Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0574

Experiment: m.b. Dimethyl Sulfoxide 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0572 and B158DRAFT_0573 are separated by 3 nucleotidesB158DRAFT_0573 and B158DRAFT_0574 are separated by 35 nucleotidesB158DRAFT_0574 and B158DRAFT_0575 are separated by 28 nucleotidesB158DRAFT_0575 and B158DRAFT_0576 are separated by 146 nucleotides B158DRAFT_0572: B158DRAFT_0572 - rRNA methylases, at 577,206 to 577,898 _0572 B158DRAFT_0573: B158DRAFT_0573 - endoribonuclease L-PSP, putative, at 577,902 to 578,288 _0573 B158DRAFT_0574: B158DRAFT_0574 - (p)ppGpp synthetase, RelA/SpoT family, at 578,324 to 580,441 _0574 B158DRAFT_0575: B158DRAFT_0575 - DNA-directed RNA polymerase subunit omega (EC 2.7.7.6), at 580,470 to 580,718 _0575 B158DRAFT_0576: B158DRAFT_0576 - guanylate kinase (EC 2.7.4.8), at 580,865 to 581,518 _0576 Position (kb) 578 579 580 581Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 577.383 kb on - strand, within B158DRAFT_0572at 577.383 kb on - strand, within B158DRAFT_0572at 577.526 kb on + strand, within B158DRAFT_0572at 577.560 kb on - strand, within B158DRAFT_0572at 577.680 kb on - strand, within B158DRAFT_0572at 577.694 kb on + strand, within B158DRAFT_0572at 577.704 kb on + strand, within B158DRAFT_0572at 577.704 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.709 kb on + strand, within B158DRAFT_0572at 577.712 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.717 kb on - strand, within B158DRAFT_0572at 577.766 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.794 kb on + strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.802 kb on - strand, within B158DRAFT_0572at 577.809 kb on + strand, within B158DRAFT_0572at 577.817 kb on - strand, within B158DRAFT_0572at 577.835 kb on - strandat 577.837 kb on + strandat 577.837 kb on + strandat 577.866 kb on - strandat 577.890 kb on - strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.900 kb on + strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.908 kb on - strandat 577.948 kb on + strand, within B158DRAFT_0573at 577.948 kb on + strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.956 kb on - strand, within B158DRAFT_0573at 577.995 kb on - strand, within B158DRAFT_0573at 577.997 kb on + strand, within B158DRAFT_0573at 578.086 kb on - strand, within B158DRAFT_0573at 578.098 kb on + strand, within B158DRAFT_0573at 578.098 kb on + strand, within B158DRAFT_0573at 578.239 kb on + strand, within B158DRAFT_0573at 578.400 kb on - strandat 578.572 kb on + strand, within B158DRAFT_0574at 578.580 kb on - strand, within B158DRAFT_0574at 580.727 kb on - strandat 580.768 kb on - strandat 580.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 2.5 vol%
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577,383 - B158DRAFT_0572 0.26 -2.9
577,383 - B158DRAFT_0572 0.26 -3.6
577,526 + B158DRAFT_0572 0.46 -2.1
577,560 - B158DRAFT_0572 0.51 -1.4
577,680 - B158DRAFT_0572 0.68 -0.2
577,694 + B158DRAFT_0572 0.70 -0.7
577,704 + B158DRAFT_0572 0.72 -0.8
577,704 + B158DRAFT_0572 0.72 +1.2
577,709 + B158DRAFT_0572 0.73 -0.0
577,709 + B158DRAFT_0572 0.73 -2.3
577,709 + B158DRAFT_0572 0.73 -0.3
577,709 + B158DRAFT_0572 0.73 +0.2
577,709 + B158DRAFT_0572 0.73 -1.3
577,712 - B158DRAFT_0572 0.73 -0.0
577,717 - B158DRAFT_0572 0.74 -0.8
577,717 - B158DRAFT_0572 0.74 -1.9
577,717 - B158DRAFT_0572 0.74 +2.7
577,717 - B158DRAFT_0572 0.74 -0.3
577,717 - B158DRAFT_0572 0.74 -0.2
577,766 + B158DRAFT_0572 0.81 -1.5
577,794 + B158DRAFT_0572 0.85 -0.8
577,794 + B158DRAFT_0572 0.85 -1.0
577,794 + B158DRAFT_0572 0.85 +0.4
577,794 + B158DRAFT_0572 0.85 -0.8
577,802 - B158DRAFT_0572 0.86 +1.5
577,802 - B158DRAFT_0572 0.86 +0.0
577,802 - B158DRAFT_0572 0.86 +0.7
577,802 - B158DRAFT_0572 0.86 -0.1
577,802 - B158DRAFT_0572 0.86 -0.3
577,809 + B158DRAFT_0572 0.87 -0.9
577,817 - B158DRAFT_0572 0.88 +1.0
577,835 - +1.3
577,837 + -1.1
577,837 + -0.2
577,866 - -1.3
577,890 - -1.3
577,900 + +0.3
577,900 + +0.3
577,900 + -0.3
577,900 + +1.1
577,900 + -0.5
577,900 + +0.3
577,900 + -2.3
577,908 - -0.7
577,908 - -1.2
577,908 - -0.7
577,908 - -1.7
577,908 - -2.4
577,908 - +1.3
577,908 - -2.2
577,948 + B158DRAFT_0573 0.12 +0.6
577,948 + B158DRAFT_0573 0.12 +0.1
577,956 - B158DRAFT_0573 0.14 +2.3
577,956 - B158DRAFT_0573 0.14 +0.5
577,956 - B158DRAFT_0573 0.14 -0.2
577,956 - B158DRAFT_0573 0.14 -0.2
577,995 - B158DRAFT_0573 0.24 -0.5
577,997 + B158DRAFT_0573 0.25 +0.4
578,086 - B158DRAFT_0573 0.48 -1.2
578,098 + B158DRAFT_0573 0.51 +0.2
578,098 + B158DRAFT_0573 0.51 -1.8
578,239 + B158DRAFT_0573 0.87 -0.1
578,400 - +1.0
578,572 + B158DRAFT_0574 0.12 +0.3
578,580 - B158DRAFT_0574 0.12 +0.3
580,727 - -2.0
580,768 - -0.8
580,833 - -1.2

Or see this region's nucleotide sequence