Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2420

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2418 and B158DRAFT_2419 overlap by 4 nucleotidesB158DRAFT_2419 and B158DRAFT_2420 overlap by 4 nucleotidesB158DRAFT_2420 and B158DRAFT_2421 are separated by 4 nucleotidesB158DRAFT_2421 and B158DRAFT_2422 are separated by 11 nucleotides B158DRAFT_2418: B158DRAFT_2418 - Tfp pilus assembly protein FimT, at 589,999 to 590,562 _2418 B158DRAFT_2419: B158DRAFT_2419 - type IV pilus modification protein PilV, at 590,559 to 591,152 _2419 B158DRAFT_2420: B158DRAFT_2420 - prepilin-type N-terminal cleavage/methylation domain, at 591,149 to 591,949 _2420 B158DRAFT_2421: B158DRAFT_2421 - hypothetical protein, at 591,954 to 592,511 _2421 B158DRAFT_2422: B158DRAFT_2422 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 592,523 to 595,474 _2422 Position (kb) 591 592Strain fitness (log2 ratio) -2 -1 0 1 2 3at 590.175 kb on + strand, within B158DRAFT_2418at 590.185 kb on + strand, within B158DRAFT_2418at 590.193 kb on - strand, within B158DRAFT_2418at 590.193 kb on - strand, within B158DRAFT_2418at 590.246 kb on + strand, within B158DRAFT_2418at 590.271 kb on + strand, within B158DRAFT_2418at 590.271 kb on + strand, within B158DRAFT_2418at 590.326 kb on - strand, within B158DRAFT_2418at 590.441 kb on + strand, within B158DRAFT_2418at 590.441 kb on + strand, within B158DRAFT_2418at 590.441 kb on + strand, within B158DRAFT_2418at 590.441 kb on + strand, within B158DRAFT_2418at 590.449 kb on - strand, within B158DRAFT_2418at 590.543 kb on + strandat 590.574 kb on + strandat 590.582 kb on - strandat 590.582 kb on - strandat 590.633 kb on + strand, within B158DRAFT_2419at 590.704 kb on + strand, within B158DRAFT_2419at 590.744 kb on + strand, within B158DRAFT_2419at 590.872 kb on + strand, within B158DRAFT_2419at 591.006 kb on - strand, within B158DRAFT_2419at 591.246 kb on - strand, within B158DRAFT_2420at 591.359 kb on + strand, within B158DRAFT_2420at 591.367 kb on - strand, within B158DRAFT_2420at 591.380 kb on + strand, within B158DRAFT_2420at 591.421 kb on + strand, within B158DRAFT_2420at 591.520 kb on + strand, within B158DRAFT_2420at 591.522 kb on + strand, within B158DRAFT_2420at 591.522 kb on + strand, within B158DRAFT_2420at 591.522 kb on + strand, within B158DRAFT_2420at 591.530 kb on - strand, within B158DRAFT_2420at 591.530 kb on - strand, within B158DRAFT_2420at 591.543 kb on - strand, within B158DRAFT_2420at 591.612 kb on - strand, within B158DRAFT_2420at 591.842 kb on + strand, within B158DRAFT_2420at 591.842 kb on + strand, within B158DRAFT_2420at 591.842 kb on + strand, within B158DRAFT_2420at 591.850 kb on - strand, within B158DRAFT_2420at 591.851 kb on - strand, within B158DRAFT_2420at 592.084 kb on + strand, within B158DRAFT_2421at 592.157 kb on - strand, within B158DRAFT_2421at 592.226 kb on - strand, within B158DRAFT_2421at 592.258 kb on + strand, within B158DRAFT_2421at 592.271 kb on + strand, within B158DRAFT_2421at 592.343 kb on - strand, within B158DRAFT_2421at 592.483 kb on - strandat 592.506 kb on + strandat 592.563 kb on - strandat 592.621 kb on + strandat 592.629 kb on - strandat 592.629 kb on - strandat 592.684 kb on + strandat 592.700 kb on - strandat 592.904 kb on - strand, within B158DRAFT_2422

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
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590,175 + B158DRAFT_2418 0.31 -2.1
590,185 + B158DRAFT_2418 0.33 -0.2
590,193 - B158DRAFT_2418 0.34 +2.8
590,193 - B158DRAFT_2418 0.34 -0.2
590,246 + B158DRAFT_2418 0.44 +0.4
590,271 + B158DRAFT_2418 0.48 -1.0
590,271 + B158DRAFT_2418 0.48 +0.4
590,326 - B158DRAFT_2418 0.58 +0.1
590,441 + B158DRAFT_2418 0.78 -0.0
590,441 + B158DRAFT_2418 0.78 -1.2
590,441 + B158DRAFT_2418 0.78 +0.2
590,441 + B158DRAFT_2418 0.78 -0.0
590,449 - B158DRAFT_2418 0.80 -0.8
590,543 + -0.4
590,574 + +0.3
590,582 - -0.2
590,582 - +0.5
590,633 + B158DRAFT_2419 0.12 +0.8
590,704 + B158DRAFT_2419 0.24 -0.7
590,744 + B158DRAFT_2419 0.31 -0.6
590,872 + B158DRAFT_2419 0.53 -0.5
591,006 - B158DRAFT_2419 0.75 -0.4
591,246 - B158DRAFT_2420 0.12 -0.9
591,359 + B158DRAFT_2420 0.26 -0.2
591,367 - B158DRAFT_2420 0.27 -1.0
591,380 + B158DRAFT_2420 0.29 +0.2
591,421 + B158DRAFT_2420 0.34 +0.6
591,520 + B158DRAFT_2420 0.46 -0.2
591,522 + B158DRAFT_2420 0.47 -2.0
591,522 + B158DRAFT_2420 0.47 +3.0
591,522 + B158DRAFT_2420 0.47 +0.5
591,530 - B158DRAFT_2420 0.48 +1.8
591,530 - B158DRAFT_2420 0.48 +0.1
591,543 - B158DRAFT_2420 0.49 -0.6
591,612 - B158DRAFT_2420 0.58 -1.0
591,842 + B158DRAFT_2420 0.87 -0.9
591,842 + B158DRAFT_2420 0.87 +0.5
591,842 + B158DRAFT_2420 0.87 +1.5
591,850 - B158DRAFT_2420 0.88 -0.0
591,851 - B158DRAFT_2420 0.88 +0.5
592,084 + B158DRAFT_2421 0.23 +1.7
592,157 - B158DRAFT_2421 0.36 +0.2
592,226 - B158DRAFT_2421 0.49 -1.3
592,258 + B158DRAFT_2421 0.54 -0.8
592,271 + B158DRAFT_2421 0.57 -0.1
592,343 - B158DRAFT_2421 0.70 +1.5
592,483 - +1.5
592,506 + -0.4
592,563 - -1.0
592,621 + +0.9
592,629 - -1.0
592,629 - +1.0
592,684 + -0.6
592,700 - +0.4
592,904 - B158DRAFT_2422 0.13 +0.8

Or see this region's nucleotide sequence