764 0.86 +1.1
771,674 - B158DRAFT_0764 0.86 +1.5
771,676 + B158DRAFT_0764 0.86 +1.0
771,684 - B158DRAFT_0764 0.87 -0.3

Or see this region's nucleotide sequence