Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2461

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2460 and B158DRAFT_2461 overlap by 4 nucleotidesB158DRAFT_2461 and B158DRAFT_2462 are separated by 34 nucleotides B158DRAFT_2460: B158DRAFT_2460 - aspartate kinase (EC 2.7.2.4), at 635,360 to 637,843 _2460 B158DRAFT_2461: B158DRAFT_2461 - 5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20), at 637,840 to 638,766 _2461 B158DRAFT_2462: B158DRAFT_2462 - heavy metal efflux pump (cobalt-zinc-cadmium), at 638,801 to 641,929 _2462 Position (kb) 637 638 639Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 636.926 kb on + strand, within B158DRAFT_2460at 637.020 kb on + strand, within B158DRAFT_2460at 637.389 kb on - strand, within B158DRAFT_2460at 637.398 kb on + strand, within B158DRAFT_2460at 637.575 kb on + strand, within B158DRAFT_2460at 637.575 kb on + strand, within B158DRAFT_2460at 637.744 kb on + strandat 637.746 kb on - strandat 638.071 kb on - strand, within B158DRAFT_2461at 638.179 kb on - strand, within B158DRAFT_2461at 638.266 kb on - strand, within B158DRAFT_2461at 638.318 kb on + strand, within B158DRAFT_2461at 638.456 kb on - strand, within B158DRAFT_2461at 638.587 kb on - strand, within B158DRAFT_2461at 638.608 kb on - strand, within B158DRAFT_2461at 638.614 kb on - strand, within B158DRAFT_2461at 638.643 kb on + strand, within B158DRAFT_2461at 638.682 kb on + strandat 638.697 kb on - strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.704 kb on + strandat 638.707 kb on - strandat 638.707 kb on - strandat 638.707 kb on - strandat 638.707 kb on - strandat 638.712 kb on - strandat 638.712 kb on - strandat 638.712 kb on - strandat 638.712 kb on - strandat 638.773 kb on + strandat 638.804 kb on + strandat 638.871 kb on + strandat 638.912 kb on + strandat 638.956 kb on + strandat 639.049 kb on + strandat 639.088 kb on + strandat 639.093 kb on + strandat 639.093 kb on + strandat 639.093 kb on + strandat 639.096 kb on - strandat 639.101 kb on - strandat 639.196 kb on + strand, within B158DRAFT_2462at 639.204 kb on - strand, within B158DRAFT_2462at 639.210 kb on + strand, within B158DRAFT_2462at 639.275 kb on + strand, within B158DRAFT_2462at 639.299 kb on + strand, within B158DRAFT_2462at 639.299 kb on + strand, within B158DRAFT_2462at 639.299 kb on + strand, within B158DRAFT_2462at 639.299 kb on + strand, within B158DRAFT_2462at 639.299 kb on + strand, within B158DRAFT_2462at 639.307 kb on - strand, within B158DRAFT_2462at 639.307 kb on - strand, within B158DRAFT_2462at 639.360 kb on + strand, within B158DRAFT_2462at 639.363 kb on - strand, within B158DRAFT_2462at 639.368 kb on - strand, within B158DRAFT_2462at 639.368 kb on - strand, within B158DRAFT_2462at 639.368 kb on - strand, within B158DRAFT_2462at 639.415 kb on + strand, within B158DRAFT_2462at 639.614 kb on - strand, within B158DRAFT_2462at 639.642 kb on + strand, within B158DRAFT_2462at 639.642 kb on + strand, within B158DRAFT_2462at 639.650 kb on + strand, within B158DRAFT_2462at 639.650 kb on + strand, within B158DRAFT_2462at 639.650 kb on + strand, within B158DRAFT_2462at 639.650 kb on + strand, within B158DRAFT_2462at 639.650 kb on + strand, within B158DRAFT_2462at 639.650 kb on + strand, within B158DRAFT_2462at 639.658 kb on - strand, within B158DRAFT_2462at 639.658 kb on - strand, within B158DRAFT_2462at 639.719 kb on + strand, within B158DRAFT_2462

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
remove
636,926 + B158DRAFT_2460 0.63 -0.5
637,020 + B158DRAFT_2460 0.67 -0.0
637,389 - B158DRAFT_2460 0.82 -1.1
637,398 + B158DRAFT_2460 0.82 +0.5
637,575 + B158DRAFT_2460 0.89 +1.0
637,575 + B158DRAFT_2460 0.89 -0.9
637,744 + +0.1
637,746 - +0.3
638,071 - B158DRAFT_2461 0.25 +0.5
638,179 - B158DRAFT_2461 0.37 +0.2
638,266 - B158DRAFT_2461 0.46 -0.2
638,318 + B158DRAFT_2461 0.52 +0.7
638,456 - B158DRAFT_2461 0.66 +0.1
638,587 - B158DRAFT_2461 0.81 +0.3
638,608 - B158DRAFT_2461 0.83 -1.0
638,614 - B158DRAFT_2461 0.83 -0.9
638,643 + B158DRAFT_2461 0.87 -1.1
638,682 + +0.1
638,697 - +0.5
638,704 + -1.3
638,704 + +0.5
638,704 + -1.2
638,704 + -0.6
638,704 + -0.5
638,704 + -1.5
638,704 + -1.2
638,704 + +1.0
638,704 + +1.1
638,704 + -0.1
638,707 - +1.2
638,707 - -1.3
638,707 - -0.4
638,707 - -0.3
638,712 - +0.2
638,712 - -0.7
638,712 - -0.8
638,712 - -0.8
638,773 + +0.3
638,804 + -0.5
638,871 + -2.8
638,912 + -1.6
638,956 + +0.0
639,049 + -0.1
639,088 + -2.3
639,093 + -0.5
639,093 + -0.8
639,093 + -0.2
639,096 - -0.9
639,101 - -0.9
639,196 + B158DRAFT_2462 0.13 +0.4
639,204 - B158DRAFT_2462 0.13 +0.0
639,210 + B158DRAFT_2462 0.13 -1.0
639,275 + B158DRAFT_2462 0.15 -0.3
639,299 + B158DRAFT_2462 0.16 -0.1
639,299 + B158DRAFT_2462 0.16 -1.6
639,299 + B158DRAFT_2462 0.16 -1.0
639,299 + B158DRAFT_2462 0.16 +0.4
639,299 + B158DRAFT_2462 0.16 -0.5
639,307 - B158DRAFT_2462 0.16 +0.2
639,307 - B158DRAFT_2462 0.16 -0.8
639,360 + B158DRAFT_2462 0.18 -0.3
639,363 - B158DRAFT_2462 0.18 +0.2
639,368 - B158DRAFT_2462 0.18 -0.3
639,368 - B158DRAFT_2462 0.18 +2.4
639,368 - B158DRAFT_2462 0.18 -0.3
639,415 + B158DRAFT_2462 0.20 -0.0
639,614 - B158DRAFT_2462 0.26 -1.0
639,642 + B158DRAFT_2462 0.27 -0.7
639,642 + B158DRAFT_2462 0.27 -0.2
639,650 + B158DRAFT_2462 0.27 -1.0
639,650 + B158DRAFT_2462 0.27 -1.3
639,650 + B158DRAFT_2462 0.27 +0.3
639,650 + B158DRAFT_2462 0.27 -0.5
639,650 + B158DRAFT_2462 0.27 +1.4
639,650 + B158DRAFT_2462 0.27 -0.7
639,658 - B158DRAFT_2462 0.27 -0.8
639,658 - B158DRAFT_2462 0.27 +0.6
639,719 + B158DRAFT_2462 0.29 +1.0

Or see this region's nucleotide sequence