Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1588

Experiment: m.b. Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1585 and B158DRAFT_1586 are separated by 33 nucleotidesB158DRAFT_1586 and B158DRAFT_1587 are separated by 75 nucleotidesB158DRAFT_1587 and B158DRAFT_1588 are separated by 157 nucleotidesB158DRAFT_1588 and B158DRAFT_1589 overlap by 8 nucleotides B158DRAFT_1585: B158DRAFT_1585 - Beta-glucosidase-related glycosidases, at 1,647,130 to 1,648,140 _1585 B158DRAFT_1586: B158DRAFT_1586 - Uncharacterized conserved small protein, at 1,648,174 to 1,648,530 _1586 B158DRAFT_1587: B158DRAFT_1587 - hypothetical protein, at 1,648,606 to 1,648,896 _1587 B158DRAFT_1588: B158DRAFT_1588 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,649,054 to 1,650,298 _1588 B158DRAFT_1589: B158DRAFT_1589 - lipoprotein releasing system, ATP-binding protein, at 1,650,291 to 1,650,977 _1589 Position (kb) 1649 1650 1651Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1648.066 kb on + strandat 1648.066 kb on + strandat 1648.066 kb on + strandat 1648.071 kb on + strandat 1648.074 kb on - strandat 1648.079 kb on - strandat 1648.090 kb on + strandat 1648.090 kb on + strandat 1648.090 kb on + strandat 1648.090 kb on + strandat 1648.097 kb on + strandat 1648.098 kb on - strandat 1648.098 kb on - strandat 1648.109 kb on + strandat 1648.109 kb on + strandat 1648.109 kb on + strandat 1648.166 kb on + strandat 1648.166 kb on + strandat 1648.166 kb on + strandat 1648.166 kb on + strandat 1648.172 kb on + strandat 1648.174 kb on - strandat 1648.174 kb on - strandat 1648.174 kb on - strandat 1648.174 kb on - strandat 1648.174 kb on - strandat 1648.190 kb on + strandat 1648.190 kb on + strandat 1648.198 kb on - strandat 1648.198 kb on - strandat 1648.198 kb on - strandat 1648.198 kb on - strandat 1648.198 kb on - strandat 1648.208 kb on - strandat 1648.244 kb on - strand, within B158DRAFT_1586at 1648.282 kb on + strand, within B158DRAFT_1586at 1648.290 kb on - strand, within B158DRAFT_1586at 1648.300 kb on + strand, within B158DRAFT_1586at 1648.300 kb on + strand, within B158DRAFT_1586at 1648.349 kb on + strand, within B158DRAFT_1586at 1648.349 kb on + strand, within B158DRAFT_1586at 1648.357 kb on - strand, within B158DRAFT_1586at 1648.357 kb on - strand, within B158DRAFT_1586at 1648.359 kb on + strand, within B158DRAFT_1586at 1648.416 kb on - strand, within B158DRAFT_1586at 1648.487 kb on + strand, within B158DRAFT_1586at 1648.487 kb on + strand, within B158DRAFT_1586at 1648.490 kb on - strand, within B158DRAFT_1586at 1648.495 kb on - strandat 1648.495 kb on - strandat 1648.593 kb on + strandat 1648.593 kb on + strandat 1648.593 kb on + strandat 1648.593 kb on + strandat 1648.593 kb on + strandat 1648.601 kb on - strandat 1648.603 kb on + strandat 1648.606 kb on - strandat 1648.662 kb on + strand, within B158DRAFT_1587at 1648.705 kb on + strand, within B158DRAFT_1587at 1648.705 kb on + strand, within B158DRAFT_1587at 1648.705 kb on + strand, within B158DRAFT_1587at 1648.705 kb on + strand, within B158DRAFT_1587at 1648.705 kb on + strand, within B158DRAFT_1587at 1648.705 kb on + strand, within B158DRAFT_1587at 1648.713 kb on - strand, within B158DRAFT_1587at 1648.713 kb on - strand, within B158DRAFT_1587at 1648.713 kb on - strand, within B158DRAFT_1587at 1648.713 kb on - strand, within B158DRAFT_1587at 1648.771 kb on - strand, within B158DRAFT_1587at 1648.873 kb on + strandat 1648.881 kb on - strandat 1648.882 kb on + strandat 1648.889 kb on + strandat 1648.889 kb on + strandat 1648.897 kb on - strandat 1651.033 kb on + strandat 1651.033 kb on + strandat 1651.033 kb on + strandat 1651.033 kb on + strandat 1651.041 kb on - strandat 1651.041 kb on - strandat 1651.041 kb on - strandat 1651.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 5 vol%
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1,648,066 + -1.2
1,648,066 + -1.7
1,648,066 + +0.7
1,648,071 + -2.2
1,648,074 - -0.8
1,648,079 - -2.4
1,648,090 + -2.6
1,648,090 + -0.7
1,648,090 + -2.3
1,648,090 + +1.0
1,648,097 + -0.9
1,648,098 - +0.9
1,648,098 - -4.0
1,648,109 + -0.8
1,648,109 + -0.7
1,648,109 + -0.9
1,648,166 + -0.6
1,648,166 + -2.2
1,648,166 + +0.3
1,648,166 + -0.5
1,648,172 + -1.5
1,648,174 - -0.4
1,648,174 - -0.4
1,648,174 - -0.4
1,648,174 - -0.7
1,648,174 - +1.3
1,648,190 + +0.8
1,648,190 + -2.2
1,648,198 - -0.1
1,648,198 - -0.3
1,648,198 - -0.7
1,648,198 - +0.2
1,648,198 - -1.1
1,648,208 - -0.5
1,648,244 - B158DRAFT_1586 0.20 -1.8
1,648,282 + B158DRAFT_1586 0.30 +0.4
1,648,290 - B158DRAFT_1586 0.32 +0.2
1,648,300 + B158DRAFT_1586 0.35 +0.6
1,648,300 + B158DRAFT_1586 0.35 -0.1
1,648,349 + B158DRAFT_1586 0.49 -2.1
1,648,349 + B158DRAFT_1586 0.49 +0.1
1,648,357 - B158DRAFT_1586 0.51 +0.4
1,648,357 - B158DRAFT_1586 0.51 -0.3
1,648,359 + B158DRAFT_1586 0.52 -1.2
1,648,416 - B158DRAFT_1586 0.68 -1.0
1,648,487 + B158DRAFT_1586 0.88 -0.6
1,648,487 + B158DRAFT_1586 0.88 +0.2
1,648,490 - B158DRAFT_1586 0.89 -0.2
1,648,495 - -2.7
1,648,495 - -0.1
1,648,593 + -1.0
1,648,593 + -0.4
1,648,593 + -0.9
1,648,593 + -0.2
1,648,593 + -0.1
1,648,601 - -0.8
1,648,603 + -0.7
1,648,606 - -0.1
1,648,662 + B158DRAFT_1587 0.19 -0.4
1,648,705 + B158DRAFT_1587 0.34 -0.5
1,648,705 + B158DRAFT_1587 0.34 -0.0
1,648,705 + B158DRAFT_1587 0.34 -2.3
1,648,705 + B158DRAFT_1587 0.34 +0.1
1,648,705 + B158DRAFT_1587 0.34 -0.9
1,648,705 + B158DRAFT_1587 0.34 +0.5
1,648,713 - B158DRAFT_1587 0.37 -0.4
1,648,713 - B158DRAFT_1587 0.37 -1.2
1,648,713 - B158DRAFT_1587 0.37 -1.2
1,648,713 - B158DRAFT_1587 0.37 -1.1
1,648,771 - B158DRAFT_1587 0.57 -0.6
1,648,873 + -0.6
1,648,881 - +1.0
1,648,882 + -0.9
1,648,889 + -0.3
1,648,889 + -1.8
1,648,897 - -0.2
1,651,033 + +0.9
1,651,033 + +1.5
1,651,033 + +0.3
1,651,033 + +0.1
1,651,041 - -0.2
1,651,041 - -1.3
1,651,041 - +0.9
1,651,041 - -0.8

Or see this region's nucleotide sequence