Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0721

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0719 and B158DRAFT_0720 are separated by 10 nucleotidesB158DRAFT_0720 and B158DRAFT_0721 overlap by 4 nucleotidesB158DRAFT_0721 and B158DRAFT_0722 overlap by 4 nucleotides B158DRAFT_0719: B158DRAFT_0719 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 719,925 to 720,947 _0719 B158DRAFT_0720: B158DRAFT_0720 - hypothetical protein, at 720,958 to 721,635 _0720 B158DRAFT_0721: B158DRAFT_0721 - Predicted redox protein, regulator of disulfide bond formation, at 721,632 to 721,865 _0721 B158DRAFT_0722: B158DRAFT_0722 - Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain, at 721,862 to 722,950 _0722 Position (kb) 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 720.691 kb on + strand, within B158DRAFT_0719at 720.691 kb on + strand, within B158DRAFT_0719at 720.915 kb on + strandat 720.917 kb on - strandat 721.094 kb on + strand, within B158DRAFT_0720at 721.210 kb on - strand, within B158DRAFT_0720at 721.280 kb on + strand, within B158DRAFT_0720at 721.524 kb on + strand, within B158DRAFT_0720at 721.547 kb on + strand, within B158DRAFT_0720at 721.567 kb on - strand, within B158DRAFT_0720at 721.711 kb on - strand, within B158DRAFT_0721at 721.738 kb on + strand, within B158DRAFT_0721at 721.738 kb on + strand, within B158DRAFT_0721at 721.745 kb on + strand, within B158DRAFT_0721at 721.745 kb on + strand, within B158DRAFT_0721at 721.746 kb on - strand, within B158DRAFT_0721at 721.746 kb on - strand, within B158DRAFT_0721at 721.832 kb on + strand, within B158DRAFT_0721at 721.840 kb on - strand, within B158DRAFT_0721at 721.842 kb on + strandat 721.918 kb on + strandat 722.045 kb on + strand, within B158DRAFT_0722at 722.053 kb on - strand, within B158DRAFT_0722at 722.058 kb on + strand, within B158DRAFT_0722at 722.075 kb on - strand, within B158DRAFT_0722at 722.196 kb on - strand, within B158DRAFT_0722at 722.290 kb on - strand, within B158DRAFT_0722at 722.296 kb on + strand, within B158DRAFT_0722at 722.356 kb on - strand, within B158DRAFT_0722at 722.356 kb on - strand, within B158DRAFT_0722at 722.385 kb on + strand, within B158DRAFT_0722at 722.388 kb on - strand, within B158DRAFT_0722at 722.436 kb on + strand, within B158DRAFT_0722at 722.460 kb on - strand, within B158DRAFT_0722at 722.542 kb on + strand, within B158DRAFT_0722at 722.562 kb on + strand, within B158DRAFT_0722at 722.568 kb on + strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.576 kb on - strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.616 kb on + strand, within B158DRAFT_0722at 722.617 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.618 kb on + strand, within B158DRAFT_0722at 722.624 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.626 kb on - strand, within B158DRAFT_0722at 722.648 kb on - strand, within B158DRAFT_0722at 722.703 kb on - strand, within B158DRAFT_0722at 722.718 kb on - strand, within B158DRAFT_0722at 722.720 kb on + strand, within B158DRAFT_0722at 722.720 kb on + strand, within B158DRAFT_0722at 722.728 kb on - strand, within B158DRAFT_0722at 722.783 kb on - strand, within B158DRAFT_0722at 722.783 kb on - strand, within B158DRAFT_0722

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
remove
720,691 + B158DRAFT_0719 0.75 -2.1
720,691 + B158DRAFT_0719 0.75 +0.2
720,915 + -0.4
720,917 - -0.1
721,094 + B158DRAFT_0720 0.20 +1.1
721,210 - B158DRAFT_0720 0.37 +0.2
721,280 + B158DRAFT_0720 0.47 +0.9
721,524 + B158DRAFT_0720 0.83 -0.2
721,547 + B158DRAFT_0720 0.87 -1.5
721,567 - B158DRAFT_0720 0.90 -0.7
721,711 - B158DRAFT_0721 0.34 -0.5
721,738 + B158DRAFT_0721 0.45 +0.7
721,738 + B158DRAFT_0721 0.45 +0.7
721,745 + B158DRAFT_0721 0.48 -0.0
721,745 + B158DRAFT_0721 0.48 +0.0
721,746 - B158DRAFT_0721 0.49 -0.4
721,746 - B158DRAFT_0721 0.49 +0.5
721,832 + B158DRAFT_0721 0.85 -2.0
721,840 - B158DRAFT_0721 0.89 -0.6
721,842 + -0.4
721,918 + +0.3
722,045 + B158DRAFT_0722 0.17 +0.4
722,053 - B158DRAFT_0722 0.18 +2.8
722,058 + B158DRAFT_0722 0.18 +0.4
722,075 - B158DRAFT_0722 0.20 -1.2
722,196 - B158DRAFT_0722 0.31 +1.0
722,290 - B158DRAFT_0722 0.39 -3.1
722,296 + B158DRAFT_0722 0.40 -0.6
722,356 - B158DRAFT_0722 0.45 -0.6
722,356 - B158DRAFT_0722 0.45 -2.0
722,385 + B158DRAFT_0722 0.48 +1.4
722,388 - B158DRAFT_0722 0.48 -0.7
722,436 + B158DRAFT_0722 0.53 +1.2
722,460 - B158DRAFT_0722 0.55 +1.6
722,542 + B158DRAFT_0722 0.62 -0.6
722,562 + B158DRAFT_0722 0.64 +1.1
722,568 + B158DRAFT_0722 0.65 +0.0
722,576 - B158DRAFT_0722 0.66 +0.3
722,576 - B158DRAFT_0722 0.66 -0.1
722,576 - B158DRAFT_0722 0.66 -0.2
722,576 - B158DRAFT_0722 0.66 -0.9
722,616 + B158DRAFT_0722 0.69 +0.2
722,616 + B158DRAFT_0722 0.69 +1.5
722,616 + B158DRAFT_0722 0.69 +0.2
722,617 + B158DRAFT_0722 0.69 -0.5
722,618 + B158DRAFT_0722 0.69 +0.7
722,618 + B158DRAFT_0722 0.69 +0.1
722,618 + B158DRAFT_0722 0.69 -1.4
722,624 - B158DRAFT_0722 0.70 -0.3
722,626 - B158DRAFT_0722 0.70 +1.1
722,626 - B158DRAFT_0722 0.70 +0.1
722,626 - B158DRAFT_0722 0.70 +0.3
722,626 - B158DRAFT_0722 0.70 +1.0
722,626 - B158DRAFT_0722 0.70 +0.4
722,626 - B158DRAFT_0722 0.70 +1.1
722,648 - B158DRAFT_0722 0.72 +0.3
722,703 - B158DRAFT_0722 0.77 -0.4
722,718 - B158DRAFT_0722 0.79 +1.7
722,720 + B158DRAFT_0722 0.79 +0.5
722,720 + B158DRAFT_0722 0.79 -0.7
722,728 - B158DRAFT_0722 0.80 +0.6
722,783 - B158DRAFT_0722 0.85 -0.5
722,783 - B158DRAFT_0722 0.85 -1.5

Or see this region's nucleotide sequence